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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0263600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Strictosidine synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.14 (0.0176) R2 : 0.00738
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0682 (0.037) R2dN8 : 0.00953 R2N8 : 0.00738
σ : 0.331
deviance : 50.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.78 0.325 3.15 0.106 0.14 0.175 -0.0389 0.812 -0.0887 8.27 91 5877 -- --
48.68 0.325 3.14 0.0621 0.164 0.204 -0.0543 -- -0.107 7.93 97.31 4790 -- --
47.78 0.322 3.15 0.105 0.14 0.175 -- 0.813 -0.0886 8.32 91 5876 -- --
48.65 0.325 3.15 0.053 0.145 0.221 -- -- -0.117 7.97 113.6 4439 -- --
48.87 0.326 3.15 0.103 -- 0.175 -- 0.792 -0.0879 -- 91 5834 -- --
49.23 0.329 3.13 0.038 0.139 -- -0.0452 -- -0.0656 8.2 -- -- -- --
49.23 0.329 3.13 0.0367 0.139 -- -- -- -0.0655 8.25 -- -- -- --
49.72 0.328 3.15 0.048 -- 0.218 -- -- -0.11 -- 115.8 4354 -- --
48.71 0.325 3.15 -- 0.141 0.213 -- -- -0.116 8.01 117.6 4412 -- --
50.3 0.331 3.14 0.0377 -- -- -- -- -0.064 -- -- -- -- --
49.27 0.328 3.14 -- 0.139 -- -- -- -0.0696 8.23 -- -- -- --
49.78 0.329 3.15 -- -- 0.214 -- -- -0.114 -- 120.8 4355 -- --
50.34 0.331 3.14 -- -- -- -- -- -0.0682 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.58 wind 7.0 10 > th dose dependent rect. 12 1
3 44.56 atmosphere 1015.0 30 < th dose dependent rect. 2 1
4 44.58 wind 1.0 30 < th dose independent rect. 2 1
5 44.61 wind 3.0 30 < th dose dependent rect. 2 1
7 44.63 temperature 25.0 30 < th dose independent rect. 2 1
16 44.66 temperature 10.0 30 > th dose independent rect. 2 1
19 44.66 humidity 50.0 30 > th dose independent rect. 2 1
23 44.66 atmosphere 995.0 30 > th dose independent rect. 2 1
24 44.66 atmosphere 1010.0 30 < th dose independent rect. 2 1
26 44.66 radiation 1.0 30 < th dose independent rect. 2 1
31 44.66 precipitation 0.1 30 < th dose independent rect. 2 1
32 44.66 temperature 10.0 30 > th dose independent rect. 3 23
33 44.66 humidity 50.0 30 > th dose dependent rect. 2 1
35 44.66 radiation 1.0 30 < th dose dependent rect. 2 1
40 44.66 precipitation 0.1 30 < th dose dependent rect. 2 1
41 44.67 temperature 10.0 30 > th dose dependent rect. 2 1
45 44.69 wind 7.0 10 > th dose independent rect. 12 1
48 44.70 atmosphere 1005.0 30 > th dose dependent rect. 2 1
49 44.71 temperature 30.0 30 < th dose dependent rect. 2 1
53 44.75 atmosphere 995.0 30 > th dose dependent rect. 2 1
62 44.80 wind 9.0 30 < th dose independent rect. 3 23
64 44.81 atmosphere 1005.0 30 > th dose independent rect. 2 1
100 45.03 wind 1.0 30 > th dose independent rect. 2 1
112 46.12 atmosphere 995.0 30 > th dose independent rect. 3 23
113 46.16 wind 9.0 270 > th dose dependent rect. 9 1
142 47.04 atmosphere 995.0 720 > th dose independent rect. 23 16
149 47.12 temperature 10.0 720 > th dose independent rect. 15 8
150 47.12 temperature 10.0 720 > th dose independent rect. 23 16
151 47.14 wind 9.0 270 > th dose independent rect. 9 1
160 47.15 temperature 10.0 720 > th dose independent rect. 3 8
161 47.15 atmosphere 995.0 720 > th dose independent rect. 3 8
162 47.15 temperature 10.0 720 > th dose independent rect. 11 16
165 47.18 wind 9.0 720 < th dose independent rect. 3 8
167 47.22 humidity 80.0 14400 < th dose dependent rect. 3 6
169 47.25 precipitation 0.1 30 < th dose independent rect. 3 23
171 47.25 precipitation 0.1 30 < th dose dependent rect. 3 23
176 47.31 atmosphere 1015.0 720 < th dose independent rect. 3 8
182 47.33 precipitation 0.1 720 < th dose independent rect. 15 8
183 47.33 precipitation 0.1 720 < th dose dependent rect. 15 8
184 47.36 wind 7.0 14400 < th dose independent rect. 9 1
186 47.37 radiation 40.0 720 < th dose independent rect. 15 8
200 47.49 humidity 50.0 720 > th dose independent rect. 3 8
203 47.50 humidity 70.0 14400 > th dose independent rect. 8 1
205 47.50 precipitation 0.1 720 < th dose independent rect. 11 16
208 47.50 precipitation 0.1 720 < th dose dependent rect. 11 16
210 47.53 humidity 70.0 14400 > th dose independent rect. 20 13
214 47.54 humidity 70.0 14400 > th dose independent rect. 4 5
215 47.55 wind 7.0 14400 > th dose independent rect. 9 1
216 47.55 humidity 70.0 14400 > th dose independent rect. 6 3
220 47.55 wind 9.0 720 < th dose independent rect. 15 8
226 47.56 humidity 70.0 1440 < th dose independent rect. 10 1
232 47.61 humidity 90.0 90 < th dose independent rect. 2 1
233 47.61 humidity 70.0 14400 < th dose independent rect. 8 1
236 47.62 atmosphere 1005.0 270 < th dose independent rect. 9 2
238 47.62 wind 9.0 30 < th dose dependent rect. 3 23
240 47.63 radiation 10.0 30 < th dose independent rect. 3 23
241 47.63 temperature 25.0 720 > th dose dependent rect. 2 6
242 47.64 humidity 70.0 1440 > th dose independent rect. 10 1
243 47.64 atmosphere 1005.0 30 > th dose independent rect. 4 15
248 47.65 precipitation 0.1 720 < th dose independent rect. 3 8
249 47.65 atmosphere 1005.0 10 > th dose independent rect. 4 13
252 47.65 precipitation 0.1 720 < th dose dependent rect. 3 8
260 47.68 humidity 70.0 14400 < th dose independent rect. 20 13
261 47.68 wind 1.0 14400 < th dose dependent rect. 6 1
267 47.70 radiation 10.0 30 < th dose dependent rect. 3 23
270 47.71 humidity 70.0 14400 < th dose independent rect. 6 3
285 47.72 wind 9.0 4320 < th dose independent rect. 3 1
293 47.74 humidity 90.0 720 < th dose independent rect. 2 1
299 47.74 precipitation 0.1 720 < th dose independent rect. 23 16
303 47.74 precipitation 0.1 720 < th dose dependent rect. 23 16
309 47.75 temperature 25.0 720 > th dose dependent rect. 23 10
311 47.76 atmosphere 1015.0 30 < th dose independent rect. 3 23
312 47.76 wind 7.0 14400 > th dose dependent rect. 9 1
318 47.77 radiation 10.0 30 < th dose independent rect. 3 8
321 47.77 atmosphere 995.0 10 > th dose dependent rect. 4 15
324 47.78 humidity 90.0 90 < th dose independent rect. 1 22
329 47.79 temperature 25.0 720 > th dose independent rect. 3 5
337 47.79 atmosphere 1005.0 10 > th dose independent rect. 4 11
341 47.79 wind 1.0 30 > th dose dependent rect. 2 1
343 47.80 wind 5.0 14400 < th dose independent rect. 11 1
344 47.80 wind 7.0 30 < th dose independent rect. 3 12
349 47.80 wind 9.0 30 < th dose dependent rect. 3 12
357 47.81 atmosphere 995.0 720 > th dose independent rect. 7 8
377 47.82 temperature 10.0 720 > th dose dependent rect. 3 1
378 47.82 humidity 60.0 720 > th dose dependent rect. 3 1
386 47.83 humidity 50.0 30 > th dose independent rect. 3 23
389 47.83 wind 7.0 30 < th dose dependent rect. 3 10
393 47.84 temperature 10.0 1440 > th dose independent rect. 3 1
396 47.84 temperature 30.0 1440 < th dose independent rect. 3 1
400 47.84 humidity 50.0 1440 > th dose independent rect. 3 1
409 47.84 atmosphere 995.0 1440 > th dose independent rect. 3 1
410 47.84 radiation 1.0 1440 < th dose independent rect. 3 1
433 47.84 temperature 10.0 1440 > th dose independent rect. 4 23
437 47.84 radiation 1.0 1440 < th dose dependent rect. 3 1
458 47.85 humidity 70.0 1440 > th dose independent rect. 17 18
462 47.86 radiation 40.0 720 > th dose independent rect. 9 1
468 47.86 humidity 70.0 4320 > th dose dependent rect. 3 8
471 47.86 humidity 70.0 30 > th dose dependent rect. 3 23
483 47.88 wind 1.0 14400 < th dose independent rect. 6 1
489 47.88 radiation 10.0 30 > th dose independent rect. 17 17
494 47.89 atmosphere 1005.0 10 > th dose independent rect. 4 9
495 47.89 humidity 80.0 4320 > th dose independent rect. 3 10
496 47.89 humidity 80.0 4320 < th dose independent rect. 3 10
498 47.89 wind 9.0 720 < th dose independent rect. 23 16
504 47.90 wind 5.0 720 < th dose independent rect. 3 1
506 47.90 atmosphere 1005.0 270 < th dose independent rect. 5 7
512 47.90 radiation 20.0 10 < th dose independent rect. 11 16
516 47.90 wind 1.0 14400 < th dose dependent rect. 4 4
525 47.91 radiation 10.0 720 > th dose independent rect. 7 2
530 47.91 atmosphere 995.0 90 > th dose independent rect. 3 12
539 47.91 humidity 50.0 4320 > th dose dependent rect. 24 13
544 47.92 wind 1.0 14400 < th dose independent rect. 4 4
546 47.92 radiation 10.0 30 < th dose independent rect. 3 5
570 47.93 wind 5.0 14400 > th dose independent rect. 11 1
575 47.93 wind 9.0 720 < th dose independent rect. 19 8
579 47.93 radiation 40.0 90 < th dose independent rect. 2 11
605 47.94 temperature 15.0 90 > th dose independent rect. 15 12
608 47.94 radiation 20.0 90 < th dose independent rect. 10 17
609 47.94 radiation 40.0 270 > th dose independent rect. 14 20
610 47.94 humidity 50.0 4320 > th dose dependent sin 5 NA
640 47.95 temperature 20.0 90 > th dose independent rect. 3 3
642 47.95 wind 1.0 14400 > th dose independent rect. 4 4
643 47.95 humidity 90.0 4320 < th dose independent rect. 4 5
649 47.95 wind 7.0 90 < th dose independent rect. 15 12
652 47.95 radiation 10.0 720 > th dose independent rect. 17 16
668 47.96 radiation 20.0 720 > th dose independent rect. 15 1
670 47.96 radiation 20.0 10 > th dose independent rect. 8 2
671 47.96 radiation 10.0 30 > th dose independent rect. 6 4
694 47.96 temperature 20.0 270 > th dose dependent rect. 3 1
695 47.96 temperature 20.0 90 > th dose dependent rect. 3 3
708 47.96 humidity 90.0 4320 < th dose dependent rect. 23 14
716 47.96 atmosphere 995.0 30 > th dose dependent rect. 3 23
717 47.97 humidity 80.0 30 < th dose independent rect. 9 1
723 47.97 atmosphere 1010.0 10 < th dose independent rect. 3 4
725 47.97 radiation 10.0 720 > th dose independent rect. 5 4
735 47.97 temperature 10.0 720 > th dose independent rect. 19 8
736 47.97 temperature 30.0 720 < th dose independent rect. 19 8
738 47.97 humidity 50.0 720 > th dose independent rect. 19 8
740 47.97 atmosphere 995.0 720 > th dose independent rect. 19 8
743 47.97 radiation 1.0 720 < th dose independent rect. 19 8
767 47.97 temperature 10.0 720 > th dose independent rect. 3 16
775 47.97 humidity 60.0 14400 < th dose dependent rect. 12 1
777 47.97 wind 1.0 14400 < th dose dependent rect. 4 7
779 47.97 radiation 1.0 720 < th dose dependent rect. 19 8
812 47.98 wind 1.0 14400 > th dose independent rect. 5 2
819 47.98 wind 1.0 14400 < th dose independent rect. 4 7
821 47.98 temperature 10.0 720 > th dose independent rect. 7 8
822 47.98 atmosphere 1015.0 720 < th dose independent rect. 7 8
826 47.98 radiation 40.0 10 < th dose independent rect. 3 9
829 47.98 radiation 40.0 10 < th dose independent rect. 3 11
830 47.98 radiation 40.0 90 < th dose independent rect. 15 12
832 47.98 temperature 10.0 720 > th dose independent rect. 15 16
833 47.98 humidity 70.0 1440 < th dose independent rect. 17 18
841 47.98 humidity 90.0 4320 < th dose dependent sin 5 NA
867 47.99 temperature 30.0 1440 < th dose independent sin 2 NA
891 47.99 humidity 70.0 720 > th dose independent rect. 19 8
915 47.99 wind 9.0 720 < th dose independent rect. 11 16
918 47.99 temperature 30.0 1440 < th dose independent rect. 3 19
925 47.99 temperature 30.0 1440 < th dose independent rect. 18 22
926 47.99 temperature 30.0 1440 < th dose independent rect. 12 23
934 47.99 humidity 90.0 720 < th dose dependent rect. 1 2
946 47.99 humidity 90.0 4320 < th dose dependent rect. 3 10
966 48.00 temperature 30.0 1440 < th dose independent sin 0 NA
969 48.00 temperature 30.0 1440 < th dose independent no NA NA
980 48.00 temperature 30.0 1440 < th dose independent rect. 7 12
984 48.00 temperature 30.0 1440 < th dose independent rect. 3 14