Os09g0373300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Strictosidine synthase family protein.
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Os09g0373300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Strictosidine synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.43 | 0.353 | 3.31 | -0.579 | 0.0859 | 2.81 | 0.122 | -10.3 | -0.253 | 7.69 | 3 | 1 | 10 | 1 |
| 82.48 | 0.426 | 3.32 | -0.566 | 0.105 | 0.235 | 0.0309 | -- | -0.287 | 7.68 | 3 | 1 | 10 | 1 |
| 82.46 | 0.426 | 3.32 | -0.564 | 0.105 | 0.243 | -- | 0.159 | -0.287 | 7.65 | 3 | 1 | 10 | 1 |
| 79.33 | 0.415 | 3.33 | -0.601 | 0.0347 | 0.639 | -- | -- | -0.283 | 8.07 | 2.9 | 9 | 9.13 | 0.799 |
| 63.21 | 0.37 | 3.33 | -0.536 | -- | 3 | -- | -4.2 | -0.427 | -- | 7.701 | 59 | 5.68 | 4.32 |
| 83.41 | 0.428 | 3.32 | -0.57 | 0.134 | -- | 0.013 | -- | -0.277 | 8.29 | -- | -- | -- | -- |
| 83.41 | 0.428 | 3.32 | -0.57 | 0.134 | -- | -- | -- | -0.277 | 8.28 | -- | -- | -- | -- |
| 59.79 | 0.362 | 3.31 | -0.525 | -- | 4.97 | -- | -- | -0.256 | -- | 7.094 | 55 | 5.32 | 4.66 |
| 65.91 | 0.378 | 3.3 | -- | 0.0357 | 3.91 | -- | -- | -0.175 | 14.4 | 7.4 | 6 | 8.83 | 3.08 |
| 84.39 | 0.429 | 3.32 | -0.569 | -- | -- | -- | -- | -0.275 | -- | -- | -- | -- | -- |
| 91.96 | 0.449 | 3.3 | -- | 0.131 | -- | -- | -- | -0.213 | 8.6 | -- | -- | -- | -- |
| 64.9 | 0.375 | 3.3 | -- | -- | 4.75 | -- | -- | -0.192 | -- | 7.438 | 3 | 8.74 | 3.04 |
| 92.93 | 0.45 | 3.3 | -- | -- | -- | -- | -- | -0.212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.43 | wind | 5.0 | 10 | > th | dose independent | rect. | 10 | 1 |
| 5 | 56.43 | wind | 5.0 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 9 | 59.47 | wind | 7.0 | 90 | > th | dose dependent | rect. | 8 | 2 |
| 33 | 60.24 | humidity | 90.0 | 90 | > th | dose independent | rect. | 8 | 2 |
| 41 | 61.07 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 8 | 2 |
| 49 | 62.49 | wind | 9.0 | 90 | > th | dose dependent | rect. | 21 | 13 |
| 50 | 62.49 | wind | 9.0 | 90 | > th | dose dependent | rect. | 19 | 15 |
| 233 | 73.34 | wind | 9.0 | 90 | > th | dose independent | rect. | 19 | 15 |
| 395 | 75.93 | temperature | 25.0 | 30 | > th | dose independent | rect. | 9 | 1 |
| 437 | 76.55 | wind | 7.0 | 10 | > th | dose independent | sin | 7 | NA |
| 510 | 77.61 | wind | 7.0 | 10 | < th | dose independent | sin | 7 | NA |
| 559 | 77.93 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 6 | 2 |
| 560 | 77.93 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 6 | 2 |
| 575 | 78.03 | wind | 5.0 | 720 | > th | dose independent | rect. | 22 | 12 |
| 591 | 78.08 | wind | 9.0 | 720 | > th | dose independent | rect. | 22 | 12 |
| 615 | 78.18 | wind | 7.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 624 | 78.23 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 648 | 78.35 | wind | 7.0 | 10 | > th | dose independent | rect. | 17 | 18 |
| 655 | 78.38 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 662 | 78.40 | wind | 5.0 | 720 | < th | dose independent | rect. | 3 | 6 |
| 668 | 78.46 | wind | 7.0 | 90 | > th | dose independent | rect. | 17 | 18 |
| 690 | 78.56 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 691 | 78.56 | wind | 9.0 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 692 | 78.57 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 696 | 78.58 | wind | 7.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 711 | 78.62 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 716 | 78.62 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 717 | 78.63 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 722 | 78.64 | wind | 7.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 749 | 78.70 | wind | 7.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 754 | 78.71 | wind | 5.0 | 10 | > th | dose dependent | sin | 6 | NA |
| 769 | 78.73 | wind | 5.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 770 | 78.73 | wind | 5.0 | 90 | > th | dose dependent | rect. | 17 | 18 |
| 782 | 78.77 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 798 | 78.81 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 23 | 13 |
| 802 | 78.81 | wind | 7.0 | 30 | < th | dose dependent | rect. | 3 | 12 |
| 807 | 78.83 | wind | 3.0 | 270 | < th | dose independent | sin | 4 | NA |
| 827 | 78.87 | wind | 7.0 | 30 | < th | dose dependent | rect. | 3 | 14 |
| 832 | 78.88 | wind | 9.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 852 | 78.92 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 913 | 78.98 | wind | 9.0 | 43200 | > th | dose independent | rect. | 12 | 18 |
| 915 | 78.99 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 928 | 79.00 | wind | 3.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 931 | 79.00 | humidity | 60.0 | 43200 | < th | dose dependent | sin | 5 | NA |
| 936 | 79.01 | wind | 3.0 | 270 | < th | dose independent | rect. | 3 | 12 |
| 946 | 79.02 | wind | 9.0 | 43200 | < th | dose independent | rect. | 12 | 17 |
| 955 | 79.03 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 963 | 79.03 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 973 | 79.04 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |