BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0409100 Os08g0409100|J100046I12
(139 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0409100 Trehalose-phosphatase domain containing protein 239 4e-64
Os09g0369400 Similar to Trehalose-6-phosphate phosphatase 110 3e-25
Os02g0753000 Similar to Trehalose-6-phosphate phosphatase 108 9e-25
Os06g0222100 HAD-superfamily hydrolase subfamily IIB protein 95 2e-20
Os07g0624600 Similar to Trehalose-6-phosphate phosphatase 89 1e-18
Os02g0661100 Similar to Trehalose-6-phosphate phosphatase 87 5e-18
Os07g0485000 Similar to Trehalose-6-phosphate phosphatase 81 2e-16
Os03g0386500 Similar to Trehalose-6-phosphate phosphatase 81 2e-16
Os10g0553300 Similar to Trehalose-6-phosphate phosphatase 78 2e-15
Os04g0554000 75 1e-14
>Os08g0409100 Trehalose-phosphatase domain containing protein
Length = 139
Score = 239 bits (611), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 26 IVLCARCETNNKNNAGFADCTNVLPVYIGDDRTDEDAFKVLRKRGQGIGILVSKYPKDTN 85
IVLCARCETNNKNNAGFADCTNVLPVYIGDDRTDEDAFKVLRKRGQGIGILVSKYPKDTN
Sbjct: 26 IVLCARCETNNKNNAGFADCTNVLPVYIGDDRTDEDAFKVLRKRGQGIGILVSKYPKDTN 85
Query: 86 ASYSLQEPAEVMTTPLAFLSIFLSDFSSQNCQHVHHTKMFRFFFRKGNSSTLNK 139
ASYSLQEPAEVMTTPLAFLSIFLSDFSSQNCQHVHHTKMFRFFFRKGNSSTLNK
Sbjct: 86 ASYSLQEPAEVMTTPLAFLSIFLSDFSSQNCQHVHHTKMFRFFFRKGNSSTLNK 139
>Os09g0369400 Similar to Trehalose-6-phosphate phosphatase
Length = 464
Score = 110 bits (275), Expect = 3e-25, Method: Composition-based stats.
Identities = 47/66 (71%), Positives = 61/66 (92%)
Query: 38 NNAGFADCTNVLPVYIGDDRTDEDAFKVLRKRGQGIGILVSKYPKDTNASYSLQEPAEVM 97
++ GFADC++VLPVYIGDDRTDEDAFKVLR+RGQG+GILVSK+PK+T+AS+SLQEPAE+
Sbjct: 357 DSLGFADCSDVLPVYIGDDRTDEDAFKVLRRRGQGVGILVSKHPKETSASFSLQEPAELK 416
Query: 98 TTPLAF 103
+ + +
Sbjct: 417 KSSVHY 422
>Os02g0753000 Similar to Trehalose-6-phosphate phosphatase
Length = 367
Score = 108 bits (271), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 49/57 (85%), Positives = 54/57 (94%)
Query: 41 GFADCTNVLPVYIGDDRTDEDAFKVLRKRGQGIGILVSKYPKDTNASYSLQEPAEVM 97
GFA+C +V+PVYIGDDRTDEDAFKVLRKRGQG+GILVSK PKDTNASYSLQ+P EVM
Sbjct: 287 GFANCGDVMPVYIGDDRTDEDAFKVLRKRGQGLGILVSKCPKDTNASYSLQDPTEVM 343
>Os06g0222100 HAD-superfamily hydrolase subfamily IIB protein
Length = 484
Score = 94.7 bits (234), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/68 (69%), Positives = 56/68 (82%), Gaps = 2/68 (2%)
Query: 44 DCTNVLPVYIGDDRTDEDAFKVLRKRGQGIGILVSKYPKDTNASYSLQEPAEVMTTPLA- 102
D +VLPVYIGDDRTDEDAFKVLRKRGQG+GILVSK K+T+ASYSLQ+PAE T A
Sbjct: 285 DRRDVLPVYIGDDRTDEDAFKVLRKRGQGLGILVSKCAKETDASYSLQDPAEKYTNAGAH 344
Query: 103 -FLSIFLS 109
F+++ L+
Sbjct: 345 VFVTMLLT 352
>Os07g0624600 Similar to Trehalose-6-phosphate phosphatase
Length = 366
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/56 (71%), Positives = 47/56 (83%)
Query: 41 GFADCTNVLPVYIGDDRTDEDAFKVLRKRGQGIGILVSKYPKDTNASYSLQEPAEV 96
G+ NV P+YIGDDRTDEDAFKVLR GQGIGILV+K PK+T ASY+L+EP+EV
Sbjct: 290 GYEGRNNVFPIYIGDDRTDEDAFKVLRNMGQGIGILVTKVPKETAASYTLREPSEV 345
>Os02g0661100 Similar to Trehalose-6-phosphate phosphatase
Length = 371
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 47/57 (82%)
Query: 41 GFADCTNVLPVYIGDDRTDEDAFKVLRKRGQGIGILVSKYPKDTNASYSLQEPAEVM 97
G D NV+P+YIGDDRTDEDAFKVLR+R G GILVS+ PK+T A YSL++P+EVM
Sbjct: 301 GLNDSENVIPIYIGDDRTDEDAFKVLRQRNCGYGILVSQVPKETEAFYSLRDPSEVM 357
>Os07g0485000 Similar to Trehalose-6-phosphate phosphatase
Length = 359
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 44/56 (78%)
Query: 42 FADCTNVLPVYIGDDRTDEDAFKVLRKRGQGIGILVSKYPKDTNASYSLQEPAEVM 97
A C NVLP+YIGDD TDEDAFKVLR +G GILVS PKD++A YSL +P+EVM
Sbjct: 286 LASCKNVLPIYIGDDCTDEDAFKVLRDDKRGFGILVSSVPKDSHALYSLIDPSEVM 341
>Os03g0386500 Similar to Trehalose-6-phosphate phosphatase
Length = 310
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 42/47 (89%)
Query: 50 PVYIGDDRTDEDAFKVLRKRGQGIGILVSKYPKDTNASYSLQEPAEV 96
P+YIGDDRTDEDAF+VLR RG G GILVS++PKDT AS+SL++P EV
Sbjct: 251 PIYIGDDRTDEDAFRVLRARGHGAGILVSRFPKDTCASFSLRDPGEV 297
>Os10g0553300 Similar to Trehalose-6-phosphate phosphatase
Length = 382
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 44/57 (77%)
Query: 41 GFADCTNVLPVYIGDDRTDEDAFKVLRKRGQGIGILVSKYPKDTNASYSLQEPAEVM 97
G +VLP+Y+GDD+TDEDAFKVL+ G GILVS PKDT+A YS+++PAEVM
Sbjct: 312 GLCGKEDVLPIYVGDDKTDEDAFKVLKANSIGFGILVSSVPKDTDAFYSVRDPAEVM 368
>Os04g0554000
Length = 358
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 42/54 (77%)
Query: 44 DCTNVLPVYIGDDRTDEDAFKVLRKRGQGIGILVSKYPKDTNASYSLQEPAEVM 97
D VLP+YIGDD+TDEDAFKVLR+R G GILVS+ PK + A + L+ P+EVM
Sbjct: 288 DSETVLPIYIGDDKTDEDAFKVLRERKNGCGILVSQVPKKSEAFFMLRGPSEVM 341
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,861,386
Number of extensions: 146024
Number of successful extensions: 272
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 10
Length of query: 139
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 49
Effective length of database: 12,336,541
Effective search space: 604490509
Effective search space used: 604490509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)