FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0753000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Trehalose-6-phosphate phosphatase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.06 (0.0462) R2 : 0.661
β1 : -1.37 (0.197) R2dD : 0.0564 R2D : 0.14
β2 : 4.01 (0.177) R2dC : 1.06 R2C : -0.332
β3 : -3.71 (0.192) R2dE : 0.784 R2E : -0.656
β4 : -4.73 (0.656) R2dD*C : 0.0967 R2D*C : -0.0159
β5 : 6.92 (0.936) R2dD*E : 0.115 R2D*E : 0.0079
γ1 : 0.189 (0.0993) R2dN8 : 0.00409 R2N8 : -0.0176
σ : 0.827
deviance : 310.11
__
_____
C
peak time of C : 9.98
E
wheather : temperature
threshold : 9.97
memory length : 709
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.2
open length of G : 6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
310.11 0.827 5.06 -1.37 4.01 -3.71 -4.73 6.92 0.189 9.98 9.97 709 23.2 6
346.25 0.867 5.1 -2.22 3.87 -3.48 -1 -- 0.0845 10.2 11.42 683 23.5 6.15
359.9 0.884 5.09 -1.64 4.2 -3.98 -- 3.63 0.145 9.46 10.39 687 23.5 5.09
345.83 0.866 5.18 -2.38 4.19 -3.61 -- -- -0.0149 10.5 10.66 637 0.39 6.02
463.55 1 5.12 -0.698 -- -3.27 -- 4.8 0.382 -- -5.2 3290 20.3 6.04
402.85 0.941 5.31 -2.58 2.16 -- -2.65 -- -0.333 13.8 -- -- -- --
430.32 0.971 5.32 -2.66 2.16 -- -- -- -0.349 13.7 -- -- -- --
439.92 0.977 5.16 -1.17 -- -3.66 -- -- 0.443 -- -12.93 3358 15.8 12.2
474.67 1.01 5.05 -- 4.38 -4.06 -- -- 0.378 10.3 12.9 649 0.262 5.95
714.27 1.25 5.35 -2.75 -- -- -- -- -0.397 -- -- -- -- --
617.14 1.16 5.25 -- 2.21 -- -- -- -0.0525 13.7 -- -- -- --
508.23 1.05 5.19 -- -- -3.9 -- -- 0.334 -- -14.25 3347 16 12
913.75 1.41 5.28 -- -- -- -- -- -0.092 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 311.17 temperature 10 720 > th dose dependent rect. 23 6
11 321.00 temperature 20 270 > th dose dependent rect. 24 11
18 323.40 temperature 15 720 > th dose dependent rect. 2 1
23 324.45 temperature 20 720 > th dose independent rect. 2 1
34 328.27 temperature 20 720 > th dose independent rect. 1 3
38 328.45 temperature 30 720 < th dose dependent rect. 21 11
57 330.68 temperature 10 720 > th dose dependent rect. 18 17
64 331.19 temperature 10 270 > th dose dependent sin 7 NA
70 331.62 temperature 10 720 > th dose dependent sin 9 NA
120 333.79 temperature 30 720 < th dose dependent sin 9 NA
190 335.52 temperature 20 90 > th dose dependent rect. 17 21
227 336.38 temperature 30 720 < th dose dependent rect. 3 5
308 338.27 temperature 15 270 > th dose dependent rect. 15 22
315 338.43 temperature 30 720 < th dose dependent rect. 5 3
529 342.32 temperature 10 720 > th dose dependent rect. 17 13
587 343.12 temperature 20 720 < th dose independent rect. 23 8
613 343.43 temperature 20 720 > th dose independent rect. 23 14
644 343.81 temperature 20 720 > th dose independent rect. 23 12
805 345.54 temperature 20 720 > th dose independent sin 9 NA
875 346.42 temperature 20 720 < th dose independent sin 8 NA
991 347.61 temperature 20 720 < th dose independent rect. 22 16