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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0369400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Trehalose-6-phosphate phosphatase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0429) R2 : 0.000115
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0207 (0.0903) R2dN8 : 0.000149 R2N8 : 0.000115
σ : 0.807
deviance : 299.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
268.4 0.77 3.27 -0.131 0.267 0.558 0.147 -0.595 0.26 10.6 23.8 1040 -- --
269.09 0.764 3.29 -0.355 0.275 0.525 0.0134 -- 0.192 10.7 23.9 1052 -- --
268.48 0.763 3.27 -0.146 0.264 0.558 -- -0.539 0.258 10.8 23.84 1040 -- --
269.08 0.764 3.29 -0.35 0.274 0.525 -- -- 0.191 10.8 23.81 1059 -- --
272.25 0.768 3.27 -0.0969 -- 0.619 -- -0.646 0.286 -- 24 995 -- --
282.14 0.787 3.34 -0.557 0.37 -- 0.0218 -- -0.0387 11.3 -- -- -- --
282.14 0.787 3.34 -0.556 0.37 -- -- -- -0.0386 11.3 -- -- -- --
273.12 0.77 3.3 -0.328 -- 0.592 -- -- 0.21 -- 23.98 993 -- --
272.11 0.768 3.29 -- 0.261 0.591 -- -- 0.239 10.5 23.9 1059 -- --
290.7 0.797 3.35 -0.565 -- -- -- -- -0.042 -- -- -- -- --
290.29 0.797 3.33 -- 0.375 -- -- -- 0.0234 11.4 -- -- -- --
275.74 0.773 3.28 -- -- 0.656 -- -- 0.269 -- 24 995 -- --
299.13 0.807 3.34 -- -- -- -- -- 0.0207 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 262.34 wind 9.0 4320 < th dose dependent rect. 4 1
2 262.38 wind 1.0 4320 > th dose dependent rect. 4 1
4 264.79 wind 7.0 14400 > th dose independent rect. 5 2
5 265.12 wind 7.0 4320 > th dose dependent rect. 20 15
7 265.45 wind 5.0 4320 < th dose independent rect. 1 9
9 265.48 wind 7.0 4320 > th dose independent rect. 20 15
10 265.61 wind 3.0 4320 < th dose independent rect. 4 1
11 265.72 wind 5.0 4320 > th dose independent rect. 1 9
13 265.75 radiation 10.0 90 < th dose dependent rect. 10 3
14 265.78 wind 7.0 4320 < th dose independent rect. 20 15
18 265.98 radiation 10.0 90 < th dose independent rect. 10 4
19 265.99 precipitation 0.1 4320 < th dose independent rect. 17 1
20 265.99 precipitation 0.1 4320 < th dose dependent rect. 17 1
25 266.25 wind 3.0 4320 > th dose independent rect. 4 1
27 266.27 wind 7.0 14400 < th dose independent rect. 5 2
37 266.73 wind 5.0 4320 > th dose independent rect. 4 5
39 266.79 wind 3.0 4320 > th dose dependent rect. 2 7
44 266.87 wind 9.0 4320 > th dose dependent sin 9 NA
45 266.93 precipitation 0.1 4320 > th dose independent rect. 17 1
52 267.20 temperature 20.0 4320 < th dose dependent rect. 20 2
67 267.44 temperature 25.0 4320 < th dose dependent rect. 17 1
69 267.46 radiation 40.0 14400 < th dose independent rect. 16 8
72 267.48 temperature 25.0 4320 < th dose independent rect. 12 1
74 267.52 wind 9.0 4320 > th dose independent sin 9 NA
80 267.56 wind 5.0 4320 > th dose dependent rect. 5 4
102 267.78 wind 9.0 4320 < th dose independent sin 9 NA
105 267.81 wind 5.0 14400 > th dose dependent rect. 5 1
108 267.85 temperature 20.0 4320 < th dose independent rect. 6 16
112 267.86 temperature 25.0 4320 < th dose dependent rect. 9 12
115 267.87 temperature 20.0 4320 < th dose dependent rect. 7 17
127 267.96 temperature 20.0 1440 > th dose dependent rect. 2 1
133 268.00 temperature 20.0 4320 > th dose independent rect. 7 16
135 268.01 wind 1.0 43200 < th dose independent rect. 20 1
151 268.12 temperature 25.0 4320 > th dose independent rect. 12 1
167 268.23 temperature 20.0 4320 < th dose independent rect. 7 1
178 268.27 wind 5.0 4320 > th dose dependent rect. 22 13
183 268.29 temperature 20.0 4320 < th dose independent sin 21 NA
191 268.32 temperature 20.0 4320 > th dose independent rect. 7 1
194 268.32 temperature 25.0 4320 < th dose dependent rect. 15 4
212 268.38 temperature 20.0 4320 > th dose independent sin 21 NA
222 268.40 humidity 90.0 14400 > th dose independent rect. 10 1
243 268.48 precipitation 0.1 14400 > th dose independent rect. 6 1
247 268.48 precipitation 0.1 14400 > th dose dependent rect. 6 1
254 268.51 temperature 20.0 4320 < th dose dependent sin 20 NA
280 268.62 radiation 40.0 14400 < th dose independent rect. 16 5
281 268.62 wind 1.0 4320 < th dose dependent rect. 5 2
319 268.75 humidity 90.0 4320 > th dose dependent rect. 14 3
335 268.80 humidity 90.0 4320 > th dose dependent rect. 15 1
359 268.91 temperature 25.0 4320 < th dose dependent rect. 11 2
376 269.04 radiation 40.0 14400 < th dose independent rect. 16 13
393 269.09 temperature 25.0 4320 < th dose dependent rect. 10 4
395 269.10 precipitation 0.1 14400 < th dose independent rect. 6 1
396 269.10 radiation 1.0 14400 > th dose independent rect. 8 3
397 269.10 precipitation 0.1 14400 < th dose dependent rect. 6 1
398 269.10 humidity 90.0 4320 > th dose dependent rect. 10 7
425 269.20 radiation 1.0 14400 < th dose dependent rect. 9 1
442 269.23 temperature 25.0 1440 > th dose dependent rect. 12 1
454 269.26 temperature 20.0 4320 < th dose dependent rect. 7 1
461 269.31 radiation 1.0 4320 < th dose independent rect. 4 1
471 269.34 wind 1.0 14400 < th dose dependent rect. 15 6
480 269.36 radiation 1.0 1440 < th dose dependent rect. 23 6
491 269.40 radiation 40.0 4320 < th dose dependent rect. 18 11
496 269.43 temperature 25.0 1440 > th dose independent rect. 6 7
506 269.45 humidity 90.0 4320 > th dose independent rect. 15 2
507 269.45 wind 1.0 43200 > th dose independent rect. 16 3
508 269.45 radiation 1.0 14400 < th dose independent rect. 8 3
515 269.45 wind 9.0 4320 > th dose dependent rect. 22 12
516 269.46 wind 1.0 14400 < th dose dependent rect. 13 8
523 269.47 radiation 1.0 14400 < th dose dependent rect. 6 1
626 269.69 radiation 1.0 10 < th dose independent rect. 13 1
637 269.69 radiation 1.0 10 < th dose dependent rect. 13 1
664 269.73 wind 1.0 43200 > th dose independent rect. 20 1
676 269.76 radiation 30.0 43200 < th dose independent rect. 7 1
683 269.77 temperature 25.0 1440 < th dose independent rect. 17 4
688 269.78 humidity 90.0 14400 < th dose independent rect. 10 1
705 269.83 wind 1.0 1440 < th dose dependent rect. 24 7
716 269.85 radiation 40.0 14400 < th dose independent rect. 16 1
718 269.85 radiation 30.0 43200 < th dose independent rect. 4 4
720 269.85 temperature 25.0 4320 < th dose independent rect. 11 7
722 269.85 radiation 30.0 43200 < th dose independent rect. 18 14
728 269.86 radiation 30.0 43200 < th dose independent rect. 20 12
740 269.88 radiation 30.0 43200 < th dose independent rect. 22 10
744 269.89 radiation 40.0 14400 < th dose independent rect. 16 3
754 269.90 wind 1.0 1440 < th dose dependent rect. 21 10
756 269.91 temperature 25.0 1440 > th dose independent rect. 18 1
771 269.93 radiation 40.0 4320 < th dose dependent rect. 4 1
782 269.96 temperature 25.0 1440 < th dose independent rect. 6 7
793 269.97 temperature 20.0 720 > th dose dependent rect. 21 18
798 269.99 temperature 15.0 43200 < th dose independent rect. 24 1
803 270.00 wind 3.0 43200 < th dose dependent rect. 18 1
807 270.01 wind 1.0 43200 < th dose independent rect. 15 4
833 270.05 temperature 15.0 43200 > th dose independent rect. 24 2
850 270.07 radiation 30.0 43200 > th dose dependent rect. 7 1
868 270.08 temperature 20.0 43200 > th dose independent rect. 12 1
878 270.09 temperature 15.0 14400 < th dose dependent rect. 4 1
887 270.10 precipitation 0.1 4320 > th dose dependent rect. 17 1
889 270.11 temperature 25.0 1440 < th dose independent rect. 19 1
905 270.13 humidity 80.0 14400 > th dose independent rect. 7 1
906 270.13 humidity 80.0 90 > th dose independent rect. 12 1
910 270.14 temperature 15.0 43200 > th dose independent rect. 22 4
917 270.14 temperature 20.0 720 > th dose dependent rect. 21 16
960 270.20 humidity 80.0 90 > th dose dependent rect. 12 1
969 270.21 radiation 1.0 1440 < th dose dependent rect. 21 8