Os03g0386500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Trehalose-6-phosphate phosphatase.
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Os03g0386500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Trehalose-6-phosphate phosphatase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 282.87 | 0.79 | 6.47 | 0.468 | 3.19 | 2.75 | -1.58 | -1.6 | 0.455 | 8.36 | 30.85 | 89 | 15.3 | 17.9 |
| 287.94 | 0.79 | 6.48 | 0.329 | 3.19 | 2.76 | -1.08 | -- | 0.432 | 8.36 | 31.01 | 92 | 15.3 | 17.8 |
| 289.25 | 0.792 | 6.47 | 0.338 | 3.16 | 2.7 | -- | -0.881 | 0.431 | 8.38 | 31.1 | 99 | 15.5 | 17.6 |
| 290.72 | 0.794 | 6.49 | 0.26 | 3.15 | 2.74 | -- | -- | 0.369 | 8.42 | 31.52 | 111 | 15.5 | 17.3 |
| 315.53 | 0.827 | 6.58 | 0.364 | -- | 4.51 | -- | -1.86 | 0.376 | -- | 45.94 | 608 | 20.2 | 10.3 |
| 354.95 | 0.883 | 6.55 | -0.0555 | 3.35 | -- | -1.17 | -- | 0.14 | 6.61 | -- | -- | -- | -- |
| 358.39 | 0.887 | 6.55 | -0.0726 | 3.34 | -- | -- | -- | 0.144 | 6.64 | -- | -- | -- | -- |
| 318.51 | 0.831 | 6.57 | 0.136 | -- | 4.45 | -- | -- | 0.355 | -- | 44.08 | 575 | 20.5 | 10.3 |
| 292.31 | 0.796 | 6.5 | -- | 3.16 | 2.69 | -- | -- | 0.361 | 8.41 | 31.56 | 113 | 15.4 | 17.3 |
| 940.24 | 1.43 | 6.62 | 0.00661 | -- | -- | -- | -- | 0.211 | -- | -- | -- | -- | -- |
| 358.53 | 0.886 | 6.55 | -- | 3.34 | -- | -- | -- | 0.152 | 6.64 | -- | -- | -- | -- |
| 318.9 | 0.832 | 6.58 | -- | -- | 4.52 | -- | -- | 0.337 | -- | 43.83 | 568 | 20.6 | 10.2 |
| 940.24 | 1.43 | 6.62 | -- | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 284.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 7 | 288.63 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 9 |
| 25 | 291.64 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 13 |
| 77 | 295.57 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 9 |
| 97 | 297.93 | temperature | 25 | 270 | < th | dose dependent | sin | 9 | NA |
| 98 | 297.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 115 | 299.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 119 | 299.43 | temperature | 15 | 270 | > th | dose dependent | sin | 9 | NA |
| 120 | 299.48 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 130 | 300.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 133 | 300.28 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 144 | 300.73 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 150 | 300.94 | temperature | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 195 | 302.39 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 199 | 302.42 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 201 | 302.43 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 207 | 302.53 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 18 | 4 |
| 219 | 302.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 268 | 303.06 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 273 | 303.14 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 283 | 303.22 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 289 | 303.25 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 16 | 6 |
| 300 | 303.31 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 302 | 303.31 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 433 | 303.93 | atmosphere | 995 | 14400 | > th | dose dependent | sin | 17 | NA |
| 434 | 303.93 | wind | 7 | 43200 | < th | dose dependent | rect. | 14 | 5 |
| 494 | 304.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 529 | 304.31 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 554 | 304.38 | wind | 7 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 596 | 304.53 | atmosphere | 1015 | 14400 | < th | dose dependent | sin | 17 | NA |
| 597 | 304.53 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 660 | 304.74 | wind | 1 | 43200 | > th | dose dependent | rect. | 15 | 4 |
| 705 | 304.85 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 721 | 304.91 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 14 |
| 722 | 304.91 | wind | 5 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 763 | 305.04 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 785 | 305.12 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 798 | 305.14 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 875 | 305.37 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 6 |
| 897 | 305.43 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 975 | 305.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 14 |