FiT-DB / Search/ Help/ Sample detail

Os08g0409100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Trehalose-phosphatase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0311) R2 : 0.873
β1 : -2.42 (0.114) R2dD : 0.132 R2D : 0.0867
β2 : 2.95 (0.0808) R2dC : 0.454 R2C : 0.634
β3 : 2.28 (0.124) R2dE : 0.116 R2E : 0.258
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.836 (0.0671) R2dN8 : 0.0602 R2N8 : -0.00455
σ : 0.578
deviance : 153.89
__
_____
C
peak time of C : 11.2
E
wheather : temperature
threshold : 8.251
memory length : 16
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.9
open length of G : 20

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.54 0.567 11.2 -2.65 2.98 2.25 0.731 -3.2 -0.898 11.1 8.845 11 20 20
153.91 0.578 11.2 -2.43 2.95 2.29 -0.0101 -- -0.84 11.2 8.266 16 19.9 20
147.19 0.565 11.2 -2.57 2.97 2.26 -- -2.49 -0.884 11.2 8.489 12 20 20
153.89 0.578 11.2 -2.42 2.95 2.28 -- -- -0.836 11.2 8.251 16 19.9 20
524.37 1.07 11.4 -3.27 -- 4.59 -- -2.38 -1.27 -- 17.13 24 20.7 19.2
239.32 0.725 11.1 -2.21 3.67 -- 0.174 -- -0.628 10.5 -- -- -- --
239.44 0.725 11.1 -2.2 3.67 -- -- -- -0.628 10.5 -- -- -- --
518.66 1.06 11.4 -3.03 -- 4.78 -- -- -1.39 -- 17.76 18 20.9 19
299.61 0.806 11.1 -- 3.18 2 -- -- -0.5 11.4 1.025 15 19.9 20
1065.92 1.53 11.2 -2.27 -- -- -- -- -0.643 -- -- -- -- --
367.52 0.897 11.1 -- 3.69 -- -- -- -0.382 10.5 -- -- -- --
733.72 1.26 11.3 -- -- 4.23 -- -- -0.857 -- 16.92 9 21 19
1201.6 1.62 11.2 -- -- -- -- -- -0.391 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 148.58 temperature 10.0 10 > th dose dependent rect. 20 20
5 154.94 atmosphere 995.0 270 > th dose dependent rect. 15 2
8 155.57 atmosphere 1000.0 10 > th dose dependent rect. 16 4
11 156.49 atmosphere 1000.0 90 > th dose dependent rect. 15 5
34 161.90 atmosphere 1000.0 270 > th dose independent rect. 15 2
44 164.77 atmosphere 1000.0 270 > th dose independent rect. 23 20
63 166.66 atmosphere 1000.0 10 > th dose independent rect. 2 18
64 166.67 radiation 20.0 10 < th dose dependent rect. 2 18
72 167.47 atmosphere 1005.0 10 > th dose independent rect. 16 4
73 167.58 atmosphere 1000.0 90 > th dose independent rect. 2 17
78 167.83 atmosphere 1000.0 270 > th dose independent rect. 14 15
89 168.65 temperature 10.0 270 > th dose dependent rect. 19 5
105 169.67 precipitation 0.1 270 < th dose independent rect. 17 22
106 169.67 precipitation 0.1 270 < th dose dependent rect. 17 22
110 170.30 radiation 20.0 10 < th dose dependent rect. 13 7
112 170.34 radiation 10.0 43200 < th dose dependent rect. 21 6
124 171.11 radiation 20.0 10 < th dose dependent rect. 10 10
131 171.38 atmosphere 995.0 10 > th dose dependent rect. 2 18
133 171.51 humidity 50.0 270 > th dose independent rect. 17 22
138 171.82 temperature 15.0 90 > th dose independent rect. 20 19
150 172.41 temperature 10.0 10 > th dose dependent rect. 20 6
172 173.17 radiation 40.0 90 < th dose dependent rect. 15 4
179 173.66 wind 9.0 270 < th dose independent rect. 15 2
188 173.86 wind 1.0 270 > th dose independent rect. 15 2
193 173.98 temperature 10.0 270 > th dose independent rect. 15 2
195 173.98 atmosphere 1010.0 270 < th dose independent rect. 15 2
197 173.98 temperature 10.0 270 > th dose independent rect. 17 22
200 174.08 radiation 40.0 270 < th dose independent rect. 15 2
201 174.08 precipitation 0.1 270 < th dose independent rect. 15 2
202 174.08 precipitation 0.1 270 < th dose dependent rect. 15 2
204 174.09 wind 9.0 270 < th dose independent rect. 17 22
207 174.15 radiation 10.0 10 < th dose independent rect. 13 7
209 174.18 radiation 1.0 30 < th dose independent sin 0 NA
210 174.18 precipitation 0.1 10 < th dose independent rect. 20 20
211 174.18 precipitation 0.1 10 < th dose dependent rect. 20 20
234 174.70 radiation 1.0 30 > th dose independent sin 0 NA
236 174.77 wind 9.0 10 < th dose independent rect. 20 20
254 175.08 temperature 15.0 10 > th dose independent rect. 20 20
261 175.22 radiation 30.0 90 < th dose independent rect. 15 5
280 175.73 radiation 1.0 270 > th dose independent rect. 4 10
294 175.83 atmosphere 1000.0 10 > th dose independent rect. 16 15
315 176.44 precipitation 0.1 10 < th dose independent rect. 16 4
316 176.44 precipitation 0.1 10 < th dose dependent rect. 16 4
318 176.47 temperature 10.0 10 > th dose independent rect. 16 4
320 176.47 atmosphere 1010.0 10 < th dose independent rect. 16 4
328 176.61 humidity 50.0 10 > th dose independent rect. 16 4
332 176.67 wind 1.0 10 > th dose independent rect. 16 4
343 176.84 radiation 10.0 10 < th dose dependent sin 0 NA
352 177.11 wind 9.0 10 < th dose independent rect. 16 4
353 177.11 radiation 10.0 10 < th dose independent rect. 10 10
359 177.19 radiation 10.0 10 < th dose independent rect. 2 18
369 177.24 radiation 20.0 10 < th dose dependent rect. 14 18
390 177.52 humidity 50.0 90 > th dose independent rect. 20 19
398 177.70 humidity 50.0 10 > th dose independent rect. 20 20
469 178.52 temperature 15.0 270 > th dose independent rect. 4 10
492 178.84 wind 1.0 90 > th dose independent rect. 15 5
508 179.03 temperature 15.0 270 > th dose independent rect. 19 4
509 179.04 humidity 90.0 270 < th dose independent rect. 15 2
520 179.20 temperature 15.0 10 > th dose independent rect. 20 6
557 179.54 atmosphere 995.0 10 > th dose independent rect. 20 20
590 179.96 temperature 10.0 270 > th dose dependent rect. 5 9
628 180.51 temperature 10.0 1440 > th dose independent rect. 17 4
631 180.51 radiation 30.0 1440 < th dose independent rect. 17 4
637 180.51 precipitation 0.1 270 < th dose independent rect. 4 10
638 180.51 temperature 10.0 1440 > th dose independent rect. 21 20
641 180.51 precipitation 0.1 270 < th dose dependent rect. 4 10
647 180.56 wind 1.0 90 > th dose independent rect. 2 17
656 180.66 humidity 70.0 90 > th dose independent rect. 19 7
658 180.68 precipitation 0.1 10 < th dose independent rect. 20 6
659 180.68 precipitation 0.1 10 < th dose dependent rect. 20 6
667 180.73 atmosphere 995.0 270 > th dose independent rect. 19 19
677 180.84 temperature 15.0 90 > th dose independent rect. 19 7
696 181.08 radiation 40.0 270 < th dose independent rect. 14 14
713 181.29 precipitation 0.1 270 < th dose independent rect. 19 4
715 181.29 precipitation 0.1 270 < th dose dependent rect. 19 4
748 181.58 temperature 30.0 10 < th dose independent rect. 20 6
749 181.58 humidity 50.0 10 > th dose independent rect. 20 6
752 181.58 atmosphere 995.0 10 > th dose independent rect. 20 6
753 181.58 radiation 1.0 10 < th dose independent rect. 20 6
758 181.58 temperature 10.0 10 > th dose independent rect. 2 18
760 181.58 atmosphere 1015.0 10 < th dose independent rect. 2 18
763 181.58 radiation 1.0 10 < th dose dependent rect. 20 6
772 181.66 wind 9.0 10 < th dose independent rect. 20 6
802 181.86 radiation 10.0 10 < th dose independent rect. 8 12
816 182.02 radiation 1.0 1440 < th dose dependent rect. 21 6
830 182.16 humidity 60.0 270 > th dose independent rect. 19 4
858 182.23 precipitation 0.1 90 < th dose independent rect. 19 7
859 182.23 precipitation 0.1 90 < th dose dependent rect. 19 7
864 182.29 temperature 30.0 90 < th dose independent rect. 19 7
865 182.29 humidity 50.0 90 > th dose independent rect. 19 7
867 182.29 atmosphere 995.0 90 > th dose independent rect. 19 7
868 182.29 radiation 1.0 90 < th dose independent rect. 19 7
873 182.29 temperature 10.0 90 > th dose independent rect. 2 17
874 182.29 atmosphere 1015.0 90 < th dose independent rect. 2 17
875 182.29 radiation 1.0 270 < th dose dependent rect. 19 4
877 182.29 radiation 1.0 90 < th dose dependent rect. 19 7
885 182.30 temperature 30.0 270 < th dose independent rect. 19 4
887 182.30 atmosphere 995.0 270 > th dose independent rect. 19 4
888 182.30 radiation 1.0 270 < th dose independent rect. 19 4
894 182.30 temperature 10.0 270 > th dose independent rect. 23 20
900 182.31 radiation 1.0 90 < th dose independent rect. 5 14
903 182.34 wind 9.0 270 < th dose independent rect. 19 4
907 182.39 wind 9.0 90 < th dose independent rect. 19 7
913 182.48 atmosphere 1010.0 10 < th dose independent rect. 20 6
932 182.66 atmosphere 1015.0 10 < th dose independent rect. 20 20
956 182.80 temperature 30.0 10 < th dose dependent rect. 2 18
961 182.85 humidity 50.0 270 > th dose independent rect. 4 10
978 182.95 wind 1.0 270 > th dose independent rect. 19 4
981 182.97 wind 1.0 270 > th dose independent rect. 24 19
982 182.97 temperature 10.0 10 > th dose dependent rect. 7 9
995 183.04 atmosphere 995.0 270 > th dose independent rect. 4 10
996 183.04 atmosphere 1015.0 270 < th dose independent rect. 4 10
997 183.04 temperature 10.0 270 > th dose independent rect. 14 14