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Os07g0485000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Trehalose-6-phosphate phosphatase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.3 (0.0354) R2 : 0.618
β1 : -2.62 (0.17) R2dD : 0.39 R2D : 0.123
β2 : 1.42 (0.0804) R2dC : 0.233 R2C : 0.232
β3 : 1.64 (0.172) R2dE : 0.161 R2E : -0.0727
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.416 (0.0852) R2dN8 : 0.0403 R2N8 : 0.114
σ : 0.634
deviance : 185.03
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_____
C
peak time of C : 0.33
E
wheather : temperature
threshold : 19.3
memory length : 7059
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
173.4 0.619 6.5 -3.68 1.31 1.14 0.939 -7.44 0.192 0.074 25.6 4371 -- --
184.51 0.633 6.32 -2.85 1.38 1.59 0.446 -- 0.346 0.112 18.4 17184 -- --
172.94 0.612 6.53 -4.02 1.39 1.22 -- -9.05 0.227 0.123 27.1 4442 -- --
185.03 0.634 6.3 -2.62 1.42 1.64 -- -- 0.416 0.33 19.3 7059 -- --
280.7 0.78 6.5 -4 -- 1.65 -- -8.79 0.178 -- 26.4 3921 -- --
219.59 0.695 6.21 -1.48 1.38 -- 0.829 -- 0.854 0.122 -- -- -- --
222.54 0.699 6.21 -1.51 1.37 -- -- -- 0.85 0.187 -- -- -- --
295.41 0.801 6.28 -2.58 -- 1.82 -- -- 0.441 -- 19 5178 -- --
267.51 0.762 6.23 -- 1.29 0.672 -- -- 0.815 23.5 22.43 1242 -- --
341.43 0.863 6.19 -1.46 -- -- -- -- 0.871 -- -- -- -- --
282.55 0.786 6.18 -- 1.35 -- -- -- 1.02 0.127 -- -- -- --
353.47 0.876 6.22 -- -- 0.949 -- -- 0.749 -- 22.2 881 -- --
397.99 0.931 6.15 -- -- -- -- -- 1.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 162.99 humidity 80.0 43200 > th dose dependent rect. 12 2
6 164.70 atmosphere 1005.0 43200 < th dose independent rect. 3 1
7 164.75 humidity 80.0 43200 < th dose dependent rect. 8 1
8 164.89 humidity 90.0 43200 > th dose independent rect. 13 1
12 165.32 atmosphere 1005.0 43200 > th dose independent rect. 11 2
16 165.55 precipitation 0.1 43200 > th dose independent rect. 9 1
17 165.55 precipitation 0.1 43200 > th dose dependent rect. 9 1
18 165.60 precipitation 0.1 43200 < th dose independent rect. 9 1
19 165.60 precipitation 0.1 43200 < th dose dependent rect. 9 1
20 165.80 atmosphere 1005.0 43200 < th dose independent rect. 12 1
33 166.61 wind 9.0 43200 < th dose independent rect. 18 1
35 166.62 humidity 80.0 43200 < th dose dependent rect. 7 3
38 166.68 humidity 70.0 43200 > th dose independent rect. 21 13
39 166.69 radiation 1.0 43200 > th dose independent rect. 13 1
40 166.70 radiation 1.0 43200 < th dose independent rect. 13 1
41 166.70 radiation 1.0 43200 < th dose dependent rect. 13 1
42 166.71 atmosphere 1005.0 43200 > th dose independent rect. 4 1
52 166.94 atmosphere 1005.0 43200 > th dose independent rect. 1 4
55 166.95 wind 9.0 43200 > th dose dependent rect. 18 3
58 167.02 humidity 70.0 43200 > th dose independent rect. 4 6
62 167.10 humidity 70.0 43200 > th dose independent rect. 7 3
71 167.30 humidity 70.0 43200 < th dose independent rect. 21 13
81 167.51 wind 5.0 43200 < th dose independent rect. 14 1
89 167.68 wind 9.0 43200 > th dose independent rect. 18 1
92 167.70 wind 5.0 43200 > th dose independent rect. 14 1
95 167.71 atmosphere 1005.0 43200 > th dose independent rect. 22 7
97 167.77 atmosphere 1005.0 43200 < th dose independent rect. 23 5
112 167.94 atmosphere 1005.0 43200 > th dose independent rect. 11 19
144 168.25 humidity 80.0 43200 < th dose independent rect. 12 1
160 168.37 atmosphere 1005.0 43200 < th dose independent rect. 11 18
196 168.53 humidity 70.0 43200 < th dose independent rect. 4 7
203 168.55 humidity 70.0 43200 < th dose independent rect. 7 4
209 168.60 atmosphere 1005.0 43200 > th dose independent rect. 18 12
211 168.60 atmosphere 1005.0 43200 > th dose independent rect. 22 19
223 168.64 atmosphere 1005.0 43200 > th dose independent rect. 1 16
232 168.67 temperature 25.0 14400 < th dose independent rect. 17 1
244 168.70 atmosphere 1005.0 43200 > th dose independent rect. 11 13
276 168.77 humidity 80.0 43200 < th dose independent rect. 12 4
278 168.77 wind 3.0 43200 > th dose dependent rect. 14 1
279 168.78 temperature 25.0 43200 > th dose independent rect. 12 1
286 168.80 atmosphere 1005.0 43200 > th dose independent sin 13 NA
294 168.81 humidity 80.0 43200 < th dose independent rect. 15 1
327 168.88 atmosphere 1005.0 43200 > th dose independent rect. 18 23
344 168.91 atmosphere 1005.0 43200 > th dose independent rect. 1 23
360 168.96 atmosphere 1005.0 43200 > th dose independent no NA NA
364 168.97 humidity 70.0 43200 < th dose independent rect. 8 2
382 169.00 humidity 70.0 43200 < th dose dependent rect. 11 1
407 169.05 atmosphere 1005.0 43200 > th dose independent rect. 16 23
408 169.06 temperature 25.0 14400 > th dose independent rect. 17 1
410 169.06 atmosphere 1005.0 43200 < th dose independent rect. 11 13
413 169.06 atmosphere 1005.0 43200 > th dose independent rect. 4 23
418 169.08 temperature 25.0 43200 > th dose independent rect. 9 6
428 169.09 atmosphere 1005.0 43200 < th dose independent rect. 22 21
436 169.10 atmosphere 1005.0 43200 > th dose independent rect. 14 23
461 169.13 atmosphere 1005.0 43200 < th dose independent rect. 1 18
486 169.17 atmosphere 1005.0 43200 < th dose independent rect. 1 16
491 169.19 atmosphere 1005.0 43200 < th dose independent rect. 18 11
544 169.26 atmosphere 1005.0 43200 < th dose independent sin 14 NA
577 169.30 temperature 25.0 4320 < th dose independent rect. 10 1
613 169.36 atmosphere 1005.0 43200 < th dose independent rect. 1 23
626 169.39 temperature 25.0 4320 > th dose independent rect. 10 1
635 169.39 atmosphere 1005.0 43200 < th dose independent rect. 18 23
652 169.42 atmosphere 1005.0 43200 < th dose independent no NA NA
666 169.44 atmosphere 1005.0 43200 > th dose independent rect. 22 2
691 169.47 temperature 25.0 43200 < th dose independent rect. 9 6
712 169.49 atmosphere 1005.0 43200 < th dose independent rect. 16 23
722 169.51 temperature 25.0 14400 > th dose dependent rect. 12 1
743 169.55 temperature 25.0 43200 < th dose independent rect. 12 1
766 169.58 atmosphere 1005.0 43200 < th dose independent rect. 14 23
787 169.62 radiation 20.0 43200 < th dose dependent rect. 8 1
854 169.73 humidity 70.0 43200 > th dose independent rect. 19 1
866 169.74 temperature 25.0 14400 > th dose dependent rect. 14 1
906 169.82 radiation 10.0 43200 > th dose independent rect. 5 1
922 169.83 radiation 1.0 43200 < th dose independent rect. 18 3
926 169.83 radiation 1.0 43200 < th dose independent rect. 18 9
940 169.84 wind 9.0 43200 < th dose dependent rect. 14 1
952 169.86 radiation 1.0 43200 < th dose independent rect. 18 6
984 169.92 humidity 80.0 43200 > th dose dependent rect. 10 1
990 169.93 temperature 25.0 14400 > th dose dependent rect. 12 3