BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0260600 Os08g0260600|AK108529
(273 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0260600 CD9/CD37/CD63 antigen family protein 454 e-128
Os08g0443800 CD9/CD37/CD63 antigen family protein 243 9e-65
Os09g0425900 Similar to Senescence-associated protein 5 241 3e-64
Os10g0503600 CD9/CD37/CD63 antigen family protein 150 1e-36
AK073982 150 1e-36
Os02g0728800 149 2e-36
Os01g0977100 CD9/CD37/CD63 antigen family protein 146 2e-35
Os06g0572400 CD9/CD37/CD63 antigen family protein 135 2e-32
Os02g0219700 CD9/CD37/CD63 antigen family protein 132 2e-31
Os06g0653100 CD9/CD37/CD63 antigen family protein 124 9e-29
Os03g0853200 CD9/CD37/CD63 antigen family protein 109 2e-24
Os05g0122800 CD9/CD37/CD63 antigen family protein 98 6e-21
Os12g0249100 97 1e-20
Os05g0126100 CD9/CD37/CD63 antigen family protein 81 9e-16
Os03g0853000 80 2e-15
>Os08g0260600 CD9/CD37/CD63 antigen family protein
Length = 273
Score = 454 bits (1167), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/273 (83%), Positives = 228/273 (83%)
Query: 1 MAPRCSNAVFAAINXXXXXXXXXXXXXXIYYGAPHRGGGGVTECERFLRAPALALGGAIV 60
MAPRCSNAVFAAIN IYYGAPHRGGGGVTECERFLRAPALALGGAIV
Sbjct: 1 MAPRCSNAVFAAINVVTLLLGAAVLAAGIYYGAPHRGGGGVTECERFLRAPALALGGAIV 60
Query: 61 AVSLAGLAGACCRATPXXXXXXXXXXXXXXXXXCFGVFALVVTNAGAGRAVSGRGFREYH 120
AVSLAGLAGACCRATP CFGVFALVVTNAGAGRAVSGRGFREYH
Sbjct: 61 AVSLAGLAGACCRATPLLWAYLLLTGLLILAAACFGVFALVVTNAGAGRAVSGRGFREYH 120
Query: 121 LGDYSTWLRRSVEDGGHWARIRSCLVDTGVCRSLKSNQTLDEFVNSNLSPLQSGCCKPPT 180
LGDYSTWLRRSVEDGGHWARIRSCLVDTGVCRSLKSNQTLDEFVNSNLSPLQSGCCKPPT
Sbjct: 121 LGDYSTWLRRSVEDGGHWARIRSCLVDTGVCRSLKSNQTLDEFVNSNLSPLQSGCCKPPT 180
Query: 181 ACNFTYQNETYWIKPPTPSNYSDPDCNSWSNDQSELCYGCQSCKAGVLGNLRSSWKKIXX 240
ACNFTYQNETYWIKPPTPSNYSDPDCNSWSNDQSELCYGCQSCKAGVLGNLRSSWKKI
Sbjct: 181 ACNFTYQNETYWIKPPTPSNYSDPDCNSWSNDQSELCYGCQSCKAGVLGNLRSSWKKIAF 240
Query: 241 XXXXXXXXXXXXYSLGCCALRNNRRHKYSLVGK 273
YSLGCCALRNNRRHKYSLVGK
Sbjct: 241 VNAAFVALLLVVYSLGCCALRNNRRHKYSLVGK 273
>Os08g0443800 CD9/CD37/CD63 antigen family protein
Length = 277
Score = 243 bits (621), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 131/267 (49%), Positives = 159/267 (59%), Gaps = 6/267 (2%)
Query: 1 MAPRCSNAVFAAINXXXXXXXXXXXXXXIYYGAPHRGGGGVTECERFLRAPALALGGAIV 60
MA R SN V A+N I+ RG GG EC+R L +PA+ALG ++
Sbjct: 1 MAFRLSNNVIGALNLVTLLLSAPILSGGIWMAT--RGDGG--ECDRHLSSPAIALGAVLM 56
Query: 61 AVSLAGLAGACCRATPXXXXXXXXXXXXXXXXXCFGVFALVVTNAGAGRAVSGRGFREYH 120
AVSLAGL GACCR T F FA VTN GAG AVSGRG+REY
Sbjct: 57 AVSLAGLVGACCRVTWLLWVYLLAMFALIVALLGFTAFAFAVTNRGAGEAVSGRGYREYR 116
Query: 121 LGDYSTWLRRSVEDGGHWARIRSCLVDTGVCRSLKS-NQTLDEFVNSNLSPLQSGCCKPP 179
LGDYSTWLRR V +W +IRSCL VCRSL+ N+T +FV +LSP+QSGCCKPP
Sbjct: 117 LGDYSTWLRRHVGSSKNWDKIRSCLAGADVCRSLQDRNETWAQFVADDLSPVQSGCCKPP 176
Query: 180 TACNFTYQNETYWIKPPTPSNYSDPDCNSWSNDQSELCYGCQSCKAGVLGNLRSSWKKIX 239
T+CNFTY T W K S+ +DPDC+ WSND E+CYGC+SCKAGV+ L+ WK++
Sbjct: 177 TSCNFTYGGGTRWGKTARLSS-ADPDCDEWSNDADEVCYGCRSCKAGVVAALKRDWKRVA 235
Query: 240 XXXXXXXXXXXXXYSLGCCALRNNRRH 266
YS+GCCA +N+RR
Sbjct: 236 IVNVVFLAFIVVVYSVGCCAFKNSRRD 262
>Os09g0425900 Similar to Senescence-associated protein 5
Length = 276
Score = 241 bits (616), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 123/267 (46%), Positives = 156/267 (58%), Gaps = 7/267 (2%)
Query: 1 MAPRCSNAVFAAINXXXXXXXXXXXXXXIYYGAPHRGGGGVTECERFLRAPALALGGAIV 60
MA R SN++ +N I+ G TECER+ AP +A G ++
Sbjct: 1 MAFRLSNSLLGILNAVTFLLSVPVLGGGIWLATRADG----TECERYFSAPVIAFGVFLL 56
Query: 61 AVSLAGLAGACCRATPXXXXXXXXXXXXXXXXXCFGVFALVVTNAGAGRAVSGRGFREYH 120
VSLAGL GACCR CF VFA VVTN GAG AVSGRG++EY
Sbjct: 57 LVSLAGLVGACCRVNCLLWFYLVAMFVLIVVLFCFTVFAFVVTNKGAGEAVSGRGYKEYR 116
Query: 121 LGDYSTWLRRSVEDGGHWARIRSCLVDTGVCRSLKS-NQTLDEFVNSNLSPLQSGCCKPP 179
LGDYS WL++ +E+ +W RIRSCL D+ VC+ L+ N +F ++LSPL+SGCCKPP
Sbjct: 117 LGDYSNWLQKRMENSKNWNRIRSCLQDSKVCKKLQDKNWDRTQFFKADLSPLESGCCKPP 176
Query: 180 TACNFTYQNETYWIKPPTPSNYSDPDCNSWSNDQSELCYGCQSCKAGVLGNLRSSWKKIX 239
++CNF Y + T W K PT N SDPDCN+W +D ++LCY CQSCKAG + L+ WK++
Sbjct: 177 SSCNFLYVSGTNWTKVPT--NSSDPDCNTWVDDGTQLCYNCQSCKAGAVATLKRDWKRVA 234
Query: 240 XXXXXXXXXXXXXYSLGCCALRNNRRH 266
YSLGCCA RNNRR
Sbjct: 235 VVCIVFLVFIVIVYSLGCCAFRNNRRD 261
>Os10g0503600 CD9/CD37/CD63 antigen family protein
Length = 270
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 112/222 (50%), Gaps = 2/222 (0%)
Query: 43 ECERFLRAPALALGGAIVAVSLAGLAGACCRATPXXXXXXXXXXXXXXXXXCFGVFALVV 102
EC R L P + LGG I +SL G GA + F V A ++
Sbjct: 37 ECRRSLTIPVMGLGGVIFLISLVGFLGAWKKIACLLWTYLVMLFVVLVAIMVFTVLAFII 96
Query: 103 TNAGAGRAVSGRGFREYHLGDYSTWLRRSVEDGGHWARIRSCLVDTGVCRSL-KSNQTLD 161
TN G G +VSG ++EY L DYS+W + + D W +RSCLV + C L + +TL
Sbjct: 97 TNTGTGHSVSGVRYKEYRLQDYSSWFIKQLNDTEKWTHLRSCLVKSDDCNGLSRRYKTLK 156
Query: 162 EFVNSNLSPLQSGCCKPPTACNFTYQNETYWIKPPTPSNYSDPDCNSWSNDQSELCYGCQ 221
++ ++L+P++SGCC+PP C + N +Y+ P + ++ DC + N +S LCY C
Sbjct: 157 QYKLADLTPMESGCCRPPAECGYPAVNASYFDLSYHPVS-TNVDCKLYKNARSVLCYDCD 215
Query: 222 SCKAGVLGNLRSSWKKIXXXXXXXXXXXXXXYSLGCCALRNN 263
SCKAGV +++ W+ + Y + CCA RN
Sbjct: 216 SCKAGVAQYMKTEWRVVAIFNVILFVILSFVYFVACCARRNT 257
>AK073982
Length = 274
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 117/231 (50%), Gaps = 12/231 (5%)
Query: 42 TECERFLRAPALALGGAIVAVSLAGLAGACCRATPXXXXXXXXXXXXXXXXXCFGVFALV 101
+ C + L+ P + LG A++AV LAG A R C VF V
Sbjct: 35 SACVQLLQWPLIGLGVAVLAVGLAGFVAAFWRLPWLLLAYLVGMLLLVVALACLAVFVFV 94
Query: 102 VTNAGA--GRAVSGRGFREYHLGDYS-TWLRRSVED-GGHWARIRSCLVDTGVCRSLKSN 157
VT + G V R F EY L D+S +WLR V+D G W +I++CL T +C + N
Sbjct: 95 VTGGASSGGHTVPSRAFLEYELDDFSGSWLRGRVDDPAGRWEQIKTCLAATPICSDV--N 152
Query: 158 QTL----DEFVNSNLSPLQSGCCKPPTACNFTYQNETYWIKPPTPSNYSDPDCNSWSNDQ 213
QT D F S L+PLQSGCCKPPT C +T+ WI P + + +DPDC +WSND
Sbjct: 153 QTYATAQDFFSASWLTPLQSGCCKPPTRCGYTFVTPISWISPISAA--ADPDCGAWSNDP 210
Query: 214 SELCYGCQSCKAGVLGNLRSSWKKIXXXXXXXXXXXXXXYSLGCCALRNNR 264
S+LCY C SCKAG+L NL W++ Y+ C A R +
Sbjct: 211 SQLCYSCSSCKAGLLHNLSREWRRADLILLVATVALLAVYAFACYAFRTAK 261
>Os02g0728800
Length = 262
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 117/226 (51%), Gaps = 1/226 (0%)
Query: 42 TECERFLRAPALALGGAIVAVSLAGLAGA-CCRATPXXXXXXXXXXXXXXXXXCFGVFAL 100
+EC+R +R PA+ALG A + +SL +AG CCR F
Sbjct: 36 SECQRLVRVPAVALGSAALLLSLMAIAGVTCCRGAALLWAYASAMFLLIVGMFFVTAFVF 95
Query: 101 VVTNAGAGRAVSGRGFREYHLGDYSTWLRRSVEDGGHWARIRSCLVDTGVCRSLKSNQTL 160
VVTN G AVSG G+ +Y + DYS WLR +ED W RI SC+ D VC +
Sbjct: 96 VVTNRGVATAVSGTGYGDYRVRDYSEWLRARIEDYETWHRIESCMADAAVCGGPLAGINP 155
Query: 161 DEFVNSNLSPLQSGCCKPPTACNFTYQNETYWIKPPTPSNYSDPDCNSWSNDQSELCYGC 220
EF +L +QSGCCKPP C + NET+WI P + +D DC WSNDQ+ LC+ C
Sbjct: 156 GEFYRLHLPLIQSGCCKPPVYCGYERVNETFWIAPARGLDAADVDCLEWSNDQAVLCFRC 215
Query: 221 QSCKAGVLGNLRSSWKKIXXXXXXXXXXXXXXYSLGCCALRNNRRH 266
+CKA L +R +W+ + YSL CC++R+ R+
Sbjct: 216 NACKASALDTVRRNWRAVAVLNVAVLAILMLAYSLACCSVRDRSRY 261
>Os01g0977100 CD9/CD37/CD63 antigen family protein
Length = 298
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 110/225 (48%), Gaps = 10/225 (4%)
Query: 39 GGVTECERFLRAPALALGGAIVAVSLAGLAGACCRATPXXXXXXXXXXXXXXXXXCFGVF 98
GG + C L+AP LA+G + VSLAG GAC VF
Sbjct: 45 GGSSPCGSALQAPLLAIGFVTLLVSLAGFLGACYHVPSALWLYLAAMLLLVLALLGITVF 104
Query: 99 ALVVTNAGAGRAVSGRGFREYHLGDYSTWLRRSVEDGGHWARIRSCLVDTGVCRSLKSNQ 158
L VT G G V+GR +RE+ L DYS+WL+R V +W +C++ C +L +
Sbjct: 105 GLAVTAGGGGTQVAGRPYREFRLADYSSWLQRHVRAERYWRPALACVLAARACDTLAAWT 164
Query: 159 TLDEFVNSNLSPLQSGCCKPPTACNFTYQNETYWIKPPTPSNYSDPDCNSWSNDQSELCY 218
LD ++ ++L+P+QSGCCKPPTAC TY ++ PDC WSN LCY
Sbjct: 165 PLD-YLRNDLTPVQSGCCKPPTAC--TYYDDAQ-------QQQQQPDCYRWSNAPGVLCY 214
Query: 219 GCQSCKAGVLGNLRSSWKKIXXXXXXXXXXXXXXYSLGCCALRNN 263
GC SCKAGVL LR W + YS CCA RN
Sbjct: 215 GCDSCKAGVLEQLRRHWHNVTILNVVLLLLLILFYSCACCAFRNT 259
>Os06g0572400 CD9/CD37/CD63 antigen family protein
Length = 272
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 91/167 (54%), Gaps = 13/167 (7%)
Query: 113 GRGFREYHLGDYSTWLRRSVE-DGGHWARIRSCLVDTGVCRSLKSNQ----TLDEFVNSN 167
R + +Y L YSTWLR V D W IR+CL + CR L T ++F S+
Sbjct: 106 ARAYDDYRLDGYSTWLRDRVAGDPRRWEGIRACLAASDTCRKLAQESVFFITPEQFYQSH 165
Query: 168 LSPLQSGCCKPPTACNFTYQNETYWIKPPTPSNYSDPDCNSWSNDQSELCYGCQSCKAGV 227
L+PLQSGCCKPPT C + Y + T W+ P P+ +D DC +W ND S+LCY C SCKAG+
Sbjct: 166 LTPLQSGCCKPPTVCGYAYVSPTVWVNPANPA--ADADCAAWGNDPSQLCYECSSCKAGM 223
Query: 228 LGNLRSSWKKIXXXXXXXXXXXXXXYSLGCCALRNN------RRHKY 268
LG LR W++ Y +GC A +N RR+K+
Sbjct: 224 LGTLREQWRRANVALVIATVALIFFYVIGCSAFKNAQTEDLFRRYKW 270
>Os02g0219700 CD9/CD37/CD63 antigen family protein
Length = 270
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
Query: 97 VFALVVTNAGAGRAVSGRGFREYHLGDYSTWLRRSV-EDGGHWARIRSCLVDTGVCRSLK 155
VFA VT V GR + EYHL +S WLR V +D W RI++CLV + C+ L
Sbjct: 90 VFAFAVTRGSGAYPVLGRAYDEYHLDGFSMWLRGYVSDDPARWERIKACLVVSDTCKKLA 149
Query: 156 SNQ---TLDEFVNSNLSPLQSGCCKPPTACNFTYQNETYWIKPPTPSNYSDPDCNSWSND 212
T D+F S LSPLQSGCCKPP C + Y + T W P +D DC +W ND
Sbjct: 150 RQAGFLTADQFYQSRLSPLQSGCCKPPAVCGYNYVSPTVWAGPAARPA-ADADCGAWGND 208
Query: 213 QSELCYGCQSCKAGVLGNLRSSWKKIXXXXXXXXXXXXXXYSLGCCALRNN------RRH 266
S+LCY C+SC+AG+L LR+ W + Y +GC A +N RR+
Sbjct: 209 PSQLCYECESCRAGLLAALRAQWHRANVALVVATVALVFLYLVGCSAYKNAQAEALFRRY 268
Query: 267 KY 268
K+
Sbjct: 269 KW 270
>Os06g0653100 CD9/CD37/CD63 antigen family protein
Length = 117
Score = 124 bits (310), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 68/100 (68%)
Query: 166 SNLSPLQSGCCKPPTACNFTYQNETYWIKPPTPSNYSDPDCNSWSNDQSELCYGCQSCKA 225
++L +QSGCCKPPT CNF Y +ET W KP ++ DPDC +WSNDQ+ LCY CQSCKA
Sbjct: 10 THLHHIQSGCCKPPTGCNFAYVSETVWTKPSGFNSTDDPDCTTWSNDQTALCYDCQSCKA 69
Query: 226 GVLGNLRSSWKKIXXXXXXXXXXXXXXYSLGCCALRNNRR 265
GVL NL++ WKKI YS+GCCA RNNRR
Sbjct: 70 GVLANLKNDWKKIATVNIIFLIFLIIVYSVGCCAFRNNRR 109
>Os03g0853200 CD9/CD37/CD63 antigen family protein
Length = 285
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 102/207 (49%), Gaps = 16/207 (7%)
Query: 42 TECER-FLRAPALALGGAIVAVSLAGLAGACCRATPXXXXXXXXXXXXXXXXXCFGVFAL 100
T C R P +A+G + V + GL GA F +F
Sbjct: 52 THCTRGVFLWPCIAIGLFFMVVFILGLCGAKNNNEGLFFCHLLGVFIAILALIGFIIFGY 111
Query: 101 VVTNAGAGRAVSGRGFREYHLGDY-STWLRRSVEDGGHWARIRSCLV-DTGV-CRSLKS- 156
V G G +S REY+L DY S WLR V+D +WA +CL D G C+++
Sbjct: 112 VAI--GPGIDLSDVKAREYNLDDYKSGWLRARVDDAAYWATTSACLRGDRGAGCKAMTKL 169
Query: 157 --NQTLDEFV------NSNLSPLQSGCCKPPTACNFTYQNETYWIKPPTPSNYSDPDCNS 208
+ FV + ++SP+QSGCCKPP++C FTY N T W P + ++ DC+
Sbjct: 170 VRDPHSGLFVPDGGRRHVDMSPIQSGCCKPPSSCGFTYVNGTTWTPTPAAAT-NNVDCSR 228
Query: 209 WSNDQSELCYGCQSCKAGVLGNLRSSW 235
WSNDQ +LC+ C SCKAG L + R +W
Sbjct: 229 WSNDQQKLCFQCDSCKAGFLDHTRKAW 255
>Os05g0122800 CD9/CD37/CD63 antigen family protein
Length = 119
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 171 LQSGCCKPPTACNFTYQNETYWIKPP-TPSNYSDPDCNSWSNDQSELCYGCQSCKAGVLG 229
LQSGCCKPPT+C + Y NET+W P P+ +D DC+ WSNDQ LC+ C SCKAGVL
Sbjct: 2 LQSGCCKPPTSCAYNYVNETFWTANPGVPTVVNDVDCSKWSNDQQTLCFQCDSCKAGVLA 61
Query: 230 NLRSSWKKIXXXXXXXXXXXXXXYSLGCCALRNNRR 265
++ SW+K+ Y GC A RN RR
Sbjct: 62 GIKKSWRKVAILNIVVLIILVIVYVAGCAAFRNARR 97
>Os12g0249100
Length = 310
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 28/166 (16%)
Query: 95 FGVFALVVTNAGAGRAVSGRGFREYHLGDYSTWLRRSVEDGGHWARIRSCLVDTGVC--- 151
F +F V A G + G REY+L +YS WLR V D +W +CL D VC
Sbjct: 106 FIIFGYV---AVGGIDLGGVSIREYNLEEYSGWLRGRVADPHYWETTSACLRDGNVCSGM 162
Query: 152 -RSLKSNQT---------LDEFVNSN--------LSPLQSGCCKPPTACNFTYQNETYWI 193
R ++ T + ++ + +SP++SGCCKPPT+C F Y N T WI
Sbjct: 163 TRLVRDPDTGIFVPELSRYERWLKEHGIKKGVHVMSPIESGCCKPPTSCGFRYVNGTTWI 222
Query: 194 KPPTPSNYS----DPDCNSWSNDQSELCYGCQSCKAGVLGNLRSSW 235
P + + DC+ WSN+Q LC+ C SCKAG L +++ +W
Sbjct: 223 PTPAAAGTPAAATNVDCSRWSNNQQTLCFQCDSCKAGFLDDIKKAW 268
>Os05g0126100 CD9/CD37/CD63 antigen family protein
Length = 288
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Query: 39 GGVTECERFLRAPALALGGAIVAVSLAGLAGACCRATPXXXXXXXXXXXXXXXXXCFGVF 98
G C L+ P L +G ++ VSLAG GAC F
Sbjct: 35 GSTATCSSMLQTPLLVIGFVVLLVSLAGFVGACFHVAWALWLYLLAMMLLIAFLLGLTAF 94
Query: 99 ALVVTNAGAGRAVSGRGFREYHLGDYSTWLRRSVEDGGHWARIRSCLVDTGVCRSLKSNQ 158
VT G G V GR +REYH DYS+WL++ ++D +W +C+V + C + +
Sbjct: 95 GFAVTAGGGGTQVPGRPYREYHTSDYSSWLQKHIQDAKYWRPALACVVGSKACPKIANWS 154
Query: 159 TLDEFVNSNLSPLQSGCC 176
+D ++ +L+P+Q C
Sbjct: 155 PMD-YLQHDLTPIQMINC 171
>Os03g0853000
Length = 297
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 67/153 (43%), Gaps = 34/153 (22%)
Query: 117 REYHLGD-YSTWLRRSVEDGGH-WARIRSCLVDTGVCR---SLKSNQTLDEFVNSN---- 167
REY L + WLR V H WA +CL + VC +L N FV
Sbjct: 109 REYSLSECKRGWLRGRVTHSSHFWASTSACLRRSHVCNGMTNLVRNPDTGIFVPRPSSFE 168
Query: 168 --------------LSPLQSGCCKPPTACNFTYQNETYWIKP-----------PTPSNYS 202
+SP++SGCCKPP++C TY N T WI +N
Sbjct: 169 RWAKRHGVDADPRVMSPIESGCCKPPSSCGLTYVNGTTWISTAASAGAPAAVAQVTNNNK 228
Query: 203 DPDCNSWSNDQSELCYGCQSCKAGVLGNLRSSW 235
D DC+ WSND LC+ C SCKAG L + +W
Sbjct: 229 DDDCSRWSNDHQTLCFQCDSCKAGFLRHTSQAW 261
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,867,788
Number of extensions: 421555
Number of successful extensions: 958
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 15
Length of query: 273
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 174
Effective length of database: 11,866,615
Effective search space: 2064791010
Effective search space used: 2064791010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)