FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0977100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CD9/CD37/CD63 antigen family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0326) R2 : 0.0203
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.211 (0.0685) R2dN8 : 0.0262 R2N8 : 0.0203
σ : 0.613
deviance : 172.48
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
147.92 0.571 3.21 -0.967 0.0143 0.966 -0.877 -3.16 0.235 15.2 29.98 1261 -- --
149.75 0.57 3.13 -0.318 0.015 0.608 -0.831 -- 0.322 15.5 30.37 1230 -- --
150.35 0.571 3.21 -0.931 0.0198 0.95 -- -2.86 0.237 11.3 29.94 1264 -- --
151.21 0.573 3.15 -0.357 0.0191 0.644 -- -- 0.238 11.4 29.76 1244 -- --
150.38 0.571 3.21 -0.93 -- 0.947 -- -2.85 0.236 -- 29.92 1264 -- --
168.31 0.608 3.15 -0.132 0.0777 -- 0.976 -- 0.198 2.98 -- -- -- --
171.44 0.613 3.16 -0.154 0.0856 -- -- -- 0.192 1.36 -- -- -- --
151.21 0.573 3.15 -0.354 -- 0.635 -- -- 0.241 -- 29.74 1256 -- --
154.29 0.579 3.14 -- 0.014 0.588 -- -- 0.247 10.9 29.6 1244 -- --
171.89 0.613 3.16 -0.15 -- -- -- -- 0.194 -- -- -- -- --
172.06 0.614 3.15 -- 0.0829 -- -- -- 0.209 1.29 -- -- -- --
154.3 0.579 3.14 -- -- 0.584 -- -- 0.248 -- 29.62 1248 -- --
172.48 0.613 3.15 -- -- -- -- -- 0.211 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 146.45 radiation 1 1440 > th dose dependent rect. 18 1
11 146.46 radiation 20 1440 < th dose independent rect. 16 1
12 146.47 radiation 20 1440 < th dose independent rect. 16 15
13 146.60 radiation 20 1440 < th dose independent rect. 16 4
16 146.62 radiation 20 1440 < th dose independent rect. 16 11
18 146.65 radiation 20 1440 < th dose independent rect. 16 7
22 146.72 radiation 20 1440 < th dose independent rect. 16 9
27 147.17 radiation 20 1440 > th dose independent rect. 16 1
42 147.57 radiation 10 1440 < th dose dependent rect. 18 1
43 147.58 wind 9 43200 > th dose independent rect. 19 12
44 147.59 wind 9 43200 > th dose dependent rect. 19 12
45 147.60 wind 9 43200 < th dose independent rect. 19 12
58 147.90 radiation 10 1440 < th dose dependent rect. 18 9
60 147.93 wind 9 43200 > th dose independent sin 11 NA
61 147.94 wind 5 43200 > th dose dependent rect. 20 20
71 148.03 wind 9 43200 < th dose independent sin 11 NA
81 148.19 wind 9 43200 > th dose dependent sin 13 NA
83 148.21 wind 9 43200 > th dose independent rect. 19 8
85 148.21 temperature 30 1440 < th dose independent rect. 15 21
86 148.21 wind 5 43200 > th dose dependent rect. 22 18
88 148.22 wind 9 43200 < th dose independent rect. 19 5
97 148.31 wind 9 43200 < th dose independent rect. 19 7
100 148.32 wind 9 43200 > th dose independent rect. 17 15
103 148.34 wind 9 43200 > th dose independent rect. 19 5
107 148.38 temperature 30 1440 > th dose independent rect. 11 1
121 148.46 temperature 30 1440 > th dose independent rect. 15 21
128 148.50 radiation 30 1440 < th dose independent rect. 15 17
129 148.50 wind 7 43200 > th dose dependent sin 11 NA
130 148.50 radiation 10 1440 < th dose dependent rect. 18 7
137 148.54 wind 5 43200 > th dose dependent sin 3 NA
140 148.55 wind 9 43200 > th dose dependent rect. 14 18
141 148.56 temperature 30 1440 < th dose independent rect. 10 2
144 148.58 radiation 30 14400 > th dose independent rect. 16 16
157 148.61 wind 9 43200 < th dose independent rect. 17 18
158 148.61 wind 5 43200 > th dose independent rect. 20 21
166 148.64 wind 7 43200 < th dose independent rect. 20 20
173 148.66 wind 5 43200 > th dose independent rect. 23 17
175 148.67 wind 5 43200 < th dose independent rect. 23 17
176 148.67 wind 5 43200 > th dose independent rect. 22 19
177 148.67 wind 7 43200 > th dose independent rect. 18 20
179 148.67 wind 5 43200 > th dose independent rect. 18 22
182 148.68 temperature 30 1440 < th dose independent rect. 18 18
221 148.76 radiation 20 1440 > th dose dependent rect. 16 1
226 148.76 temperature 25 720 > th dose dependent rect. 17 6
253 148.80 wind 5 43200 > th dose dependent rect. 6 9
279 148.87 wind 9 43200 < th dose independent rect. 14 21
320 149.00 temperature 30 1440 > th dose independent rect. 18 18
325 149.01 wind 5 43200 > th dose dependent no NA NA
326 149.01 temperature 25 720 > th dose dependent rect. 17 16
344 149.05 wind 5 43200 > th dose dependent rect. 6 23
345 149.06 radiation 1 1440 > th dose independent rect. 18 11
351 149.07 wind 9 43200 > th dose independent rect. 14 21
361 149.08 wind 5 43200 > th dose dependent rect. 4 23
362 149.08 wind 5 43200 > th dose dependent rect. 23 23
367 149.09 wind 5 43200 > th dose dependent rect. 2 23
375 149.12 wind 5 43200 > th dose independent sin 3 NA
384 149.13 atmosphere 1000 43200 < th dose dependent rect. 11 1
390 149.14 wind 5 43200 < th dose independent sin 3 NA
398 149.15 radiation 1 1440 > th dose independent rect. 18 1
425 149.17 radiation 1 1440 < th dose independent rect. 18 1
439 149.19 temperature 30 1440 < th dose independent sin 11 NA
462 149.22 radiation 1 1440 < th dose independent rect. 18 9
463 149.22 wind 5 43200 > th dose independent rect. 15 23
470 149.23 wind 7 43200 > th dose independent sin 5 NA
479 149.24 wind 7 43200 < th dose independent sin 5 NA
489 149.25 wind 5 43200 > th dose dependent rect. 10 23
499 149.27 wind 9 43200 > th dose independent rect. 14 19
524 149.30 wind 9 43200 < th dose independent rect. 14 19
541 149.31 wind 5 43200 > th dose dependent rect. 6 1
549 149.32 temperature 30 1440 < th dose independent rect. 15 8
550 149.32 temperature 30 1440 < th dose independent rect. 15 10
556 149.33 temperature 30 1440 < th dose independent rect. 15 4
558 149.33 radiation 1 1440 < th dose independent rect. 18 5
559 149.33 radiation 1 1440 < th dose independent rect. 18 7
572 149.34 temperature 30 1440 < th dose independent rect. 15 13
573 149.34 temperature 30 1440 < th dose independent rect. 15 15
587 149.35 wind 9 43200 > th dose dependent sin 17 NA
592 149.36 temperature 30 1440 < th dose independent rect. 15 17
600 149.37 temperature 30 1440 > th dose independent rect. 15 4
602 149.37 temperature 30 1440 < th dose independent rect. 7 5
623 149.38 humidity 70 1440 < th dose independent rect. 18 2
653 149.40 temperature 30 1440 < th dose independent rect. 2 10
654 149.40 temperature 30 1440 < th dose independent rect. 22 14
664 149.41 temperature 30 1440 > th dose independent sin 11 NA
665 149.41 temperature 30 1440 < th dose independent rect. 5 7
668 149.41 temperature 30 1440 < th dose independent rect. 24 12
726 149.47 wind 5 43200 > th dose independent no NA NA
776 149.52 wind 5 43200 > th dose independent rect. 24 23
781 149.53 wind 9 43200 < th dose independent rect. 12 23
788 149.54 radiation 30 14400 > th dose independent rect. 7 1
863 149.61 wind 5 43200 > th dose independent rect. 2 23
874 149.62 wind 5 43200 > th dose independent rect. 4 23
875 149.62 wind 5 43200 > th dose independent rect. 6 23
891 149.64 temperature 30 1440 > th dose independent rect. 9 10
958 149.68 wind 5 43200 > th dose independent rect. 10 23
960 149.69 wind 5 43200 < th dose independent no NA NA