Os09g0425900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Senescence-associated protein 5.
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Os09g0425900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Senescence-associated protein 5.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.11 | 0.47 | 12.9 | 1.45 | 1.94 | 1.12 | 1.48 | 0.743 | 0.866 | 18.2 | 29.47 | 1307 | -- | -- |
| 100.5 | 0.467 | 12.9 | 1.6 | 1.93 | 1.15 | 1.4 | -- | 0.869 | 18.2 | 29.5 | 1307 | -- | -- |
| 105.44 | 0.478 | 12.9 | 1.41 | 1.94 | 1.11 | -- | 0.844 | 0.867 | 18.1 | 29.46 | 1308 | -- | -- |
| 105.59 | 0.479 | 12.9 | 1.64 | 1.94 | 1.22 | -- | -- | 0.937 | 18.1 | 29.3 | 1309 | -- | -- |
| 300.1 | 0.807 | 12.9 | 1.04 | -- | 1.08 | -- | 2.21 | 0.754 | -- | 29.5 | 1312 | -- | -- |
| 171.66 | 0.614 | 12.9 | 1.25 | 2.02 | -- | 1.61 | -- | 0.839 | 17.8 | -- | -- | -- | -- |
| 177.99 | 0.625 | 12.9 | 1.24 | 2.03 | -- | -- | -- | 0.845 | 17.8 | -- | -- | -- | -- |
| 301.3 | 0.808 | 12.9 | 1.58 | -- | 1.31 | -- | -- | 0.889 | -- | 29.3 | 1310 | -- | -- |
| 173.07 | 0.613 | 12.9 | -- | 2 | 0.96 | -- | -- | 0.849 | 18.1 | 29 | 1294 | -- | -- |
| 390.76 | 0.924 | 12.9 | 1.17 | -- | -- | -- | -- | 0.798 | -- | -- | -- | -- | -- |
| 218.37 | 0.691 | 12.9 | -- | 2.01 | -- | -- | -- | 0.708 | 17.8 | -- | -- | -- | -- |
| 366.3 | 0.891 | 12.9 | -- | -- | 1.06 | -- | -- | 0.718 | -- | 29.36 | 1306 | -- | -- |
| 427.18 | 0.965 | 12.9 | -- | -- | -- | -- | -- | 0.668 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.73 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 10 | 104.34 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 11 | 104.35 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 13 | 104.35 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 20 | 104.37 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 26 | 104.44 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 11 |
| 28 | 104.45 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 17 |
| 50 | 104.52 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 17 | NA |
| 63 | 104.53 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 64 | 104.54 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 65 | 104.54 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 16 |
| 72 | 104.55 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 95 | 104.58 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 19 |
| 103 | 104.59 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 126 | 104.67 | temperature | 30.0 | 1440 | < th | dose independent | sin | 18 | NA |
| 130 | 104.67 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 135 | 104.69 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 144 | 104.73 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 147 | 104.74 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 170 | 104.76 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 195 | 104.80 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 234 | 104.89 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 249 | 104.95 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 273 | 104.99 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 303 | 105.06 | temperature | 30.0 | 1440 | > th | dose independent | sin | 17 | NA |
| 359 | 105.26 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 22 |
| 362 | 105.27 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 365 | 105.27 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 393 | 105.28 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 436 | 105.30 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 452 | 105.30 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 23 |
| 454 | 105.30 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 521 | 105.38 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 547 | 105.49 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 552 | 105.51 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 553 | 105.51 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 579 | 105.54 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 12 |
| 621 | 105.81 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 629 | 105.84 | temperature | 30.0 | 1440 | > th | dose independent | no | NA | NA |
| 767 | 105.98 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 909 | 106.66 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 981 | 107.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |