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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0443800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CD9/CD37/CD63 antigen family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.71 (0.0335) R2 : 0.691
β1 : -0.883 (0.123) R2dD : 0.0367 R2D : 0.0684
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.44 (0.151) R2dE : 0.613 R2E : 0.655
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0923 (0.0724) R2dN8 : 0.00152 R2N8 : 0.00713
σ : 0.624
deviance : 179.3
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.75
memory length : 275
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.02
open length of G : 6.97

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
162.25 0.598 3.71 -0.742 0.00354 4.22 -1.69 -1.48 -0.0832 7.13 31.04 278 5 7.1
163.97 0.596 3.73 -0.925 0.0537 4.19 2.21 -- -0.104 19.8 30.86 304 4.8 6.98
166.35 0.601 3.68 -0.67 0.176 3.97 -- -2.36 -0.032 13.5 30.03 293 4.72 6.74
178.87 0.623 3.71 -0.887 0.14 4.26 -- -- -0.0899 13.2 30.19 283 4.92 6.83
166.58 0.601 3.7 -0.701 -- 3.97 -- -2.6 -0.0718 -- 31.14 292 4.77 6.91
300.13 0.812 3.75 -1.29 1.75 -- -2.53 -- -0.467 10.6 -- -- -- --
326.04 0.846 3.76 -1.39 1.76 -- -- -- -0.472 10.8 -- -- -- --
179.3 0.624 3.71 -0.883 -- 4.44 -- -- -0.0923 -- 30.75 275 5.02 6.97
198.38 0.656 3.69 -- 0.118 4.65 -- -- 0.0345 14.1 29.92 277 5.03 6.9
518.58 1.06 3.8 -1.42 -- -- -- -- -0.483 -- -- -- -- --
376.91 0.908 3.72 -- 1.78 -- -- -- -0.318 10.8 -- -- -- --
198.73 0.657 3.69 -- -- 4.76 -- -- 0.0392 -- 30.14 279 5.02 7
572.14 1.12 3.77 -- -- -- -- -- -0.325 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.71 temperature 30 270 < th dose dependent rect. 5 7
36 181.10 temperature 15 270 > th dose dependent rect. 1 15
73 189.02 temperature 25 270 < th dose dependent sin 3 NA
90 191.77 temperature 25 90 < th dose independent rect. 7 6
91 191.77 temperature 30 720 < th dose dependent rect. 22 13
96 192.13 temperature 30 270 < th dose dependent rect. 9 1
165 196.94 temperature 30 720 < th dose dependent sin 8 NA
167 197.07 temperature 15 720 > th dose dependent rect. 23 7
171 197.24 temperature 25 10 < th dose independent rect. 6 7
195 198.40 temperature 20 270 > th dose independent rect. 1 15
238 199.90 temperature 15 270 > th dose dependent sin 4 NA
306 202.34 temperature 10 720 > th dose dependent sin 9 NA
388 204.95 temperature 10 720 > th dose dependent rect. 19 16
414 205.87 temperature 15 720 > th dose dependent rect. 19 14
463 206.96 temperature 25 720 < th dose dependent rect. 1 2
652 211.59 atmosphere 1010 270 < th dose independent rect. 1 15
698 212.43 atmosphere 1000 10 > th dose dependent rect. 7 6
738 213.24 atmosphere 1010 270 < th dose independent rect. 9 9
765 213.85 temperature 20 720 < th dose independent rect. 22 13
772 214.11 atmosphere 995 270 > th dose dependent rect. 5 7
849 215.20 temperature 20 720 > th dose independent rect. 2 4
890 215.81 temperature 20 720 > th dose independent rect. 24 6
962 216.72 temperature 20 720 < th dose independent rect. 23 7
981 216.93 temperature 20 720 < th dose independent sin 7 NA
987 216.98 temperature 20 720 < th dose independent rect. 24 5
993 217.03 temperature 20 720 > th dose independent sin 7 NA