FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0853200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CD9/CD37/CD63 antigen family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.73 (0.0457) R2 : 0.231
β1 : -0.355 (0.168) R2dD : 0.0085 R2D : 0.00956
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.83 (0.185) R2dE : 0.161 R2E : 0.148
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.31 (0.686) R2dD*E : 0.0713 R2D*E : 0.0576
γ1 : -0.132 (0.0976) R2dN8 : 0.00461 R2N8 : 0.000702
σ : 0.855
deviance : 337.04
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 97.61
memory length : 210
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 0.175
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
327.29 0.85 3.72 -0.397 0.51 2.04 0.477 -4.74 -0.109 4.95 91.35 224 23.8 --
347.53 0.868 3.74 -0.368 0.686 2.39 1.95 -- -0.116 1.93 100.2 147 22.1 --
327.66 0.843 3.72 -0.398 0.556 2.07 -- -4.84 -0.105 4.77 90.86 220 23.5 --
360.56 0.884 3.74 -0.441 0.707 2.35 -- -- -0.139 0.931 105.4 147 22.1 --
337.04 0.855 3.73 -0.355 -- 1.83 -- -4.31 -0.132 -- 97.61 210 0.175 --
388.92 0.925 3.71 -0.382 0.75 -- -1.47 -- -0.126 10.2 -- -- -- --
397.05 0.933 3.71 -0.444 0.771 -- -- -- -0.132 9.73 -- -- -- --
365.2 0.89 3.74 -0.408 -- 1.71 -- -- -0.142 -- 101.9 153 23.8 --
365.64 0.891 3.74 -- 0.698 2.39 -- -- -0.0913 0.416 106.6 147 22.3 --
432.45 0.972 3.73 -0.452 -- -- -- -- -0.131 -- -- -- -- --
402.26 0.938 3.7 -- 0.773 -- -- -- -0.0825 9.77 -- -- -- --
369.58 0.895 3.73 -- -- 1.73 -- -- -0.0994 -- 101.5 153 23.9 --
437.83 0.977 3.72 -- -- -- -- -- -0.081 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 321.67 humidity 90 90 < th dose dependent rect. 8 6
15 324.66 humidity 90 270 < th dose dependent rect. 23 14
17 324.73 humidity 80 270 < th dose independent rect. 7 5
77 329.43 humidity 90 90 < th dose dependent rect. 19 19
88 329.72 humidity 90 270 < th dose dependent sin 6 NA
163 333.09 humidity 60 270 > th dose dependent sin 6 NA
269 335.28 humidity 80 270 < th dose independent sin 6 NA
275 335.41 atmosphere 1015 270 < th dose independent rect. 11 22
280 335.46 temperature 15 90 > th dose dependent rect. 9 5
294 335.66 radiation 10 270 > th dose independent rect. 17 20
308 335.83 radiation 10 270 > th dose independent rect. 6 7
321 335.90 humidity 60 90 > th dose dependent sin 3 NA
328 336.03 radiation 10 270 > th dose independent rect. 8 4
423 337.54 humidity 70 270 > th dose dependent rect. 2 12
445 337.78 humidity 80 270 > th dose independent sin 6 NA
456 337.94 temperature 20 270 > th dose independent rect. 9 3
471 338.33 humidity 80 270 > th dose independent rect. 2 12
509 339.11 atmosphere 1015 270 < th dose independent rect. 13 19
519 339.37 temperature 20 90 > th dose independent rect. 9 5
682 340.90 temperature 20 30 > th dose dependent rect. 1 13
684 340.91 radiation 10 270 > th dose independent sin 6 NA
715 341.24 radiation 20 10 > th dose independent rect. 8 6
898 343.09 temperature 20 10 > th dose independent rect. 10 4