BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0239100 Os08g0239100|Os08g0239100
(208 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0239100 Conserved hypothetical protein 395 e-110
Os11g0275200 Similar to Endo-1,3 246 9e-66
Os08g0239300 Dienelactone hydrolase domain containing protein 243 6e-65
Os08g0238200 Dienelactone hydrolase domain containing protein 232 1e-61
Os11g0275500 Similar to Endo-1,3 222 1e-58
Os08g0238500 Similar to Endo-1,3 221 3e-58
Os11g0275000 Similar to Endo-1,3 220 7e-58
Os05g0400200 165 3e-41
Os05g0400100 Dienelactone hydrolase domain containing protein 164 5e-41
Os05g0399100 Similar to Endo-1,3 162 1e-40
Os05g0399200 Similar to Endo-1,3 157 5e-39
Os08g0238600 Similar to Endo-1,3 132 1e-31
Os08g0283600 67 7e-12
>Os08g0239100 Conserved hypothetical protein
Length = 208
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 20 PTHSQCLDNPPDLTAGGGEAGVVVHDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLLRK 79
PTHSQCLDNPPDLTAGGGEAGVVVHDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLLRK
Sbjct: 20 PTHSQCLDNPPDLTAGGGEAGVVVHDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLLRK 79
Query: 80 IADKVGQAGYYVAVPDFFHGDPYTLDLNLTEWFSKHSPMKILSSCTYQDAQIKPQIKQNY 139
IADKVGQAGYYVAVPDFFHGDPYTLDLNLTEWFSKHSPMKILSSCTYQDAQIKPQIKQNY
Sbjct: 80 IADKVGQAGYYVAVPDFFHGDPYTLDLNLTEWFSKHSPMKILSSCTYQDAQIKPQIKQNY 139
Query: 140 IQRKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLTPPKLVYQYVQA 199
IQRKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLTPPKLVYQYVQA
Sbjct: 140 IQRKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLTPPKLVYQYVQA 199
Query: 200 LRHRTDRIR 208
LRHRTDRIR
Sbjct: 200 LRHRTDRIR 208
>Os11g0275200 Similar to Endo-1,3
Length = 266
Score = 246 bits (628), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 122/192 (63%), Positives = 143/192 (74%), Gaps = 6/192 (3%)
Query: 20 PTHSQCLDNPPDLTAGGGEAGVVVHDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLLRK 79
P QC ++PPD+ AGGGEAGVVVHDLAG+EAYVTGA HS +A++LASDV+GF+APLLR+
Sbjct: 29 PPRLQCFEHPPDMKAGGGEAGVVVHDLAGYEAYVTGAAHSGRAIVLASDVYGFQAPLLRQ 88
Query: 80 IADKVGQAGYYVAVPDFFHGDPYTLDLNLTEWFSKHSPMKILSSCTYQDAQIKPQIKQ-- 137
IADKVG AGYYV VPD FHGDP T +N TEW HSP+K A ++ + K
Sbjct: 89 IADKVGDAGYYVVVPDLFHGDPATTTVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSLV 148
Query: 138 ---NYIQ-RKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLTPPKLV 193
Y KFAVEVAKTNEVEA+V +HP VT DD+KEVK PIEI+G QNDT+TPP+LV
Sbjct: 149 GVGGYCWGGKFAVEVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLV 208
Query: 194 YQYVQALRHRTD 205
YQYV ALR R D
Sbjct: 209 YQYVHALRQRND 220
>Os08g0239300 Dienelactone hydrolase domain containing protein
Length = 263
Score = 243 bits (621), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 131/196 (66%), Positives = 145/196 (73%), Gaps = 8/196 (4%)
Query: 20 PTHSQCLDNPPDLTAGGGEAG--VVVHDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLL 77
P HSQCLDNPPDLT GG VVVHDL GFEAYVTGAVHS + +LLA+D+FGFEAPLL
Sbjct: 23 PPHSQCLDNPPDLTTAGGGGEAGVVVHDLGGFEAYVTGAVHSRRTILLATDIFGFEAPLL 82
Query: 78 RKIADKVGQAGYYVAVPDFFHGDPYTLDLNLTEWFSKHSPMKILSSCTYQDAQIKPQIKQ 137
RKIADKVG AGYYV VPD FHG PYT D N TEW S HSP+K A + + K
Sbjct: 83 RKIADKVGLAGYYVVVPDLFHGQPYTFDQNRTEWLSAHSPVKAAEDAKPIFAALSKEGKS 142
Query: 138 -----NYIQ-RKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLTPPK 191
Y KFAVEVAKTNEVEAIV +HP VT DD+KEVK PIEI+GAQNDT+TPP+
Sbjct: 143 IVGVGGYCWGGKFAVEVAKTNEVEAIVISHPAAVTADDMKEVKWPIEILGAQNDTVTPPR 202
Query: 192 LVYQYVQALRHRTDRI 207
LVYQ+V ALR RTD+I
Sbjct: 203 LVYQFVHALRQRTDQI 218
>Os08g0238200 Dienelactone hydrolase domain containing protein
Length = 276
Score = 232 bits (592), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 119/191 (62%), Positives = 141/191 (73%), Gaps = 9/191 (4%)
Query: 24 QCLDNPPDLTAGG-GEAGVVVHDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLLRKIAD 82
QCL+NPP+LTA G GEAGVVV +L GF AYVTGA HS +A++LASDVFGFEAPLLRKIAD
Sbjct: 40 QCLENPPELTAAGDGEAGVVVQNLGGFAAYVTGAAHSGRAIVLASDVFGFEAPLLRKIAD 99
Query: 83 KVGQAGYYVAVPDFFHGDPYTLD--LNLTEWFSKHSPMKILSSCTYQDAQIKPQIKQ--- 137
KVG+AGYYV VPDFF G PY D +N+T+W HSP+K A +K + K
Sbjct: 100 KVGEAGYYVVVPDFFQGRPYNGDPSINITQWIMAHSPVKAAEDSKPIFAALKREGKSVVG 159
Query: 138 --NYIQ-RKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLTPPKLVY 194
Y K AVEVAKTNEV AIV +HP VT DD+K+VKCPIEI+GA+ND +TPP+LVY
Sbjct: 160 VGGYCWGGKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPRLVY 219
Query: 195 QYVQALRHRTD 205
Q+V ALR R +
Sbjct: 220 QFVNALRQRPE 230
>Os11g0275500 Similar to Endo-1,3
Length = 276
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/194 (60%), Positives = 141/194 (72%), Gaps = 14/194 (7%)
Query: 24 QCLDNPPDLTAGG-GEAGVVVHDLAGFEAYVTG-AVHSTKAVLLASDVFGFEAPLLRKIA 81
QCL+NPP+LTA G GEAGVVV +L GF AYVTG A HS +A++LASDVFGFEAPLLRKIA
Sbjct: 39 QCLENPPELTAAGDGEAGVVVQNLGGFAAYVTGGAAHSGRAIVLASDVFGFEAPLLRKIA 98
Query: 82 DKVGQAGYYVAVPDFFHGDPYTLD--LNLTEWFSKHSPMKILSSCTYQDAQIKPQIKQNY 139
DKVG+AGYYV VPDFF PY D +N+T+W HSP+K A +K + K Y
Sbjct: 99 DKVGEAGYYVVVPDFFQRRPYNGDPSINITKWIMAHSPVKAAEDSKPIFAALKREGK--Y 156
Query: 140 I--------QRKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLTPPK 191
+ K AVEVAKTNEV AIV +HP VT DD+K+VKCPIEI+GA+ND +TPP+
Sbjct: 157 VVGVGGYCWGGKLAVEVAKTNEVGAIVISHPSSVTADDMKDVKCPIEILGAENDAVTPPR 216
Query: 192 LVYQYVQALRHRTD 205
LVYQ+V ALR R +
Sbjct: 217 LVYQFVNALRQRPE 230
>Os08g0238500 Similar to Endo-1,3
Length = 279
Score = 221 bits (564), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/198 (58%), Positives = 138/198 (69%), Gaps = 17/198 (8%)
Query: 25 CLDNPPDLTAGG-GEAGVVVHDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLLRKIADK 83
CLDNPP+LTA G GEAGVV+ DLAGF AYVTG VHS +A++LASD++GFEAPLLR ADK
Sbjct: 36 CLDNPPELTADGDGEAGVVIDDLAGFPAYVTGDVHSGRAIILASDIYGFEAPLLRDNADK 95
Query: 84 VGQAGYYVAVPDFFHGDPYTLD--LNLTEWFSKHSPMKILSSCTYQDAQIKPQIK----- 136
VG+AGYYV VPDFFHG PY D +N+T+W + HSP+K A +K + K
Sbjct: 96 VGEAGYYVVVPDFFHGQPYNGDPSINVTKWITLHSPVKAAEDAKSIFAALKREGKSVIGI 155
Query: 137 ---------QNYIQRKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTL 187
Q + KFAVEVAKTNEVEAIV +HP V DD+K VKCPIEI+G QND +
Sbjct: 156 GGYCWGVSAQVQLAAKFAVEVAKTNEVEAIVISHPSEVIADDMKGVKCPIEILGGQNDPI 215
Query: 188 TPPKLVYQYVQALRHRTD 205
TPP LV Q+V LR T+
Sbjct: 216 TPPSLVDQFVNVLRQTTE 233
>Os11g0275000 Similar to Endo-1,3
Length = 372
Score = 220 bits (560), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 115/203 (56%), Positives = 138/203 (67%), Gaps = 17/203 (8%)
Query: 20 PTHSQCLDNPPDLTAGG-GEAGVVVHDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLLR 78
P CLDNPP+LTA G EAGVV+ DLAGF AYVTG VHS +A+++ASD++GFEAPLLR
Sbjct: 31 PLRLPCLDNPPELTADGDSEAGVVIDDLAGFPAYVTGDVHSGRAIIVASDIYGFEAPLLR 90
Query: 79 KIADKVGQAGYYVAVPDFFHGDPYTLD--LNLTEWFSKHSPMKILSSCTYQDAQIKPQIK 136
ADKVG+AGYYV VPDFFHG PY D +N+T+W + HSP+K A +K + K
Sbjct: 91 DNADKVGEAGYYVVVPDFFHGQPYNGDPSINVTKWITLHSPVKAAEDAKSIFAALKREGK 150
Query: 137 --------------QNYIQRKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGA 182
Q + KFAVEVAKTNEVEAIV +HP V DD+K VKCPIEI+G
Sbjct: 151 SVIGIGGYCWGVSAQVQLTAKFAVEVAKTNEVEAIVISHPSEVIADDMKGVKCPIEILGG 210
Query: 183 QNDTLTPPKLVYQYVQALRHRTD 205
QND +TPP LV Q+V LR T+
Sbjct: 211 QNDHITPPSLVDQFVNVLRQTTE 233
>Os05g0400200
Length = 290
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 115/185 (62%), Gaps = 9/185 (4%)
Query: 25 CLDNPPDLTAG-GGEAGVVVHDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLLRKIADK 83
CLDN P++T GGEAG VVHD G E YVTG+ S +A++L SD +GF AP LR+IADK
Sbjct: 47 CLDNSPNMTEKTGGEAGEVVHDYGGLECYVTGSRRSGRAIILVSDYYGFRAPKLRQIADK 106
Query: 84 VGQAGYYVAVPDFFHGDPYTLD--LNLTEWFSKHSP------MKILSSCTYQDAQIKPQI 135
V +GYYV VPD +GDPYT D W HSP K L + ++ +
Sbjct: 107 VAYSGYYVVVPDLLYGDPYTDDPARPFWVWIMAHSPEEAAEKTKPLIAVLKKEGMSSVGV 166
Query: 136 KQNYIQRKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLTPPKLVYQ 195
K AVE++KT E +A+V +HP LVTV D+ EVK PIEI+G + DT+TPP +V+Q
Sbjct: 167 GGYCWGGKVAVELSKTEETQAVVISHPSLVTVHDMTEVKRPIEILGGERDTITPPLVVHQ 226
Query: 196 YVQAL 200
+ AL
Sbjct: 227 FEHAL 231
>Os05g0400100 Dienelactone hydrolase domain containing protein
Length = 290
Score = 164 bits (415), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/192 (48%), Positives = 117/192 (60%), Gaps = 11/192 (5%)
Query: 20 PTHSQCLDNPPDLTAG-GGEAGVVVHDLAGFEAYVTGAVHST-KAVLLASDVFGFEAPLL 77
P CL+NPP++T GGEAG VVH G E Y TG+ S +AV+L SD +GF AP L
Sbjct: 44 PQKHPCLENPPNMTENTGGEAGDVVHGYGGLECYATGSRRSGGRAVILVSDYYGFRAPKL 103
Query: 78 RKIADKVG-QAGYYVAVPDFFHGDPYTLD--LNLTEWFSKHSPM------KILSSCTYQD 128
RKIADKV Q G YV VPD GDPYT D EW HSP+ K L + +D
Sbjct: 104 RKIADKVAYQLGCYVVVPDLLFGDPYTDDPARPFEEWIKTHSPVEAAEKTKPLIAALKKD 163
Query: 129 AQIKPQIKQNYIQRKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLT 188
+ K AVE++KT E +A+V +HP LV VDD+KEVKCPIEI+G + DT++
Sbjct: 164 GTSTVGVGGYCWGGKVAVELSKTEETKAVVISHPALVVVDDMKEVKCPIEILGGELDTIS 223
Query: 189 PPKLVYQYVQAL 200
PP+L++Q AL
Sbjct: 224 PPQLIHQLEDAL 235
>Os05g0399100 Similar to Endo-1,3
Length = 284
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 116/195 (59%), Gaps = 20/195 (10%)
Query: 24 QCLDNPPDLTAGGGEAGVVVHDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLLRKIADK 83
QC NPP L GGE G VV G +AYV GA S AV+L SDVFGFEAP LRKIADK
Sbjct: 49 QCCANPPTLNPAGGE-GKVVESFGGIKAYVAGAAESKAAVVLISDVFGFEAPNLRKIADK 107
Query: 84 VGQAGYYVAVPDFFHGDPY---TLDLNLTEWFSKHSPMKILSSCTYQDAQ-IKPQIKQNY 139
V +GY+V VPDF HGDP + + W +H P K +++A+ I +K+
Sbjct: 108 VASSGYFVVVPDFLHGDPLVPESTEKPFQMWIKEHGPDK-----AFEEAKPIIAALKEKG 162
Query: 140 IQR----------KFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLTP 189
+ K VE+ K +E++A V HP VTVDD+KEVKCPI I+GA+ D ++P
Sbjct: 163 VSSIGAVGYCWGAKVVVELVKAHEIQAAVMCHPSFVTVDDMKEVKCPIAILGAEIDRMSP 222
Query: 190 PKLVYQYVQALRHRT 204
P++V Q+ Q L ++
Sbjct: 223 PEVVKQFEQVLSSKS 237
>Os05g0399200 Similar to Endo-1,3
Length = 239
Score = 157 bits (397), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/187 (47%), Positives = 111/187 (59%), Gaps = 11/187 (5%)
Query: 23 SQCLDNPPDLTAGGGEAGVVVHDLAGFEAYVTGAVHSTKAVLLASDVFGFEAPLLRKIAD 82
SQC +NPP L GG G VV D G +AYV G+ S AV+L SD FGFEAP LRKIAD
Sbjct: 4 SQCWENPPALDPAGG-GGEVVGDFGGQKAYVAGSAGSKAAVVLISDAFGFEAPNLRKIAD 62
Query: 83 KVGQAGYYVAVPDFFHGDPYTLD--LNLTEWFSKHSPMKILSSCTYQDAQIKPQIKQNYI 140
KV GY+V VPDF HGDPY D N W H+P + A +K + ++I
Sbjct: 63 KVALFGYFVVVPDFLHGDPYQPDNPNNPGIWLQSHNPKEAFEEAKPVIAALK-EKGASFI 121
Query: 141 -------QRKFAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLTPPKLV 193
K VE+ K +E++A V HP L+ VDDIKEVKCPI I+GA+ D +PP+L+
Sbjct: 122 GAAGYCWGAKVVVELGKVHEIQAAVLLHPSLLAVDDIKEVKCPISILGAEIDKTSPPELL 181
Query: 194 YQYVQAL 200
Q+ Q L
Sbjct: 182 KQFEQIL 188
>Os08g0238600 Similar to Endo-1,3
Length = 173
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 80/122 (65%), Gaps = 6/122 (4%)
Query: 90 YVAVPDFFHGDPYTLDLNLTEWFSKHSPMKILSSCTYQDAQIKPQIKQ-----NYIQR-K 143
YV VPD FHGDP T +N TEW HSP+K A ++ + K Y K
Sbjct: 6 YVVVPDLFHGDPATTSVNFTEWLESHSPVKEAEKAKSIFAFLRNEGKSVVGVGGYCWGGK 65
Query: 144 FAVEVAKTNEVEAIVTTHPGLVTVDDIKEVKCPIEIIGAQNDTLTPPKLVYQYVQALRHR 203
FAV VAKTNEVEA+V +HP VT DD+KEVK PIEI+G QNDT+TPP+LVYQYV ALR R
Sbjct: 66 FAVTVAKTNEVEAVVISHPYAVTADDMKEVKWPIEILGGQNDTVTPPRLVYQYVHALRQR 125
Query: 204 TD 205
D
Sbjct: 126 ND 127
>Os08g0283600
Length = 290
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query: 78 RKIADKVGQAGYYVAVPDFFHGDPYTLD--LNLTEWFSKHSPMKILSSCTYQDAQIKPQI 135
RKIADKVG+AGYYV VPDFFHG PY + +N+T+W HSP+K A +K
Sbjct: 87 RKIADKVGEAGYYVVVPDFFHGRPYNGEPSINITQWIMAHSPVKAAEDAKLIFAALK--- 143
Query: 136 KQNYIQRKFAVEVA 149
+RK VEV
Sbjct: 144 ----RERKSIVEVG 153
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,891,528
Number of extensions: 255965
Number of successful extensions: 596
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 569
Number of HSP's successfully gapped: 13
Length of query: 208
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 112
Effective length of database: 12,023,257
Effective search space: 1346604784
Effective search space used: 1346604784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)