BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0634600 Os07g0634600|AK065122
(411 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0634600 Similar to Pectin acetylesterase (Fragment) 822 0.0
Os01g0319000 Similar to Pectin acetylesterase (Fragment) 464 e-131
Os02g0702400 Pectinacetylesterase family protein 456 e-128
Os01g0974500 Pectinacetylesterase family protein 418 e-117
Os04g0602500 Similar to Pectin acetylesterase 399 e-111
Os01g0892600 Pectinacetylesterase family protein 384 e-107
Os10g0550500 Similar to Pectinacetylesterase 223 2e-58
Os05g0111900 Similar to Pectinacetylesterase precursor 180 1e-45
Os01g0892400 Pectinacetylesterase family protein 137 2e-32
Os01g0892500 Pectinacetylesterase family protein 100 3e-21
>Os07g0634600 Similar to Pectin acetylesterase (Fragment)
Length = 411
Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/411 (96%), Positives = 397/411 (96%)
Query: 1 MGCSWXXXXXXXXXXXXXXHGSEPWLNQTQVYSTNANSGSNGVFVGITLIQSAAAKGAVC 60
MGCSW HGSEPWLNQTQVYSTNANSGSNGVFVGITLIQSAAAKGAVC
Sbjct: 1 MGCSWALAALVLGFLVVAVHGSEPWLNQTQVYSTNANSGSNGVFVGITLIQSAAAKGAVC 60
Query: 61 LDGSLPGYHLHRGFGSGANSWLVNLEGGGWCNDVKSCVFRKSSRRGSSNHMESQLQFTGI 120
LDGSLPGYHLHRGFGSGANSWLVNLEGGGWCNDVKSCVFRKSSRRGSSNHMESQLQFTGI
Sbjct: 61 LDGSLPGYHLHRGFGSGANSWLVNLEGGGWCNDVKSCVFRKSSRRGSSNHMESQLQFTGI 120
Query: 121 MSNRPEENPDFYNWNRVKVRYCDGGSFTGDGADASAGLYFRGQRIWQAAMDDLMAQGMRY 180
MSNRPEENPDFYNWNRVKVRYCDGGSFTGDGADASAGLYFRGQRIWQAAMDDLMAQGMRY
Sbjct: 121 MSNRPEENPDFYNWNRVKVRYCDGGSFTGDGADASAGLYFRGQRIWQAAMDDLMAQGMRY 180
Query: 181 ANQALLSGCSAGGVSTILHCDEFRGLFSGSTNVKCLADAGMFLDFVDVSGQREMRDFFNG 240
ANQALLSGCSAGGVSTILHCDEFRGLFSGSTNVKCLADAGMFLDFVDVSGQREMRDFFNG
Sbjct: 181 ANQALLSGCSAGGVSTILHCDEFRGLFSGSTNVKCLADAGMFLDFVDVSGQREMRDFFNG 240
Query: 241 IVRLQGSGRSLPRSCTSRMDKTSCFFPQNVVPNIQTPTFILNTAYDVWQLQQSVAPKRAD 300
IVRLQGSGRSLPRSCTSRMDKTSCFFPQNVVPNIQTPTFILNTAYDVWQLQQSVAPKRAD
Sbjct: 241 IVRLQGSGRSLPRSCTSRMDKTSCFFPQNVVPNIQTPTFILNTAYDVWQLQQSVAPKRAD 300
Query: 301 PQGLWRGCRMNHASCNSNQLQFLQGFRNQMLDAVRGFSGARQNGLFINSCFAHCQSERQD 360
PQGLWRGCRMNHASCNSNQLQFLQGFRNQMLDAVRGFSGARQNGLFINSCFAHCQSERQD
Sbjct: 301 PQGLWRGCRMNHASCNSNQLQFLQGFRNQMLDAVRGFSGARQNGLFINSCFAHCQSERQD 360
Query: 361 TWYAGDSPRLGNKRIAEAVGDWFFDRADAKYTDCAYPCDGTCHHLTFRGDY 411
TWYAGDSPRLGNKRIAEAVGDWFFDRADAKYTDCAYPCDGTCHHLTFRGDY
Sbjct: 361 TWYAGDSPRLGNKRIAEAVGDWFFDRADAKYTDCAYPCDGTCHHLTFRGDY 411
>Os01g0319000 Similar to Pectin acetylesterase (Fragment)
Length = 418
Score = 464 bits (1193), Expect = e-131, Method: Compositional matrix adjust.
Identities = 211/364 (57%), Positives = 266/364 (73%), Gaps = 1/364 (0%)
Query: 43 VFVGITLIQSAAAKGAVCLDGSLPGYHLHRGFGSGANSWLVNLEGGGWCNDVKSCVFRKS 102
V V IT++ SA KGAVC+DG+ P YHL G G G SW+VNLEGGGWCN+ ++C FR +
Sbjct: 56 VMVPITILNSAVDKGAVCMDGTPPAYHLDPGSGGGNRSWVVNLEGGGWCNNARTCRFRTA 115
Query: 103 SRRGSSNHMESQLQFTGIMSNRPEENPDFYNWNRVKVRYCDGGSFTGDGADASAGLYFRG 162
SR GSS+HME ++ FTGIMS+ +NPDF++WNRVK+RYCD GSF GD + L FRG
Sbjct: 116 SRHGSSDHMERRIAFTGIMSSAAADNPDFHSWNRVKIRYCDSGSFAGDAFNEGLKLQFRG 175
Query: 163 QRIWQAAMDDLMAQGMRYANQALLSGCSAGGVSTILHCDEFRGLFSGSTNVKCLADAGMF 222
QRIW A + L+ GM A LL+GCSAGG++ ILHCD+ R L + VKCL+D G+F
Sbjct: 176 QRIWGAVIQHLLDVGMASAEHVLLTGCSAGGLAAILHCDQLRALLPAAATVKCLSDGGLF 235
Query: 223 LDFVDVSGQREMRDFFNGIVRLQGSGRSLPRSCTSRMDKTSCFFPQNVVPNIQTPTFILN 282
LD VDV+G R +R ++ +V LQ +LP +CT +D TSCFFPQN++ I+TP F+LN
Sbjct: 236 LDAVDVAGGRSLRSYYGDVVGLQAVAPNLPETCTDHLDATSCFFPQNIIDGIKTPIFLLN 295
Query: 283 TAYDVWQLQQSVAPKRADPQGLWRGCRMNHASCNSNQLQFLQGFRNQMLDAVRGFSGARQ 342
AYDVWQ++QS+AP AD G WR C+ N A+CN++QLQFLQGFR+QM+ AVR FS +R
Sbjct: 296 AAYDVWQIEQSLAPNAADTSGTWRVCKFNRAACNASQLQFLQGFRDQMVAAVRVFSESRS 355
Query: 343 NGLFINSCFAHCQSERQDTWYAGDSPRLGNKRIAEAVGDWFFDRADAKYTDCAYPCDGTC 402
NGLFINSCFAHCQSE TW G SP L NK IA++VGDW+F RA+ K DC YPCD TC
Sbjct: 356 NGLFINSCFAHCQSELTATWNGG-SPALQNKGIAKSVGDWYFGRAEVKAIDCPYPCDKTC 414
Query: 403 HHLT 406
H++
Sbjct: 415 HNII 418
>Os02g0702400 Pectinacetylesterase family protein
Length = 397
Score = 456 bits (1174), Expect = e-128, Method: Compositional matrix adjust.
Identities = 211/369 (57%), Positives = 262/369 (71%), Gaps = 2/369 (0%)
Query: 41 NGVFVGITLIQSAAAKGAVCLDGSLPGYHLHRGFGSGANSWLVNLEGGGWCNDVKSCVFR 100
+G FV IT + SA AKGAVCLDGS P YHL RGFGSG NSWLV+ EGGGWC++V +C+ R
Sbjct: 23 DGDFVDITYVASAVAKGAVCLDGSPPAYHLARGFGSGVNSWLVHFEGGGWCSNVTTCLQR 82
Query: 101 KSSRRGSSNHMESQLQFTGIMSNRPEENPDFYNWNRVKVRYCDGGSFTGD--GADASAGL 158
K +R GSS M Q+ F+GI+SN P+ NPDFYNWN+VKVRYCDG SFTGD D + L
Sbjct: 83 KRTRLGSSKQMAKQIAFSGILSNTPDYNPDFYNWNKVKVRYCDGSSFTGDVEKVDPATKL 142
Query: 159 YFRGQRIWQAAMDDLMAQGMRYANQALLSGCSAGGVSTILHCDEFRGLFSGSTNVKCLAD 218
++RG R+WQA MDDL+A+GM AN AL+SGCSAGG+++ILHCD FR LF T VKCL+D
Sbjct: 143 HYRGARVWQAVMDDLLAKGMNSANNALISGCSAGGLTSILHCDRFRDLFPVDTKVKCLSD 202
Query: 219 AGMFLDFVDVSGQREMRDFFNGIVRLQGSGRSLPRSCTSRMDKTSCFFPQNVVPNIQTPT 278
AG F++ D++G + FFNG+ GS ++LP +CTSR+ CFFPQN V IQTP
Sbjct: 203 AGFFINEKDIAGVEYIVAFFNGVATTHGSAKNLPSACTSRLSPGMCFFPQNEVKQIQTPL 262
Query: 279 FILNTAYDVWQLQQSVAPKRADPQGLWRGCRMNHASCNSNQLQFLQGFRNQMLDAVRGFS 338
FILN AYD WQ++ + P ADP G W C+ + C ++QLQ LQGFR+ L A++
Sbjct: 263 FILNAAYDSWQVRNILVPGFADPHGKWHSCKHDIDQCPASQLQILQGFRDDFLKALKEQG 322
Query: 339 GARQNGLFINSCFAHCQSERQDTWYAGDSPRLGNKRIAEAVGDWFFDRADAKYTDCAYPC 398
GLFINSCF HCQSE Q+TW+A SP L K IA+AVGDWF+DR + DC YPC
Sbjct: 323 TPSTRGLFINSCFVHCQSETQETWFASGSPMLETKTIADAVGDWFYDRNPFQKIDCPYPC 382
Query: 399 DGTCHHLTF 407
D TCH+ +
Sbjct: 383 DSTCHNRIY 391
>Os01g0974500 Pectinacetylesterase family protein
Length = 430
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 190/372 (51%), Positives = 250/372 (67%), Gaps = 4/372 (1%)
Query: 43 VFVGITLIQSAAAKGAVCLDGSLPGYHLHRGFGSGANSWLVNLEGGGWCNDVKSCVFRKS 102
V +TL+ A KGAVCLDG+ PGYH GFG G+N WL++LEGG WC + SC RK
Sbjct: 57 TLVDLTLVHGAKEKGAVCLDGTPPGYHWLPGFGDGSNKWLLHLEGGSWCRNRTSCDHRKK 116
Query: 103 SRRGSSNHMESQLQFTGIMSNRPEENPDFYNWNRVKVRYCDGGSFTGDGADAS---AGLY 159
+ GSS +ME++++F GI+S+ +NPDFYNWN+VK+RYCDG S +G+ D A +
Sbjct: 117 TSLGSSAYMETRVEFVGILSDDKAQNPDFYNWNKVKIRYCDGASLSGNVQDEHQYGATFF 176
Query: 160 FRGQRIWQAAMDDLMAQGMRYANQALLSGCSAGGVSTILHCDEFRGLFSGSTNVKCLADA 219
FRGQRIW+A M +L+ +G+ A QA L+GCSAGG+ST +HCD+FR L + VKCLAD
Sbjct: 177 FRGQRIWEAVMAELLPKGLARAKQAFLTGCSAGGLSTYIHCDDFRALLPKDSTVKCLADG 236
Query: 220 GMFLDFVDVSGQREMRDFFNGIVRLQGSGRSLPRSCTSRMDKTSCFFPQNVVPNIQTPTF 279
G FLD D+SG+R MR F+N + R Q + P C+S M+ CFFPQ V I TP F
Sbjct: 237 GFFLDVEDISGRRYMRGFYNDVARQQDLRKRFP-GCSSDMEPGQCFFPQEVAKGITTPMF 295
Query: 280 ILNTAYDVWQLQQSVAPKRADPQGLWRGCRMNHASCNSNQLQFLQGFRNQMLDAVRGFSG 339
ILN AYDVWQ++ + P +DPQ LW+ CRM+ CN+ QL+ LQGFR +LDA+ F
Sbjct: 296 ILNPAYDVWQVEHVLTPDGSDPQNLWQDCRMDITKCNTKQLEILQGFRKSLLDAISEFKK 355
Query: 340 ARQNGLFINSCFAHCQSERQDTWYAGDSPRLGNKRIAEAVGDWFFDRADAKYTDCAYPCD 399
R G+FI+SCF HCQS + W++ + R+ NK +AEAVGDWFFDR + K DC YPC+
Sbjct: 356 KRGWGMFIDSCFIHCQSMKSLAWHSPSASRINNKTVAEAVGDWFFDRREVKEIDCEYPCN 415
Query: 400 GTCHHLTFRGDY 411
TC ++ Y
Sbjct: 416 PTCFNVVLEQPY 427
>Os04g0602500 Similar to Pectin acetylesterase
Length = 466
Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/377 (50%), Positives = 252/377 (66%), Gaps = 8/377 (2%)
Query: 31 VYSTNANSGSNGVFVGITLIQSAAAKGAVCLDGSLPGYHLHRGFGSGANSWLVNLEGGGW 90
V +++A +G V + ++SA + GAVCLDGS P YH G GSGAN+WLV++EGGGW
Sbjct: 91 VVASSAKAGD----VDMVFLKSAVSTGAVCLDGSPPVYHFSPGSGSGANNWLVHMEGGGW 146
Query: 91 CNDVKSCVFRKSSRRGSSNHMESQLQFTGIMSNRPEENPDFYNWNRVKVRYCDGGSFTGD 150
C + + C R+ + RGSS M L F+GI+ NPDFYNWNR+KVRYCDG SFTGD
Sbjct: 147 CRNAQECSVRQGNFRGSSKFMR-PLSFSGIIGGNQRNNPDFYNWNRIKVRYCDGSSFTGD 205
Query: 151 --GADASAGLYFRGQRIWQAAMDDLMAQGMRYANQALLSGCSAGGVSTILHCDEFRGLFS 208
+ S L+FRG R+W A ++DL+A+GM A ALLSGCSAGG++ ILHCD+FR L
Sbjct: 206 VETVETSTNLHFRGARVWNAIIEDLLAKGMSKAQNALLSGCSAGGLAAILHCDQFRDLLP 265
Query: 209 GSTNVKCLADAGMFLDFVDVSGQREMRDFFNGIVRLQGSGRSLPRSCTSRMDKTSCFFPQ 268
+ NVKC +DAG F+D D++G +R F+ +V L GS ++LP SCTS+M CFFPQ
Sbjct: 266 ATANVKCFSDAGFFVDGKDITGNDFVRTFYKDVVNLHGSAKNLPSSCTSKMSPDLCFFPQ 325
Query: 269 NVVPNIQTPTFILNTAYDVWQLQQSVAPKRADPQGLWRGCRMNHASCNSNQLQFLQGFRN 328
NVVP ++TP FILN AYD WQ++ +AP AD + W C+++ +C+S+QL LQ FR
Sbjct: 326 NVVPTLRTPLFILNAAYDAWQIKNVLAPSAADKKKTWAKCKLDITACSSSQLTTLQNFRT 385
Query: 329 QMLDAVRGFSGARQN-GLFINSCFAHCQSERQDTWYAGDSPRLGNKRIAEAVGDWFFDRA 387
L A+ + N +FI+SC+AHCQS QDTW A SP + +I +AVGDWF DR
Sbjct: 386 DFLAALPKPEQSPANLSIFIDSCYAHCQSGSQDTWLAQGSPVVEKTQIGKAVGDWFHDRE 445
Query: 388 DAKYTDCAYPCDGTCHH 404
++ DC YPC+ TC +
Sbjct: 446 VSRRIDCPYPCNPTCKN 462
>Os01g0892600 Pectinacetylesterase family protein
Length = 396
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 180/362 (49%), Positives = 243/362 (67%), Gaps = 5/362 (1%)
Query: 45 VGITLIQSAAAKGAVCLDGSLPGYHLHRGFGSGANSWLVNLEGGGWCNDVKSCVFRKSSR 104
V +TL+ A KGAVCLDGS PGYHL RGFGSG +SW ++L+GG WCN ++ C RK S
Sbjct: 30 VELTLLTGAREKGAVCLDGSPPGYHLQRGFGSGEHSWFIHLQGGAWCNTIEDCSKRKMSA 89
Query: 105 RGSSNHMESQLQFTGIMSNRPEENPDFYNWNRVKVRYCDGGSFTGDGADAS---AGLYFR 161
GSS M + ++F GI+SN + N DFYNWNRV +RYCDG SF+GDG + L+FR
Sbjct: 90 YGSSKFMRA-VEFNGILSNDQQLNSDFYNWNRVFIRYCDGASFSGDGEAQDQDGSTLHFR 148
Query: 162 GQRIWQAAMDDLMAQGMRYANQALLSGCSAGGVSTILHCDEFRGLFSGSTNVKCLADAGM 221
G RIW+A +++LM +G+ A QA+LSGCSAGG++ +LHC++F FS + KCL DAG
Sbjct: 149 GLRIWEAVINELMGKGLATAKQAILSGCSAGGLAALLHCNDFYARFSKEVSAKCLPDAGF 208
Query: 222 FLDFVDVSGQREMRDFFNGIVRLQGSGRSLPRSCTSRMDKTSCFFPQNVVPNIQTPTFIL 281
FLD D+SG+R M FNG V LQ + L + C ++ D T CFFP +V +I PT IL
Sbjct: 209 FLDIEDLSGERHMWSVFNGTVHLQNVTQVLSKDCLAKKDPTECFFPAELVKSITAPTLIL 268
Query: 282 NTAYDVWQLQQSVAPKRADPQGLWRGCRMNHASCNSNQLQFLQGFRNQMLDAVRGFSGAR 341
N+AYD WQ+Q ++AP + P W C+ + +C+S Q+Q GFRN+ +D + +
Sbjct: 269 NSAYDSWQIQNALAPDGSFPGQSWSSCKTDIRNCSSTQIQVFNGFRNKFVDDIEVVKDKK 328
Query: 342 QNGLFINSCFAHCQSERQDTWYAGDSPRLGNKRIAEAVGDWFFDRA-DAKYTDCAYPCDG 400
GLFI+SCF HCQ+ +W + SP LGNK +AEA+GDW+F+R+ + K DC YPC+
Sbjct: 329 DWGLFIDSCFTHCQTPFDISWNSQASPVLGNKIVAEAIGDWYFERSYEVKEIDCEYPCNP 388
Query: 401 TC 402
TC
Sbjct: 389 TC 390
>Os10g0550500 Similar to Pectinacetylesterase
Length = 211
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 107/184 (58%), Positives = 135/184 (73%), Gaps = 2/184 (1%)
Query: 43 VFVGITLIQSAAAKGAVCLDGSLPGYHLHRGFGSGANSWLVNLEGGGWCNDVKSCVFRKS 102
+ VG+TL+Q+A + GAVCLDGS P YHLHRG G GA W++ EGGGWCND SC R
Sbjct: 27 LVVGMTLLQAATSTGAVCLDGSPPAYHLHRGSGGGAGGWVLQFEGGGWCNDAPSCAERAG 86
Query: 103 SRRGSSNHMESQLQFTGIMSNRPEENPDFYNWNRVKVRYCDGGSFTGDGA--DASAGLYF 160
+RRGS+ M+S F+G++SN P+ NPDFYNWNRVK+RYCDGGSF GD + S+ LYF
Sbjct: 87 TRRGSTRSMDSLEVFSGLLSNDPDMNPDFYNWNRVKLRYCDGGSFAGDSELRNGSSVLYF 146
Query: 161 RGQRIWQAAMDDLMAQGMRYANQALLSGCSAGGVSTILHCDEFRGLFSGSTNVKCLADAG 220
RGQRIW A + DL+ +G+ A + LLSGCSAGG++T HCD+ +G + VKCL+DAG
Sbjct: 147 RGQRIWDAIISDLLPKGLAKAQKVLLSGCSAGGLATFFHCDDLKGRLGDAVTVKCLSDAG 206
Query: 221 MFLD 224
FLD
Sbjct: 207 FFLD 210
>Os05g0111900 Similar to Pectinacetylesterase precursor
Length = 203
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/160 (54%), Positives = 117/160 (73%), Gaps = 7/160 (4%)
Query: 34 TNANSGSNGVFVGITLIQSAAAKGAVCLDGSLPGYHLHRGFGSGANSWLVNLEGGGWCND 93
T +S SN VG+TL++ A KGAVCLDGS PGYHL RG G+G+ +WL++LEGGGWC +
Sbjct: 33 TTPSSSSN--LVGLTLVRRAKEKGAVCLDGSAPGYHLQRGSGTGSQNWLLHLEGGGWCRN 90
Query: 94 VKSCVFRKSSRRGSSNHMESQLQFTGIMSNRPEENPDFYNWNRVKVRYCDGGSFTGDGAD 153
++SC R+ S GSS +ME Q++F GI+SN +NPDFYNWN+VK+RYCDG SF+G+ +
Sbjct: 91 LRSCASRQKSVLGSSQYMECQIEFAGILSNDKFQNPDFYNWNKVKIRYCDGASFSGNVKN 150
Query: 154 A---SAGLYFRGQRIWQAAMDDLMAQGMRYANQALLSGCS 190
+FRGQRIW+A M +L+ +G+R+A Q LSG S
Sbjct: 151 ELQNGTKFFFRGQRIWEAVMSELLLKGLRHAKQ--LSGFS 188
>Os01g0892400 Pectinacetylesterase family protein
Length = 163
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 78/107 (72%), Gaps = 1/107 (0%)
Query: 45 VGITLIQSAAAKGAVCLDGSLPGYHLHRGFGSGANSWLVNLEGGGWCNDVKSCVFRKSSR 104
V +TL+ A KGAVCLDGS PGYHL RGFGSG +SWLV LEGG WCN ++SC RK
Sbjct: 43 VELTLLAGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLVFLEGGAWCNSIESCSRRKMGV 102
Query: 105 RGSSNHMESQLQFTGIMSNRPEENPDFYNWNRVKVRYCDGGSFTGDG 151
GSS M++ +F GI+SN + N DFYNWN+V +RYCDG SF+GD
Sbjct: 103 YGSSKFMKAA-EFNGILSNDQQLNSDFYNWNKVAIRYCDGASFSGDA 148
>Os01g0892500 Pectinacetylesterase family protein
Length = 119
Score = 99.8 bits (247), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/84 (57%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 45 VGITLIQSAAAKGAVCLDGSLPGYHLHRGFGSGANSWLVNLEGGGWCNDVKSCVFRKSSR 104
V + L+ A KGAVCLDGS PGYHL RGFGSG +SWL+ LEGG WC+ ++SC RK++
Sbjct: 32 VELILLTGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLIYLEGGEWCDTIESCSNRKTTE 91
Query: 105 RGSSNHMESQLQFTGIMSNRPEEN 128
GSS ME+Q +F GI+SN N
Sbjct: 92 LGSSKLMEAQ-EFEGILSNNQTVN 114
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,088,533
Number of extensions: 684530
Number of successful extensions: 1603
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1590
Number of HSP's successfully gapped: 10
Length of query: 411
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 308
Effective length of database: 11,657,759
Effective search space: 3590589772
Effective search space used: 3590589772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)