Os02g0702400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pectinacetylesterase family protein.
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Os02g0702400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pectinacetylesterase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 186.14 | 0.641 | 5.76 | -2.33 | 1.1 | -1.73 | 1.04 | 0.413 | -1.13 | 4.48 | 22.51 | 1487 | -- | -- |
| 184.58 | 0.633 | 5.75 | -2.23 | 1.1 | -1.81 | 1.08 | -- | -1.1 | 4.47 | 22.21 | 1485 | -- | -- |
| 188.08 | 0.639 | 5.77 | -2.34 | 1.11 | -1.76 | -- | 0.368 | -1.13 | 4.61 | 22.3 | 1456 | -- | -- |
| 187.77 | 0.638 | 5.75 | -2.24 | 1.11 | -1.81 | -- | -- | -1.1 | 4.52 | 22.23 | 1485 | -- | -- |
| 249.49 | 0.736 | 5.76 | -2.2 | -- | -1.87 | -- | -0.0293 | -1.09 | -- | 22.27 | 1325 | -- | -- |
| 307.07 | 0.822 | 5.61 | -1.58 | 1.17 | -- | 1.06 | -- | -0.481 | 4.41 | -- | -- | -- | -- |
| 310.1 | 0.825 | 5.61 | -1.59 | 1.17 | -- | -- | -- | -0.487 | 4.44 | -- | -- | -- | -- |
| 249.49 | 0.736 | 5.76 | -2.21 | -- | -1.87 | -- | -- | -1.09 | -- | 22.28 | 1329 | -- | -- |
| 305.8 | 0.814 | 5.67 | -- | 1.06 | -1.23 | -- | -- | -0.73 | 4.7 | 22.82 | 1356 | -- | -- |
| 383.99 | 0.916 | 5.62 | -1.54 | -- | -- | -- | -- | -0.456 | -- | -- | -- | -- | -- |
| 376.34 | 0.907 | 5.57 | -- | 1.14 | -- | -- | -- | -0.31 | 4.47 | -- | -- | -- | -- |
| 364.41 | 0.889 | 5.68 | -- | -- | -1.31 | -- | -- | -0.736 | -- | 22.82 | 1269 | -- | -- |
| 446.49 | 0.986 | 5.58 | -- | -- | -- | -- | -- | -0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 192.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 4 | 192.34 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 8 | 192.41 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 72 | 193.00 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 76 | 193.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 102 | 193.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 104 | 193.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 109 | 193.16 | temperature | 10 | 1440 | > th | dose dependent | sin | 12 | NA |
| 110 | 193.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 6 |
| 139 | 193.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 146 | 193.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 147 | 193.27 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 211 | 193.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 878 | 196.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 887 | 196.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 949 | 196.97 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |