BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0702400 Os02g0702400|AK068668
(397 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0702400 Pectinacetylesterase family protein 828 0.0
Os04g0602500 Similar to Pectin acetylesterase 479 e-135
Os07g0634600 Similar to Pectin acetylesterase (Fragment) 457 e-129
Os01g0974500 Pectinacetylesterase family protein 406 e-113
Os01g0319000 Similar to Pectin acetylesterase (Fragment) 400 e-112
Os01g0892600 Pectinacetylesterase family protein 371 e-103
Os10g0550500 Similar to Pectinacetylesterase 210 2e-54
Os05g0111900 Similar to Pectinacetylesterase precursor 176 2e-44
Os01g0892400 Pectinacetylesterase family protein 146 3e-35
Os01g0892500 Pectinacetylesterase family protein 105 6e-23
>Os02g0702400 Pectinacetylesterase family protein
Length = 397
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/397 (100%), Positives = 397/397 (100%)
Query: 1 MANGGVCLSCSALVCALVFLTVDGDFVDITYVASAVAKGAVCLDGSPPAYHLARGFGSGV 60
MANGGVCLSCSALVCALVFLTVDGDFVDITYVASAVAKGAVCLDGSPPAYHLARGFGSGV
Sbjct: 1 MANGGVCLSCSALVCALVFLTVDGDFVDITYVASAVAKGAVCLDGSPPAYHLARGFGSGV 60
Query: 61 NSWLVHFEGGGWCSNVTTCLQRKRTRLGSSKQMAKQIAFSGILSNTPDYNPDFYNWNKVK 120
NSWLVHFEGGGWCSNVTTCLQRKRTRLGSSKQMAKQIAFSGILSNTPDYNPDFYNWNKVK
Sbjct: 61 NSWLVHFEGGGWCSNVTTCLQRKRTRLGSSKQMAKQIAFSGILSNTPDYNPDFYNWNKVK 120
Query: 121 VRYCDGSSFTGDVEKVDPATKLHYRGARVWQAVMDDLLAKGMNSANNALISGCSAGGLTS 180
VRYCDGSSFTGDVEKVDPATKLHYRGARVWQAVMDDLLAKGMNSANNALISGCSAGGLTS
Sbjct: 121 VRYCDGSSFTGDVEKVDPATKLHYRGARVWQAVMDDLLAKGMNSANNALISGCSAGGLTS 180
Query: 181 ILHCDRFRDLFPVDTKVKCLSDAGFFINEKDIAGVEYIVAFFNGVATTHGSAKNLPSACT 240
ILHCDRFRDLFPVDTKVKCLSDAGFFINEKDIAGVEYIVAFFNGVATTHGSAKNLPSACT
Sbjct: 181 ILHCDRFRDLFPVDTKVKCLSDAGFFINEKDIAGVEYIVAFFNGVATTHGSAKNLPSACT 240
Query: 241 SRLSPGMCFFPQNEVKQIQTPLFILNAAYDSWQVRNILVPGFADPHGKWHSCKHDIDQCP 300
SRLSPGMCFFPQNEVKQIQTPLFILNAAYDSWQVRNILVPGFADPHGKWHSCKHDIDQCP
Sbjct: 241 SRLSPGMCFFPQNEVKQIQTPLFILNAAYDSWQVRNILVPGFADPHGKWHSCKHDIDQCP 300
Query: 301 ASQLQILQGFRDDFLKALKEQGTPSTRGLFINSCFVHCQSETQETWFASGSPMLETKTIA 360
ASQLQILQGFRDDFLKALKEQGTPSTRGLFINSCFVHCQSETQETWFASGSPMLETKTIA
Sbjct: 301 ASQLQILQGFRDDFLKALKEQGTPSTRGLFINSCFVHCQSETQETWFASGSPMLETKTIA 360
Query: 361 DAVGDWFYDRNPFQKIDCPYPCDSTCHNRIYDDPSEA 397
DAVGDWFYDRNPFQKIDCPYPCDSTCHNRIYDDPSEA
Sbjct: 361 DAVGDWFYDRNPFQKIDCPYPCDSTCHNRIYDDPSEA 397
>Os04g0602500 Similar to Pectin acetylesterase
Length = 466
Score = 479 bits (1234), Expect = e-135, Method: Compositional matrix adjust.
Identities = 226/393 (57%), Positives = 284/393 (72%), Gaps = 7/393 (1%)
Query: 2 ANGGVCLSCSALVCALVFLTVD----GDFVDITYVASAVAKGAVCLDGSPPAYHLARGFG 57
A+ G LS +A+V L + GD VD+ ++ SAV+ GAVCLDGSPP YH + G G
Sbjct: 73 ASSGEWLSRAAMVLVLGLVVASSAKAGD-VDMVFLKSAVSTGAVCLDGSPPVYHFSPGSG 131
Query: 58 SGVNSWLVHFEGGGWCSNVTTCLQRKRTRLGSSKQMAKQIAFSGILSNTPDYNPDFYNWN 117
SG N+WLVH EGGGWC N C R+ GSSK M + ++FSGI+ NPDFYNWN
Sbjct: 132 SGANNWLVHMEGGGWCRNAQECSVRQGNFRGSSKFM-RPLSFSGIIGGNQRNNPDFYNWN 190
Query: 118 KVKVRYCDGSSFTGDVEKVDPATKLHYRGARVWQAVMDDLLAKGMNSANNALISGCSAGG 177
++KVRYCDGSSFTGDVE V+ +T LH+RGARVW A+++DLLAKGM+ A NAL+SGCSAGG
Sbjct: 191 RIKVRYCDGSSFTGDVETVETSTNLHFRGARVWNAIIEDLLAKGMSKAQNALLSGCSAGG 250
Query: 178 LTSILHCDRFRDLFPVDTKVKCLSDAGFFINEKDIAGVEYIVAFFNGVATTHGSAKNLPS 237
L +ILHCD+FRDL P VKC SDAGFF++ KDI G +++ F+ V HGSAKNLPS
Sbjct: 251 LAAILHCDQFRDLLPATANVKCFSDAGFFVDGKDITGNDFVRTFYKDVVNLHGSAKNLPS 310
Query: 238 ACTSRLSPGMCFFPQNEVKQIQTPLFILNAAYDSWQVRNILVPGFADPHGKWHSCKHDID 297
+CTS++SP +CFFPQN V ++TPLFILNAAYD+WQ++N+L P AD W CK DI
Sbjct: 311 SCTSKMSPDLCFFPQNVVPTLRTPLFILNAAYDAWQIKNVLAPSAADKKKTWAKCKLDIT 370
Query: 298 QCPASQLQILQGFRDDFLKAL-KEQGTPSTRGLFINSCFVHCQSETQETWFASGSPMLET 356
C +SQL LQ FR DFL AL K + +P+ +FI+SC+ HCQS +Q+TW A GSP++E
Sbjct: 371 ACSSSQLTTLQNFRTDFLAALPKPEQSPANLSIFIDSCYAHCQSGSQDTWLAQGSPVVEK 430
Query: 357 KTIADAVGDWFYDRNPFQKIDCPYPCDSTCHNR 389
I AVGDWF+DR ++IDCPYPC+ TC NR
Sbjct: 431 TQIGKAVGDWFHDREVSRRIDCPYPCNPTCKNR 463
>Os07g0634600 Similar to Pectin acetylesterase (Fragment)
Length = 411
Score = 457 bits (1176), Expect = e-129, Method: Compositional matrix adjust.
Identities = 211/369 (57%), Positives = 262/369 (71%), Gaps = 2/369 (0%)
Query: 23 DGDFVDITYVASAVAKGAVCLDGSPPAYHLARGFGSGVNSWLVHFEGGGWCSNVTTCLQR 82
+G FV IT + SA AKGAVCLDGS P YHL RGFGSG NSWLV+ EGGGWC++V +C+ R
Sbjct: 41 NGVFVGITLIQSAAAKGAVCLDGSLPGYHLHRGFGSGANSWLVNLEGGGWCNDVKSCVFR 100
Query: 83 KRTRLGSSKQMAKQIAFSGILSNTPDYNPDFYNWNKVKVRYCDGSSFTGDVEKVDPATKL 142
K +R GSS M Q+ F+GI+SN P+ NPDFYNWN+VKVRYCDG SFTGD D + L
Sbjct: 101 KSSRRGSSNHMESQLQFTGIMSNRPEENPDFYNWNRVKVRYCDGGSFTGD--GADASAGL 158
Query: 143 HYRGARVWQAVMDDLLAKGMNSANNALISGCSAGGLTSILHCDRFRDLFPVDTKVKCLSD 202
++RG R+WQA MDDL+A+GM AN AL+SGCSAGG+++ILHCD FR LF T VKCL+D
Sbjct: 159 YFRGQRIWQAAMDDLMAQGMRYANQALLSGCSAGGVSTILHCDEFRGLFSGSTNVKCLAD 218
Query: 203 AGFFINEKDIAGVEYIVAFFNGVATTHGSAKNLPSACTSRLSPGMCFFPQNEVKQIQTPL 262
AG F++ D++G + FFNG+ GS ++LP +CTSR+ CFFPQN V IQTP
Sbjct: 219 AGMFLDFVDVSGQREMRDFFNGIVRLQGSGRSLPRSCTSRMDKTSCFFPQNVVPNIQTPT 278
Query: 263 FILNAAYDSWQVRNILVPGFADPHGKWHSCKHDIDQCPASQLQILQGFRDDFLKALKEQG 322
FILN AYD WQ++ + P ADP G W C+ + C ++QLQ LQGFR+ L A++
Sbjct: 279 FILNTAYDVWQLQQSVAPKRADPQGLWRGCRMNHASCNSNQLQFLQGFRNQMLDAVRGFS 338
Query: 323 TPSTRGLFINSCFVHCQSETQETWFASGSPMLETKTIADAVGDWFYDRNPFQKIDCPYPC 382
GLFINSCF HCQSE Q+TW+A SP L K IA+AVGDWF+DR + DC YPC
Sbjct: 339 GARQNGLFINSCFAHCQSERQDTWYAGDSPRLGNKRIAEAVGDWFFDRADAKYTDCAYPC 398
Query: 383 DSTCHNRIY 391
D TCH+ +
Sbjct: 399 DGTCHHLTF 407
>Os01g0974500 Pectinacetylesterase family protein
Length = 430
Score = 406 bits (1043), Expect = e-113, Method: Compositional matrix adjust.
Identities = 186/372 (50%), Positives = 243/372 (65%), Gaps = 2/372 (0%)
Query: 26 FVDITYVASAVAKGAVCLDGSPPAYHLARGFGSGVNSWLVHFEGGGWCSNVTTCLQRKRT 85
VD+T V A KGAVCLDG+PP YH GFG G N WL+H EGG WC N T+C RK+T
Sbjct: 58 LVDLTLVHGAKEKGAVCLDGTPPGYHWLPGFGDGSNKWLLHLEGGSWCRNRTSCDHRKKT 117
Query: 86 RLGSSKQMAKQIAFSGILSNTPDYNPDFYNWNKVKVRYCDGSSFTGDVE-KVDPATKLHY 144
LGSS M ++ F GILS+ NPDFYNWNKVK+RYCDG+S +G+V+ + +
Sbjct: 118 SLGSSAYMETRVEFVGILSDDKAQNPDFYNWNKVKIRYCDGASLSGNVQDEHQYGATFFF 177
Query: 145 RGARVWQAVMDDLLAKGMNSANNALISGCSAGGLTSILHCDRFRDLFPVDTKVKCLSDAG 204
RG R+W+AVM +LL KG+ A A ++GCSAGGL++ +HCD FR L P D+ VKCL+D G
Sbjct: 178 RGQRIWEAVMAELLPKGLARAKQAFLTGCSAGGLSTYIHCDDFRALLPKDSTVKCLADGG 237
Query: 205 FFINEKDIAGVEYIVAFFNGVATTHGSAKNLPSACTSRLSPGMCFFPQNEVKQIQTPLFI 264
FF++ +DI+G Y+ F+N VA K P C+S + PG CFFPQ K I TP+FI
Sbjct: 238 FFLDVEDISGRRYMRGFYNDVARQQDLRKRFP-GCSSDMEPGQCFFPQEVAKGITTPMFI 296
Query: 265 LNAAYDSWQVRNILVPGFADPHGKWHSCKHDIDQCPASQLQILQGFRDDFLKALKEQGTP 324
LN AYD WQV ++L P +DP W C+ DI +C QL+ILQGFR L A+ E
Sbjct: 297 LNPAYDVWQVEHVLTPDGSDPQNLWQDCRMDITKCNTKQLEILQGFRKSLLDAISEFKKK 356
Query: 325 STRGLFINSCFVHCQSETQETWFASGSPMLETKTIADAVGDWFYDRNPFQKIDCPYPCDS 384
G+FI+SCF+HCQS W + + + KT+A+AVGDWF+DR ++IDC YPC+
Sbjct: 357 RGWGMFIDSCFIHCQSMKSLAWHSPSASRINNKTVAEAVGDWFFDRREVKEIDCEYPCNP 416
Query: 385 TCHNRIYDDPSE 396
TC N + + P +
Sbjct: 417 TCFNVVLEQPYQ 428
>Os01g0319000 Similar to Pectin acetylesterase (Fragment)
Length = 418
Score = 400 bits (1029), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/365 (52%), Positives = 237/365 (64%), Gaps = 3/365 (0%)
Query: 26 FVDITYVASAVAKGAVCLDGSPPAYHLARGFGSGVNSWLVHFEGGGWCSNVTTCLQRKRT 85
V IT + SAV KGAVC+DG+PPAYHL G G G SW+V+ EGGGWC+N TC R +
Sbjct: 57 MVPITILNSAVDKGAVCMDGTPPAYHLDPGSGGGNRSWVVNLEGGGWCNNARTCRFRTAS 116
Query: 86 RLGSSKQMAKQIAFSGILSNTPDYNPDFYNWNKVKVRYCDGSSFTGDVEKVDPATKLHYR 145
R GSS M ++IAF+GI+S+ NPDF++WN+VK+RYCD SF GD + KL +R
Sbjct: 117 RHGSSDHMERRIAFTGIMSSAAADNPDFHSWNRVKIRYCDSGSFAGDA--FNEGLKLQFR 174
Query: 146 GARVWQAVMDDLLAKGMNSANNALISGCSAGGLTSILHCDRFRDLFPVDTKVKCLSDAGF 205
G R+W AV+ LL GM SA + L++GCSAGGL +ILHCD+ R L P VKCLSD G
Sbjct: 175 GQRIWGAVIQHLLDVGMASAEHVLLTGCSAGGLAAILHCDQLRALLPAAATVKCLSDGGL 234
Query: 206 FINEKDIAGVEYIVAFFNGVATTHGSAKNLPSACTSRLSPGMCFFPQNEVKQIQTPLFIL 265
F++ D+AG + +++ V A NLP CT L CFFPQN + I+TP+F+L
Sbjct: 235 FLDAVDVAGGRSLRSYYGDVVGLQAVAPNLPETCTDHLDATSCFFPQNIIDGIKTPIFLL 294
Query: 266 NAAYDSWQVRNILVPGFADPHGKWHSCKHDIDQCPASQLQILQGFRDDFLKALKEQGTPS 325
NAAYD WQ+ L P AD G W CK + C ASQLQ LQGFRD + A++
Sbjct: 295 NAAYDVWQIEQSLAPNAADTSGTWRVCKFNRAACNASQLQFLQGFRDQMVAAVRVFSESR 354
Query: 326 TRGLFINSCFVHCQSETQETWFASGSPMLETKTIADAVGDWFYDRNPFQKIDCPYPCDST 385
+ GLFINSCF HCQSE TW GSP L+ K IA +VGDW++ R + IDCPYPCD T
Sbjct: 355 SNGLFINSCFAHCQSELTATW-NGGSPALQNKGIAKSVGDWYFGRAEVKAIDCPYPCDKT 413
Query: 386 CHNRI 390
CHN I
Sbjct: 414 CHNII 418
>Os01g0892600 Pectinacetylesterase family protein
Length = 396
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 172/375 (45%), Positives = 247/375 (65%), Gaps = 5/375 (1%)
Query: 18 VFLTVDGDFVDITYVASAVAKGAVCLDGSPPAYHLARGFGSGVNSWLVHFEGGGWCSNVT 77
V +VDG V++T + A KGAVCLDGSPP YHL RGFGSG +SW +H +GG WC+ +
Sbjct: 23 VARSVDG--VELTLLTGAREKGAVCLDGSPPGYHLQRGFGSGEHSWFIHLQGGAWCNTIE 80
Query: 78 TCLQRKRTRLGSSKQMAKQIAFSGILSNTPDYNPDFYNWNKVKVRYCDGSSFTGDVEKVD 137
C +RK + GSSK M + + F+GILSN N DFYNWN+V +RYCDG+SF+GD E D
Sbjct: 81 DCSKRKMSAYGSSKFM-RAVEFNGILSNDQQLNSDFYNWNRVFIRYCDGASFSGDGEAQD 139
Query: 138 P-ATKLHYRGARVWQAVMDDLLAKGMNSANNALISGCSAGGLTSILHCDRFRDLFPVDTK 196
+ LH+RG R+W+AV+++L+ KG+ +A A++SGCSAGGL ++LHC+ F F +
Sbjct: 140 QDGSTLHFRGLRIWEAVINELMGKGLATAKQAILSGCSAGGLAALLHCNDFYARFSKEVS 199
Query: 197 VKCLSDAGFFINEKDIAGVEYIVAFFNGVATTHGSAKNLPSACTSRLSPGMCFFPQNEVK 256
KCL DAGFF++ +D++G ++ + FNG + L C ++ P CFFP VK
Sbjct: 200 AKCLPDAGFFLDIEDLSGERHMWSVFNGTVHLQNVTQVLSKDCLAKKDPTECFFPAELVK 259
Query: 257 QIQTPLFILNAAYDSWQVRNILVPGFADPHGKWHSCKHDIDQCPASQLQILQGFRDDFLK 316
I P ILN+AYDSWQ++N L P + P W SCK DI C ++Q+Q+ GFR+ F+
Sbjct: 260 SITAPTLILNSAYDSWQIQNALAPDGSFPGQSWSSCKTDIRNCSSTQIQVFNGFRNKFVD 319
Query: 317 ALKEQGTPSTRGLFINSCFVHCQSETQETWFASGSPMLETKTIADAVGDWFYDRN-PFQK 375
++ GLFI+SCF HCQ+ +W + SP+L K +A+A+GDW+++R+ ++
Sbjct: 320 DIEVVKDKKDWGLFIDSCFTHCQTPFDISWNSQASPVLGNKIVAEAIGDWYFERSYEVKE 379
Query: 376 IDCPYPCDSTCHNRI 390
IDC YPC+ TC +++
Sbjct: 380 IDCEYPCNPTCSSQL 394
>Os10g0550500 Similar to Pectinacetylesterase
Length = 211
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/182 (53%), Positives = 127/182 (69%)
Query: 27 VDITYVASAVAKGAVCLDGSPPAYHLARGFGSGVNSWLVHFEGGGWCSNVTTCLQRKRTR 86
V +T + +A + GAVCLDGSPPAYHL RG G G W++ FEGGGWC++ +C +R TR
Sbjct: 29 VGMTLLQAATSTGAVCLDGSPPAYHLHRGSGGGAGGWVLQFEGGGWCNDAPSCAERAGTR 88
Query: 87 LGSSKQMAKQIAFSGILSNTPDYNPDFYNWNKVKVRYCDGSSFTGDVEKVDPATKLHYRG 146
GS++ M FSG+LSN PD NPDFYNWN+VK+RYCDG SF GD E + ++ L++RG
Sbjct: 89 RGSTRSMDSLEVFSGLLSNDPDMNPDFYNWNRVKLRYCDGGSFAGDSELRNGSSVLYFRG 148
Query: 147 ARVWQAVMDDLLAKGMNSANNALISGCSAGGLTSILHCDRFRDLFPVDTKVKCLSDAGFF 206
R+W A++ DLL KG+ A L+SGCSAGGL + HCD + VKCLSDAGFF
Sbjct: 149 QRIWDAIISDLLPKGLAKAQKVLLSGCSAGGLATFFHCDDLKGRLGDAVTVKCLSDAGFF 208
Query: 207 IN 208
++
Sbjct: 209 LD 210
>Os05g0111900 Similar to Pectinacetylesterase precursor
Length = 203
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 80/142 (56%), Positives = 104/142 (73%), Gaps = 1/142 (0%)
Query: 25 DFVDITYVASAVAKGAVCLDGSPPAYHLARGFGSGVNSWLVHFEGGGWCSNVTTCLQRKR 84
+ V +T V A KGAVCLDGS P YHL RG G+G +WL+H EGGGWC N+ +C R++
Sbjct: 40 NLVGLTLVRRAKEKGAVCLDGSAPGYHLQRGSGTGSQNWLLHLEGGGWCRNLRSCASRQK 99
Query: 85 TRLGSSKQMAKQIAFSGILSNTPDYNPDFYNWNKVKVRYCDGSSFTGDVE-KVDPATKLH 143
+ LGSS+ M QI F+GILSN NPDFYNWNKVK+RYCDG+SF+G+V+ ++ TK
Sbjct: 100 SVLGSSQYMECQIEFAGILSNDKFQNPDFYNWNKVKIRYCDGASFSGNVKNELQNGTKFF 159
Query: 144 YRGARVWQAVMDDLLAKGMNSA 165
+RG R+W+AVM +LL KG+ A
Sbjct: 160 FRGQRIWEAVMSELLLKGLRHA 181
>Os01g0892400 Pectinacetylesterase family protein
Length = 163
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/113 (61%), Positives = 82/113 (72%), Gaps = 1/113 (0%)
Query: 25 DFVDITYVASAVAKGAVCLDGSPPAYHLARGFGSGVNSWLVHFEGGGWCSNVTTCLQRKR 84
D V++T +A A KGAVCLDGSPP YHL RGFGSG +SWLV EGG WC+++ +C +RK
Sbjct: 41 DVVELTLLAGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLVFLEGGAWCNSIESCSRRKM 100
Query: 85 TRLGSSKQMAKQIAFSGILSNTPDYNPDFYNWNKVKVRYCDGSSFTGDVEKVD 137
GSSK M K F+GILSN N DFYNWNKV +RYCDG+SF+GD E D
Sbjct: 101 GVYGSSKFM-KAAEFNGILSNDQQLNSDFYNWNKVAIRYCDGASFSGDAEAQD 152
>Os01g0892500 Pectinacetylesterase family protein
Length = 119
Score = 105 bits (262), Expect = 6e-23, Method: Composition-based stats.
Identities = 49/86 (56%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Query: 25 DFVDITYVASAVAKGAVCLDGSPPAYHLARGFGSGVNSWLVHFEGGGWCSNVTTCLQRKR 84
D V++ + A KGAVCLDGSPP YHL RGFGSG +SWL++ EGG WC + +C RK
Sbjct: 30 DVVELILLTGAQEKGAVCLDGSPPGYHLQRGFGSGEHSWLIYLEGGEWCDTIESCSNRKT 89
Query: 85 TRLGSSKQMAKQIAFSGILSNTPDYN 110
T LGSSK M Q F GILSN N
Sbjct: 90 TELGSSKLMEAQ-EFEGILSNNQTVN 114
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,261,682
Number of extensions: 666232
Number of successful extensions: 1329
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1317
Number of HSP's successfully gapped: 10
Length of query: 397
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 294
Effective length of database: 11,657,759
Effective search space: 3427381146
Effective search space used: 3427381146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)