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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0319000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pectin acetylesterase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.96 (0.0479) R2 : 0.253
β1 : -2.11 (0.192) R2dD : 0.247 R2D : 0.0663
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.38 (0.254) R2dE : 0.0626 R2E : -0.0338
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.652 (0.104) R2dN8 : 0.0898 R2N8 : 0.0539
σ : 0.893
deviance : 367.5
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 50
memory length : 4489
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
353.23 0.883 3.96 -2.16 0.487 -1.7 -0.148 0.862 -0.636 9.46 49.43 4489 -- --
353.61 0.876 3.95 -2.11 0.484 -1.43 -0.156 -- -0.652 9.44 49.7 4489 -- --
353.31 0.875 3.96 -2.17 0.488 -1.71 -- 0.865 -0.636 9.42 49.42 4489 -- --
353.69 0.876 3.95 -2.12 0.487 -1.43 -- -- -0.649 9.37 49.71 4489 -- --
367.26 0.893 3.98 -2.15 -- -1.69 -- 0.835 -0.641 -- 49.36 4512 -- --
378.79 0.912 3.98 -1.66 0.457 -- -0.275 -- -0.766 9.23 -- -- -- --
379.05 0.912 3.98 -1.67 0.459 -- -- -- -0.767 9.11 -- -- -- --
367.5 0.893 3.96 -2.11 -- -1.38 -- -- -0.652 -- 50 4489 -- --
429.68 0.965 3.94 -- 0.463 -1.2 -- -- -0.59 10.2 65 8464 -- --
391.23 0.924 3.99 -1.67 -- -- -- -- -0.764 -- -- -- -- --
452.64 0.995 3.93 -- 0.459 -- -- -- -0.58 9.39 -- -- -- --
384.75 0.914 3.99 -- -- -1.79 -- -- -0.508 -- 55.01 30474 -- --
465 1.01 3.95 -- -- -- -- -- -0.579 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 351.43 wind 3 43200 > th dose independent rect. 1 2
2 352.22 wind 5 43200 < th dose dependent rect. 1 1
3 352.61 wind 3 43200 < th dose independent rect. 1 2
6 353.22 wind 9 43200 > th dose independent rect. 10 4
7 353.46 wind 9 43200 < th dose independent rect. 10 4
8 353.51 humidity 60 4320 > th dose independent rect. 17 18
10 353.96 wind 1 43200 > th dose dependent rect. 1 1
11 354.11 humidity 60 4320 < th dose dependent rect. 16 21
13 354.18 wind 9 43200 > th dose independent rect. 10 6
15 354.19 humidity 70 4320 < th dose dependent rect. 18 16
19 354.31 humidity 60 4320 < th dose independent rect. 16 19
22 354.53 humidity 60 4320 > th dose independent sin 10 NA
28 354.61 humidity 80 14400 < th dose dependent rect. 6 1
31 354.67 humidity 60 4320 > th dose independent rect. 10 1
33 354.73 radiation 30 43200 < th dose independent rect. 11 1
34 354.76 humidity 50 4320 > th dose independent rect. 16 22
35 354.85 humidity 60 4320 < th dose independent sin 10 NA
37 354.91 humidity 50 4320 > th dose independent rect. 11 6
39 354.94 radiation 30 43200 > th dose independent rect. 11 1
40 354.94 wind 9 43200 < th dose independent rect. 10 6
41 354.94 humidity 50 4320 > th dose independent rect. 24 17
42 354.96 humidity 50 4320 > th dose independent rect. 6 11
43 354.96 humidity 50 4320 > th dose independent rect. 2 15
46 354.97 humidity 50 4320 > th dose independent rect. 22 19
47 354.97 humidity 50 4320 > th dose independent rect. 19 22
59 355.05 humidity 60 4320 < th dose dependent sin 10 NA
62 355.11 humidity 50 4320 > th dose independent rect. 11 17
63 355.11 humidity 50 4320 < th dose independent rect. 15 23
65 355.12 humidity 50 4320 > th dose independent rect. 11 21
68 355.13 humidity 50 4320 > th dose independent rect. 11 12
72 355.14 humidity 50 4320 < th dose independent rect. 11 6
84 355.15 humidity 50 4320 < th dose independent rect. 13 23
107 355.16 humidity 50 4320 > th dose independent rect. 6 22
121 355.17 humidity 50 4320 > th dose independent rect. 24 23
125 355.18 humidity 50 4320 > th dose independent rect. 6 17
128 355.18 humidity 50 4320 > th dose independent rect. 24 20
133 355.18 humidity 70 4320 < th dose dependent rect. 9 2
163 355.21 humidity 50 4320 > th dose independent no NA NA
215 355.25 humidity 50 4320 > th dose independent sin 21 NA
244 355.30 humidity 50 4320 > th dose independent rect. 13 23
246 355.32 humidity 50 4320 < th dose independent sin 19 NA
283 355.35 humidity 50 4320 < th dose independent no NA NA
417 355.48 humidity 70 4320 < th dose independent rect. 19 15
428 355.61 humidity 80 14400 < th dose independent rect. 6 1
453 355.92 humidity 80 14400 > th dose independent rect. 6 1
461 356.06 humidity 50 4320 < th dose independent rect. 13 5
541 356.33 wind 9 43200 > th dose independent rect. 11 1
631 356.76 humidity 80 1440 < th dose independent rect. 8 2
640 356.84 humidity 60 4320 < th dose dependent rect. 9 10
655 356.85 humidity 60 4320 < th dose dependent no NA NA
749 356.89 humidity 90 14400 < th dose dependent rect. 3 1
772 357.00 radiation 20 43200 > th dose dependent rect. 11 1
794 357.06 humidity 60 4320 < th dose dependent sin 19 NA
796 357.08 humidity 70 4320 > th dose independent rect. 19 15
812 357.24 wind 7 43200 > th dose dependent rect. 11 2
813 357.25 wind 9 43200 < th dose independent rect. 15 1
841 357.32 humidity 60 4320 > th dose independent rect. 6 5
847 357.35 humidity 60 4320 > th dose independent rect. 24 11
848 357.36 humidity 60 4320 > th dose independent rect. 22 13
863 357.40 humidity 70 4320 < th dose independent rect. 6 5