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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0892400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pectinacetylesterase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.4 (0.034) R2 : 0.294
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.11 (0.154) R2dC : 0.892 R2C : -0.42
β3 : 2.62 (0.212) R2dE : 0.714 R2E : -0.601
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0481 (0.0711) R2dN8 : 0.000838 R2N8 : -0.00441
σ : 0.634
deviance : 185.57
__
_____
C
peak time of C : 18.8
E
wheather : temperature
threshold : 33.58
memory length : 296
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.08
open length of G : 6.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
184.95 0.639 7.38 0.149 2 2.55 0.678 0.498 -0.0155 18.7 31.95 278 1.16 6.42
185.03 0.634 7.38 0.146 2.03 2.54 0.345 -- -0.0158 18.7 32.63 277 1.18 6.43
185.18 0.634 7.39 0.153 2.04 2.56 -- -0.0297 -0.0244 18.8 33.26 292 1.2 6.21
185.17 0.634 7.39 0.143 2.06 2.58 -- -- -0.0276 18.8 33.18 292 1.2 6.23
249.25 0.735 7.33 0.134 -- 1.25 -- 0.443 0.0216 -- 24.1 138 2.65 6.53
244.22 0.733 7.36 0.111 0.563 -- 0.614 -- -0.0407 19.8 -- -- -- --
245.28 0.733 7.35 0.0958 0.565 -- -- -- -0.0395 19.7 -- -- -- --
249.04 0.735 7.32 0.145 -- 1.13 -- -- 0.0292 -- 24.17 142 2.2 6.9
185.57 0.634 7.4 -- 2.11 2.62 -- -- -0.0481 18.8 33.58 296 1.08 6.3
262.45 0.757 7.34 0.0881 -- -- -- -- -0.0479 -- -- -- -- --
245.53 0.733 7.36 -- 0.564 -- -- -- -0.0502 19.7 -- -- -- --
249.53 0.736 7.33 -- -- 1.12 -- -- 0.00343 -- 24.2 149 2.15 6.8
262.65 0.756 7.34 -- -- -- -- -- -0.0577 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 186.92 temperature 30.0 270 < th dose dependent rect. 1 6
6 191.87 temperature 30.0 270 < th dose dependent rect. 3 3
12 195.21 temperature 25.0 270 < th dose independent rect. 2 5
13 195.40 wind 9.0 270 < th dose independent rect. 3 16
14 195.81 wind 5.0 270 < th dose independent rect. 1 7
15 195.84 temperature 25.0 270 < th dose independent rect. 1 7
16 195.93 wind 5.0 270 < th dose independent rect. 2 5
17 195.95 precipitation 0.1 270 < th dose independent rect. 3 16
18 195.95 precipitation 0.1 270 < th dose dependent rect. 3 16
19 196.19 radiation 1.0 270 > th dose independent rect. 7 8
20 196.26 humidity 70.0 270 > th dose independent rect. 19 8
24 196.47 temperature 15.0 270 > th dose independent rect. 7 8
25 196.47 temperature 10.0 270 > th dose independent rect. 19 8
26 196.47 temperature 30.0 270 < th dose independent rect. 19 8
28 196.47 atmosphere 995.0 270 > th dose independent rect. 19 8
29 196.47 radiation 1.0 270 < th dose independent rect. 19 8
34 196.47 temperature 10.0 270 > th dose independent rect. 3 16
35 196.47 atmosphere 1015.0 270 < th dose independent rect. 3 16
36 196.47 radiation 1.0 270 < th dose dependent rect. 19 8
42 196.70 wind 9.0 270 < th dose independent rect. 19 8
45 197.32 wind 9.0 270 < th dose independent rect. 15 16
47 197.47 precipitation 0.1 270 < th dose independent rect. 1 7
48 197.47 precipitation 0.1 270 < th dose dependent rect. 1 7
51 197.58 precipitation 0.1 270 < th dose independent rect. 15 16
52 197.58 precipitation 0.1 270 < th dose dependent rect. 15 16
53 197.61 precipitation 0.1 270 < th dose independent rect. 19 8
54 197.61 precipitation 0.1 270 < th dose dependent rect. 19 8
55 197.62 wind 5.0 270 < th dose independent rect. 3 3
56 197.63 precipitation 0.1 270 < th dose independent rect. 7 8
57 197.63 precipitation 0.1 270 < th dose dependent rect. 7 8
63 197.93 precipitation 0.1 270 < th dose independent rect. 2 5
64 197.93 precipitation 0.1 270 < th dose dependent rect. 2 5
67 198.14 atmosphere 1015.0 270 < th dose independent rect. 7 8
68 198.14 temperature 10.0 270 > th dose independent rect. 15 16
71 198.23 radiation 40.0 270 < th dose independent rect. 15 16
93 198.57 humidity 50.0 270 > th dose dependent rect. 19 7
96 198.79 temperature 10.0 270 > th dose independent rect. 1 7
99 198.79 humidity 50.0 270 > th dose independent rect. 1 7
101 198.79 atmosphere 995.0 270 > th dose independent rect. 1 7
102 198.79 atmosphere 1015.0 270 < th dose independent rect. 1 7
103 198.79 temperature 10.0 270 > th dose independent rect. 8 17
104 198.83 radiation 40.0 270 < th dose independent rect. 1 7
110 199.09 wind 9.0 270 < th dose independent rect. 7 8
112 199.20 precipitation 0.1 270 < th dose independent rect. 3 3
114 199.20 temperature 10.0 270 > th dose independent rect. 2 5
117 199.20 humidity 50.0 270 > th dose independent rect. 2 5
119 199.20 atmosphere 995.0 270 > th dose independent rect. 2 5
120 199.20 atmosphere 1015.0 270 < th dose independent rect. 2 5
121 199.20 radiation 40.0 270 < th dose independent rect. 2 5
122 199.20 temperature 10.0 270 > th dose independent rect. 7 19
123 199.20 precipitation 0.1 270 < th dose dependent rect. 3 3
126 199.26 precipitation 0.1 270 < th dose independent rect. 8 17
127 199.26 precipitation 0.1 270 < th dose dependent rect. 8 17
129 199.27 atmosphere 995.0 270 > th dose independent rect. 7 8
137 199.50 radiation 40.0 270 < th dose dependent rect. 2 5
138 199.54 precipitation 0.1 270 < th dose independent rect. 7 19
139 199.54 precipitation 0.1 270 < th dose dependent rect. 7 19
161 200.00 wind 9.0 270 < th dose dependent rect. 2 5
168 200.15 wind 1.0 270 > th dose independent rect. 19 8
183 200.57 temperature 10.0 270 > th dose dependent rect. 20 16
188 200.62 wind 9.0 270 < th dose independent rect. 8 17
197 200.74 temperature 10.0 270 > th dose independent rect. 3 3
200 200.74 humidity 50.0 270 > th dose independent rect. 3 3
203 200.74 atmosphere 995.0 270 > th dose independent rect. 3 3
204 200.74 atmosphere 1015.0 270 < th dose independent rect. 3 3
205 200.74 radiation 20.0 270 < th dose independent rect. 3 3
208 200.74 temperature 10.0 270 > th dose independent rect. 6 21
210 200.78 wind 1.0 270 > th dose independent rect. 3 16
221 200.88 wind 1.0 270 > th dose independent rect. 12 8
227 200.98 wind 9.0 270 < th dose independent rect. 7 19
255 201.28 precipitation 0.1 270 < th dose independent rect. 6 21
256 201.28 precipitation 0.1 270 < th dose dependent rect. 6 21
275 201.45 atmosphere 995.0 270 > th dose independent rect. 3 16
278 201.49 wind 9.0 270 < th dose dependent rect. 3 3
279 201.57 wind 9.0 270 < th dose independent rect. 12 8
281 201.58 wind 1.0 270 > th dose independent rect. 3 3
319 202.03 radiation 1.0 30 < th dose independent rect. 20 10
353 202.27 atmosphere 995.0 270 > th dose independent rect. 15 16
375 202.51 temperature 15.0 270 > th dose independent rect. 12 8
382 202.63 atmosphere 1015.0 270 < th dose independent rect. 12 8
383 202.63 temperature 10.0 270 > th dose independent rect. 20 16
384 202.63 atmosphere 995.0 270 > th dose independent rect. 20 16
389 202.69 atmosphere 995.0 270 > th dose independent rect. 7 19
404 202.85 atmosphere 995.0 270 > th dose independent rect. 8 17
411 202.94 wind 9.0 270 < th dose independent rect. 20 16
419 203.11 wind 9.0 270 < th dose independent rect. 6 21
445 203.39 precipitation 0.1 270 < th dose independent rect. 12 8
446 203.39 precipitation 0.1 270 < th dose dependent rect. 12 8
466 203.56 humidity 50.0 270 > th dose dependent rect. 2 5
494 204.01 precipitation 0.1 270 < th dose independent rect. 20 16
495 204.01 precipitation 0.1 270 < th dose dependent rect. 20 16
530 204.13 radiation 1.0 30 < th dose dependent rect. 20 10
544 204.36 humidity 50.0 270 > th dose dependent rect. 3 3
567 204.42 atmosphere 1015.0 270 < th dose independent rect. 14 17
572 204.47 wind 1.0 30 > th dose independent rect. 5 15
600 204.69 wind 9.0 270 < th dose dependent rect. 19 7
617 204.83 humidity 50.0 270 > th dose independent rect. 7 19
626 204.98 humidity 90.0 90 < th dose independent rect. 9 7
648 205.19 humidity 50.0 270 > th dose independent rect. 20 16
649 205.19 wind 9.0 270 < th dose dependent rect. 7 8
655 205.33 humidity 50.0 270 > th dose independent rect. 7 7
663 205.39 atmosphere 995.0 270 > th dose independent rect. 6 21
672 205.49 wind 1.0 270 > th dose independent rect. 1 7
673 205.49 wind 1.0 270 > th dose independent rect. 7 7
674 205.49 temperature 30.0 10 < th dose independent rect. 3 7
681 205.53 atmosphere 995.0 270 > th dose independent rect. 12 8
687 205.58 wind 9.0 30 < th dose independent rect. 5 15
711 205.78 radiation 1.0 270 < th dose independent rect. 3 11
714 205.81 humidity 50.0 270 > th dose independent rect. 8 17
715 205.81 temperature 10.0 270 > th dose dependent rect. 20 6
750 206.08 wind 5.0 10 < th dose independent rect. 3 6
754 206.11 temperature 10.0 30 > th dose independent rect. 20 9
755 206.11 temperature 30.0 30 < th dose independent rect. 20 9
756 206.11 humidity 50.0 30 > th dose independent rect. 20 9
759 206.11 atmosphere 995.0 30 > th dose independent rect. 20 9
765 206.11 temperature 10.0 30 > th dose independent rect. 5 15
767 206.11 atmosphere 1015.0 30 < th dose independent rect. 5 15
768 206.11 radiation 40.0 30 < th dose dependent rect. 20 9
788 206.28 wind 9.0 30 < th dose independent rect. 20 9
790 206.30 radiation 1.0 270 < th dose dependent rect. 3 11
803 206.39 wind 9.0 270 < th dose dependent rect. 7 19
815 206.45 precipitation 0.1 30 < th dose independent rect. 5 15
824 206.45 precipitation 0.1 30 < th dose dependent rect. 5 15
859 206.56 humidity 50.0 270 > th dose independent rect. 6 21
874 206.63 wind 9.0 270 < th dose dependent rect. 8 17
886 206.65 radiation 20.0 30 < th dose dependent rect. 5 15
898 206.76 atmosphere 995.0 30 > th dose independent rect. 5 15
907 206.79 atmosphere 1015.0 270 < th dose dependent rect. 3 3
912 206.83 temperature 10.0 270 > th dose dependent rect. 7 7
929 206.94 atmosphere 1015.0 270 < th dose dependent rect. 2 5
935 206.97 precipitation 0.1 10 < th dose independent rect. 3 7
942 206.97 precipitation 0.1 10 < th dose dependent rect. 3 7
944 206.98 radiation 40.0 90 < th dose dependent rect. 15 18
990 207.20 humidity 50.0 30 > th dose dependent rect. 20 9