Os04g0602500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectin acetylesterase.
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Os04g0602500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectin acetylesterase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 346.22 | 0.874 | 5.78 | -1.78 | 2.84 | 2.14 | -1.89 | 1.39 | -0.46 | 9.8 | 107.7 | 1443 | 11.3 | 0.79 |
| 349.03 | 0.87 | 5.79 | -1.84 | 2.82 | 2.25 | -1.85 | -- | -0.476 | 9.74 | 119.2 | 1444 | 11.3 | 0.815 |
| 359.73 | 0.883 | 5.78 | -1.88 | 2.84 | 2.19 | -- | 1.11 | -0.46 | 9.76 | 116.2 | 1443 | 11.3 | 0.815 |
| 361.54 | 0.886 | 5.79 | -1.92 | 2.81 | 2.23 | -- | -- | -0.474 | 9.75 | 122.6 | 1444 | 11.3 | 0.876 |
| 744 | 1.27 | 5.87 | -1.78 | -- | 2.93 | -- | 1.47 | -0.451 | -- | 108.3 | 1584 | 11.3 | 0.541 |
| 423.43 | 0.965 | 5.82 | -1.4 | 2.89 | -- | -1.96 | -- | -0.553 | 9.8 | -- | -- | -- | -- |
| 438.03 | 0.98 | 5.82 | -1.47 | 2.9 | -- | -- | -- | -0.557 | 9.76 | -- | -- | -- | -- |
| 724.78 | 1.25 | 5.85 | -1.8 | -- | 3.94 | -- | -- | -0.299 | -- | 108.5 | 1583 | 11.3 | 0.549 |
| 453.25 | 0.992 | 5.78 | -- | 2.76 | 1.6 | -- | -- | -0.28 | 9.76 | 152.3 | 1447 | 11.3 | 1.23 |
| 938.11 | 1.43 | 5.9 | -1.5 | -- | -- | -- | -- | -0.555 | -- | -- | -- | -- | -- |
| 495.14 | 1.04 | 5.78 | -- | 2.9 | -- | -- | -- | -0.394 | 9.8 | -- | -- | -- | -- |
| 806.2 | 1.32 | 5.82 | -- | -- | 3.42 | -- | -- | -0.131 | -- | 119.6 | 1583 | 11.4 | 0.517 |
| 997.45 | 1.47 | 5.86 | -- | -- | -- | -- | -- | -0.388 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 351.35 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 2 | 352.18 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 3 | 352.33 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 4 | 352.82 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 8 | 354.04 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 12 | 354.70 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 19 | 355.93 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 21 | 356.06 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 5 | 10 |
| 25 | 356.13 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 27 | 356.17 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 33 | 356.35 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 40 | 356.61 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 41 | 356.61 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 47 | 356.82 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 50 | 357.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 51 | 357.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 4 |
| 54 | 357.08 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 4 |
| 69 | 357.73 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 76 | 357.94 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 3 | NA |
| 103 | 358.39 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 106 | 358.42 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 5 |
| 140 | 358.81 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 5 | 10 |
| 206 | 359.61 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 308 | 361.05 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 393 | 361.96 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 400 | 362.03 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 410 | 362.09 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 489 | 362.83 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 498 | 362.89 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 22 | NA |
| 514 | 362.98 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 588 | 363.53 | humidity | 80.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 668 | 364.09 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 686 | 364.17 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 15 | 21 |
| 758 | 364.75 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 793 | 365.04 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 12 |
| 819 | 365.18 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 902 | 365.72 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 21 | NA |
| 936 | 365.85 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 21 | NA |
| 937 | 365.85 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 21 | NA |
| 954 | 365.95 | wind | 1.0 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 972 | 366.00 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 13 |
| 979 | 366.02 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 10 | NA |