Os10g0550500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectinacetylesterase.
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Os10g0550500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectinacetylesterase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 157.1 | 0.589 | 5.2 | -0.693 | 2.41 | -3.02 | -1.01 | -2.65 | 0.118 | 21.9 | 25.27 | 4366 | -- | -- |
| 155.18 | 0.58 | 5.26 | -0.823 | 2.32 | -2.47 | -1.05 | -- | 0.13 | 21.7 | 31.27 | 2698 | -- | -- |
| 160.98 | 0.591 | 5.2 | -0.659 | 2.41 | -3.01 | -- | -2.62 | 0.12 | 21.9 | 25.31 | 4381 | -- | -- |
| 159.04 | 0.587 | 5.26 | -0.82 | 2.32 | -2.48 | -- | -- | 0.127 | 21.7 | 31.2 | 2700 | -- | -- |
| 427.19 | 0.963 | 5.22 | -0.965 | -- | -3.32 | -- | -0.116 | 0.03 | -- | 46.88 | 2231 | -- | -- |
| 279.1 | 0.783 | 5.14 | 0.153 | 2.43 | -- | -0.946 | -- | 0.68 | 22 | -- | -- | -- | -- |
| 282.61 | 0.787 | 5.14 | 0.19 | 2.43 | -- | -- | -- | 0.682 | 22 | -- | -- | -- | -- |
| 349.67 | 0.871 | 5.22 | -0.891 | -- | -4.29 | -- | -- | 0.0235 | -- | 70.42 | 777 | -- | -- |
| 173.01 | 0.613 | 5.22 | -- | 2.29 | -2.15 | -- | -- | 0.315 | 21.7 | 37.56 | 2595 | -- | -- |
| 639.66 | 1.18 | 5.07 | 0.22 | -- | -- | -- | -- | 0.684 | -- | -- | -- | -- | -- |
| 283.56 | 0.788 | 5.14 | -- | 2.44 | -- | -- | -- | 0.661 | 22 | -- | -- | -- | -- |
| 368.42 | 0.894 | 5.19 | -- | -- | -3.94 | -- | -- | 0.166 | -- | 72.27 | 768 | -- | -- |
| 640.94 | 1.18 | 5.08 | -- | -- | -- | -- | -- | 0.66 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 152.58 | temperature | 15 | 4320 | > th | dose dependent | rect. | 2 | 7 |
| 6 | 153.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 9 | 153.34 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 10 | 153.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 24 | 153.75 | temperature | 30 | 4320 | < th | dose dependent | rect. | 2 | 7 |
| 63 | 154.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 66 | 154.38 | temperature | 15 | 4320 | > th | dose dependent | sin | 9 | NA |
| 128 | 154.80 | temperature | 25 | 4320 | < th | dose dependent | sin | 7 | NA |
| 378 | 155.94 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 728 | 157.14 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 762 | 157.24 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 779 | 157.28 | temperature | 25 | 4320 | < th | dose dependent | rect. | 24 | 23 |
| 815 | 157.40 | temperature | 25 | 4320 | < th | dose dependent | rect. | 2 | 23 |
| 876 | 157.56 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 896 | 157.61 | temperature | 25 | 4320 | < th | dose dependent | rect. | 4 | 23 |