BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0513600 Os07g0513600|Os07g0513600
(526 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0513600 HSP40/DnaJ peptide-binding domain containing p... 998 0.0
Os02g0128400 Heat shock protein DnaJ, N-terminal domain con... 192 6e-49
Os08g0374400 Similar to DnaJ-like protein 138 9e-33
Os05g0562300 Similar to DnaJ-like protein 137 2e-32
Os02g0306900 Similar to DnaJ-like protein 131 2e-30
Os05g0127400 Similar to DnaJ homolog subfamily B member 1 (... 117 3e-26
Os01g0239100 Heat shock protein DnaJ family protein 111 1e-24
Os01g0875700 Heat shock protein DnaJ family protein 104 2e-22
Os03g0787300 Similar to DnaJ homolog 72 9e-13
AK108884 70 3e-12
>Os07g0513600 HSP40/DnaJ peptide-binding domain containing protein
Length = 526
Score = 998 bits (2581), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/526 (92%), Positives = 485/526 (92%)
Query: 1 MAGQRRSGPNVGYTAHGDAXXXXXXXXXXXXXSFVYEQKLREGRTXXXXXXXXXXXXXXX 60
MAGQRRSGPNVGYTAHGDA SFVYEQKLREGRT
Sbjct: 1 MAGQRRSGPNVGYTAHGDAFLLRVLLLERRFFSFVYEQKLREGRTGRFSRRAAPGRGRRD 60
Query: 61 XSHAELRLVSSMLSQGYDIMKDDIGTSYGDLPDHKYFISVREFTTSAMEYIDSTRCSLLG 120
SHAELRLVSSMLSQGYDIMKDDIGTSYGDLPDHKYFISVREFTTSAMEYIDSTRCSLLG
Sbjct: 61 ASHAELRLVSSMLSQGYDIMKDDIGTSYGDLPDHKYFISVREFTTSAMEYIDSTRCSLLG 120
Query: 121 EYKKLNVWIVKERIKCCVRSMAVELFNQHEEGNYSMDQIPEDWRSLMSLMLHNPHEHGYL 180
EYKKLNVWIVKERIKCCVRSMAVELFNQHEEGNYSMDQIPEDWRSLMSLMLHNPHEHGYL
Sbjct: 121 EYKKLNVWIVKERIKCCVRSMAVELFNQHEEGNYSMDQIPEDWRSLMSLMLHNPHEHGYL 180
Query: 181 ICNYAPLIPIENRILFYFKAYEHMRFVLAYTNDAAYRDILKKLPYQNRWFQITEGNYLLE 240
ICNYAPLIPIENRILFYFKAYEHMRFVLAYTNDAAYRDILKKLPYQNRWFQITEGNYLLE
Sbjct: 181 ICNYAPLIPIENRILFYFKAYEHMRFVLAYTNDAAYRDILKKLPYQNRWFQITEGNYLLE 240
Query: 241 ASLKHKNYGVDDNPEKAHDPETFFKYYRHSNCHRLDRCFMIEEVGGYSAEQFELIFIVKY 300
ASLKHKNYGVDDNPEKAHDPETFFKYYRHSNCHRLDRCFMIEEVGGYSAEQFELIFIVKY
Sbjct: 241 ASLKHKNYGVDDNPEKAHDPETFFKYYRHSNCHRLDRCFMIEEVGGYSAEQFELIFIVKY 300
Query: 301 XXXXXXXXXXXXRYNQLRCLKPHTLFFYGNIQDAEQSCAMIYHDQLDNPQATVGELMCTL 360
RYNQLRCLKPHTLFFYGNIQDAEQSCAMIYHDQLDNPQATVGELMCTL
Sbjct: 301 PLFLPLLQQELQRYNQLRCLKPHTLFFYGNIQDAEQSCAMIYHDQLDNPQATVGELMCTL 360
Query: 361 EELYQGTDLTVALHRRITRHTDEPVENEEIILQVKVLPGSRKGTKITLPYEGSHFYGQPP 420
EELYQGTDLTVALHRRITRHTDEPVENEEIILQVKVLPGSRKGTKITLPYEGSHFYGQPP
Sbjct: 361 EELYQGTDLTVALHRRITRHTDEPVENEEIILQVKVLPGSRKGTKITLPYEGSHFYGQPP 420
Query: 421 HDLILTLDIAPHETYILYGNDLVVHWVLRLVDALAKCTINLKTLDGRYLKIKVDEVVYPG 480
HDLILTLDIAPHETYILYGNDLVVHWVLRLVDALAKCTINLKTLDGRYLKIKVDEVVYPG
Sbjct: 421 HDLILTLDIAPHETYILYGNDLVVHWVLRLVDALAKCTINLKTLDGRYLKIKVDEVVYPG 480
Query: 481 YELVIKDEGWPIGEGLKGNLRIIFDVSFPKTLSGRQQHSIRQVLDQ 526
YELVIKDEGWPIGEGLKGNLRIIFDVSFPKTLSGRQQHSIRQVLDQ
Sbjct: 481 YELVIKDEGWPIGEGLKGNLRIIFDVSFPKTLSGRQQHSIRQVLDQ 526
>Os02g0128400 Heat shock protein DnaJ, N-terminal domain containing protein
Length = 339
Score = 192 bits (487), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 139/218 (63%), Gaps = 8/218 (3%)
Query: 314 YNQLRC-LKPHTLFFYGNIQDAEQSCA----MIYHDQLDNPQATVGELMCTLEELYQGTD 368
++Q R +P + + GN + S + QL+ P A L+CTLEELY GT
Sbjct: 121 FDQERTRFQPRSQWTAGNTRGEASSASHKESSTSTSQLEKPPAIEKTLLCTLEELYNGTK 180
Query: 369 LTVALHRRITRHTDEPVENEEIILQVKVLPGSRKGTKITLPYEGSHFYGQPPHDLILTLD 428
+ + R + +TD VE E +L V+VLPG +KGTKIT P +G GQ P DL +D
Sbjct: 181 RKMKITRNVA-NTDGKVEIETEVLPVEVLPGWKKGTKITFPNKGDRLSGQLPQDLTFVID 239
Query: 429 IAPHETYILYGNDLVVHWVLRLVDALAKCTINLKTLDGRYLKIKVDEVVYPGYELVIKDE 488
+ PH+ Y+L GN+LV V+ LVDALA TI+LKTLDGR L I+V+EVV PG+E+V+ +E
Sbjct: 240 LKPHDVYLLEGNNLVATQVIPLVDALAGTTIHLKTLDGRNLPIRVEEVVRPGHEIVLANE 299
Query: 489 GWPIGE--GLKGNLRIIFDVSFPKTLSGRQQHSIRQVL 524
GWPI + G KGNL+I FDV+FP LS Q+ +IRQ++
Sbjct: 300 GWPIRKEPGKKGNLKIKFDVTFPTRLSSSQRAAIRQIM 337
>Os08g0374400 Similar to DnaJ-like protein
Length = 344
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 108/195 (55%), Gaps = 18/195 (9%)
Query: 348 NPQATVGELMCTLEELYQGTDLTVALHRRITRHTDEPVENEEIILQVKVLPGSRKGTKIT 407
P +L CTLEELY G + + R + + ++ E IL ++V PG +KGTKIT
Sbjct: 148 QPPPVESKLACTLEELYVGVTKNMKISRNVVDASGR-MKTESEILSIEVKPGWKKGTKIT 206
Query: 408 LPYEGSHFYGQPPHDLILTLDIAPHETYILYGNDLVVHWVLRLVDALAKCTINLKTLDGR 467
P +G+ + Q P DL+ +D PH+ Y GNDLV + L DAL + L TLDGR
Sbjct: 207 FPGKGNQQWSQLPADLVFVVDEKPHDVYRRDGNDLVAEARVTLADALGGTVVVLATLDGR 266
Query: 468 YLKIKVD---------------EVVYPGYELVIKDEGWPIGE--GLKGNLRIIFDVSFPK 510
L ++V VVYPGYELV+ EG PI G G+LRI FDV+FP+
Sbjct: 267 ELLVEVSGGGVAAGDEDDDDEDPVVYPGYELVVPSEGMPIAREPGRHGSLRIRFDVAFPE 326
Query: 511 TLSGRQQHSIRQVLD 525
L+ RQ+ I+++LD
Sbjct: 327 RLTRRQRAQIKRILD 341
>Os05g0562300 Similar to DnaJ-like protein
Length = 362
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 105/174 (60%), Gaps = 3/174 (1%)
Query: 355 ELMCTLEELYQGTDLTVALHRRITRHTDEPVENEEIILQVKVLPGSRKGTKITLPYEGSH 414
+L C+LEELY+GT + + R I + + + EEI L + V PG +KGTKIT P +G+
Sbjct: 190 KLPCSLEELYKGTTKKMKISREIADASGKTIPVEEI-LTIDVKPGWKKGTKITFPEKGNE 248
Query: 415 FYGQPPHDLILTLDIAPHETYILYGNDLVVHWVLRLVDALAKCTINLKTLDGRYLKIKVD 474
P DL+ +D PH + GNDLVV + L +AL T++L TLDGR L I +
Sbjct: 249 QPNVIPADLVFIIDEKPHPVFTRDGNDLVVTQKIPLAEALTGHTVHLTTLDGRSLTIPIT 308
Query: 475 EVVYPGYELVIKDEGWPIGE--GLKGNLRIIFDVSFPKTLSGRQQHSIRQVLDQ 526
V+ PGYE V++ EG PI + KGNLR+ FD+ FP L+ Q+ ++++L Q
Sbjct: 309 SVINPGYEEVVRGEGMPIPKDPSKKGNLRVKFDIKFPARLTADQKSGVKRLLGQ 362
>Os02g0306900 Similar to DnaJ-like protein
Length = 349
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
Query: 356 LMCTLEELYQGTDLTVALHRRITRHTDEPVENEEIILQVKVLPGSRKGTKITLPYEGSHF 415
L C L +LY+GT + + R I + + EEI L + + PG +KGTKIT P +G+
Sbjct: 178 LPCNLADLYKGTTKKMKISREILDSSGRTMVVEEI-LTIDIKPGWKKGTKITFPEKGNES 236
Query: 416 YGQPPHDLILTLDIAPHETYILYGNDLVVHWVLRLVDALAKCTINLKTLDGRYLKIKVDE 475
P D++ +D PH+ + GNDLV+ + L +AL CT+ + LDGR L + ++
Sbjct: 237 PHVIPADIVFVIDEKPHDLFTREGNDLVMTQKISLAEALTGCTVQVTALDGRNLTVPINN 296
Query: 476 VVYPGYELVIKDEGWPIGE--GLKGNLRIIFDVSFPKTLSGRQQHSIRQVL 524
VVYPGYE V+ EG PI + KGNLRI F++ FP L+ Q+ I+++L
Sbjct: 297 VVYPGYEEVVLREGMPIPKDPSKKGNLRIKFNIKFPSRLTSEQKSEIKRLL 347
>Os05g0127400 Similar to DnaJ homolog subfamily B member 1 (Heat shock 40 kDa
protein 1) (Heat shock protein 40) (HSP40) (DnaJ protein
homolog 1) (HDJ-1)
Length = 331
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
Query: 355 ELMCTLEELYQGTDLTVALHRRITRHTDEPVENEEIILQVKVLPGSRKGTKITLPYEGSH 414
+L C+LE+LY+G + + R + T +P EEI L + + PG +KGTK+T P +G+
Sbjct: 158 QLACSLEDLYRGATKKMKISRDVLDATGKPTNLEEI-LTIDIKPGWKKGTKVTFPKKGNE 216
Query: 415 FYGQPPHDLILTLDIAPHETYILYGNDLVVHWVLRLVDALAKCTINLKTLDGRYLKIKVD 474
P DL+ ++ H + +DL+ + LV+AL CT+ L TLDGR L + V
Sbjct: 217 KPNIIPSDLVFIIEERSHARFKRDKDDLIYTHRISLVEALTGCTVQLTTLDGRNLTVPVK 276
Query: 475 EVVYPGYELVIKDEGWPIGE--GLKGNLRIIFDVSFPKTLSGRQQHSIRQVLDQ 526
V+ P E V+K EG PI + KG+L+I F + FP L+ Q+ I+Q+L +
Sbjct: 277 SVINPTSEEVVKGEGMPITKEPSKKGDLKIRFQIKFPTNLTSDQKSGIQQLLPK 330
>Os01g0239100 Heat shock protein DnaJ family protein
Length = 349
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 98/182 (53%), Gaps = 3/182 (1%)
Query: 345 QLDNPQATVGELMCTLEELYQGTDLTVALHRRITRHTDEPVENEEIILQVKVLPGSRKGT 404
QL P L +L +LY+G + + R I V +E ILQ++V PG ++GT
Sbjct: 167 QLAKPPPIENRLPVSLADLYKGVTKKMKISREIIDFNGR-VSQQEEILQIEVKPGWKRGT 225
Query: 405 KITLPYEGSHFYGQPPHDLILTLDIAPHETYILYGNDLVVHWVLRLVDALAKCTINLKTL 464
KIT +G+ P D++ ++ PH+ + GNDLV+ + LV+AL T + TL
Sbjct: 226 KITFEEKGNQAPNMKPADIVFIIEEKPHDIFTREGNDLVITEKISLVEALTGYTARIITL 285
Query: 465 DGRYLKIKVDEVVYPGYELVIKDEGW--PIGEGLKGNLRIIFDVSFPKTLSGRQQHSIRQ 522
D R L + ++ V++P Y V+ EG P G KG+L+I F++ FP L+ Q+ ++
Sbjct: 286 DARSLSVPINSVIHPDYVEVVPGEGMPNPKGPNKKGDLKIKFNIRFPSRLTSDQKAGFKR 345
Query: 523 VL 524
+L
Sbjct: 346 LL 347
>Os01g0875700 Heat shock protein DnaJ family protein
Length = 327
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Query: 355 ELMCTLEELYQGTDLTVALHRRITRHTDEPVENEEIILQVKVLPGSRKGTKITLPYEGSH 414
+L CTLEEL G V R + V+ +E+ V V PG +KG KIT G
Sbjct: 150 KLDCTLEELCHGCKKEVKFTRDVVTKNGSIVK-KEVSQMVLVKPGWKKGNKITFEGMGDE 208
Query: 415 FYGQPPHDLILTLDIAPHETYILYGNDLVVHWVLRLVDALAKCTINLKTLDGRYLKIKV- 473
G P D + + H + GNDLV+ + LV AL + + + L G+ +
Sbjct: 209 RPGCLPADAVFVISEKKHPVFKRVGNDLVLKAEVPLVSALTGWSFSFRLLSGKKVSCSFQ 268
Query: 474 DEVVYPGYELVIKDEGWPIGE--GLKGNLRIIFDVSFPKTLSGRQQHSIRQVL 524
DE++ PGYE +IK EG PI + G +G+LR+ F+++FPK L+ Q+ + Q+L
Sbjct: 269 DEIICPGYEKIIKGEGMPIADQKGARGDLRVKFEIAFPKQLTDEQRDGLAQIL 321
>Os03g0787300 Similar to DnaJ homolog
Length = 417
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
Query: 365 QGTDLTVALHRRITRHTDEPVENEEIILQVKVLPGSRKGTKITLPYEGSHFYGQPPHDLI 424
+GT T++ R E V E+ +L+V V G + G KIT P E D+I
Sbjct: 193 KGTGETISDKDRCPGCKGEKVAQEKKVLEVVVEKGMQNGQKITFPGEADEAPDTVTGDII 252
Query: 425 LTLDIAPHETYILYGNDLVVHWVLRLVDALAKCTINLKTLDGRYL--KIKVDEVVYPGYE 482
L H + G+DL L L +AL L LD R L K K EVV P
Sbjct: 253 FVLQQKEHPKFKRKGDDLFYEHTLNLTEALCGFQFVLTHLDNRQLLIKSKPGEVVKPDSF 312
Query: 483 LVIKDEGWPIGEG--LKGNLRIIFDVSFPKTLSGRQQHSIRQVL 524
+ DEG P+ + +KG L I F V FP +L+ Q ++ VL
Sbjct: 313 KAVNDEGMPMYQRPFMKGKLYIHFSVEFPDSLNPDQCKALETVL 356
>AK108884
Length = 424
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 6/167 (3%)
Query: 365 QGTDLTVALHRRITRHTDEPVENEEIILQVKVLPGSRKGTKITLPYEGSHFYGQPPHDLI 424
QG+ + +R + V + +L++ + G+R+G +I L E Q P D+I
Sbjct: 200 QGSGQVIPEKQRCKKCKGNKVVEAKNVLELYIPRGAREGERIVLAGEADQLPDQEPGDII 259
Query: 425 LTLDIAPHETYILYGNDLVVHWVLRLVDALAKCT-INLKTLDGRYLKIKVDE----VVYP 479
TL HET+ G DL + LV+AL + L LDGR +++ V + V+ P
Sbjct: 260 FTLKETEHETFERAGADLRAELKISLVEALTGFNRVVLTHLDGRGIQLNVQQPNGKVLRP 319
Query: 480 GYELVIKDEGWPIGEG-LKGNLRIIFDVSFPKTLSGRQQHSIRQVLD 525
G L ++ EG P+ KG+L ++ D+ FP+ + +++++ D
Sbjct: 320 GQVLKVEGEGMPMKRSDAKGDLYLVVDIEFPEDGWLKNDAAVQKIKD 366
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,846,304
Number of extensions: 667054
Number of successful extensions: 1259
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1247
Number of HSP's successfully gapped: 10
Length of query: 526
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 421
Effective length of database: 11,553,331
Effective search space: 4863952351
Effective search space used: 4863952351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)