BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0507700 Os07g0507700|AK102283
(484 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0507700 Bromodomain containing protein 782 0.0
AK105395 508 e-144
Os02g0601800 Bromodomain containing protein 139 6e-33
Os02g0250300 Bromodomain containing protein 136 3e-32
Os01g0648700 Bromodomain containing protein 106 4e-23
AK111203 102 6e-22
Os04g0623100 Bromodomain containing protein 94 2e-19
Os04g0622700 Bromodomain containing protein 93 4e-19
Os08g0192800 Bromodomain containing protein 91 2e-18
AK110437 82 8e-16
Os06g0355500 Bromodomain containing protein 77 3e-14
Os08g0109500 Bromodomain containing protein 76 5e-14
Os10g0415900 Similar to General control of amino-acid synth... 70 3e-12
>Os07g0507700 Bromodomain containing protein
Length = 484
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/484 (81%), Positives = 393/484 (81%)
Query: 1 MTTQACKKRRAVYIXXXXXXXXXXXXXXXXKLSKKDGVTSVYTCGHQPTSKNKVDPMNTS 60
MTTQACKKRRAVYI KLSKKDGVTSVYTCGHQPTSKNKVDPMNTS
Sbjct: 1 MTTQACKKRRAVYISSESEDSGTDSEVEGSKLSKKDGVTSVYTCGHQPTSKNKVDPMNTS 60
Query: 61 KSRQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNP 120
KSRQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNP
Sbjct: 61 KSRQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNP 120
Query: 121 YEFAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWKLLERKWKDRNLVQEQPSLKV 180
YEFAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWKLLERKWKDRNLVQEQPSLKV
Sbjct: 121 YEFAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWKLLERKWKDRNLVQEQPSLKV 180
Query: 181 LKAQPAVTPKPVLPKGVTAGTNSAVSKTLATALSSKVKIKFSVRGSELTSSKDTPLQAVG 240
LKAQPAVTPKPVLPKGVTAGTNSAVSKTLATALSSKVKIKFSVRGSELTSSKDTPLQAVG
Sbjct: 181 LKAQPAVTPKPVLPKGVTAGTNSAVSKTLATALSSKVKIKFSVRGSELTSSKDTPLQAVG 240
Query: 241 RRDGTINQSLPCTKDNAKTPRIQSSEDRSESTGNELRPCDDASTSPLASSRQXXXXXXXX 300
RRDGTINQSLPCTKDNAKTPRIQSSEDRSESTGNELRPCDDASTSPLASSRQ
Sbjct: 241 RRDGTINQSLPCTKDNAKTPRIQSSEDRSESTGNELRPCDDASTSPLASSRQEEEYLPEE 300
Query: 301 XXXXXKALRAAMLKSRFAGTIVKAQQKALLDHGKKIDPXXXXXXXXXXXXXXXXXXXXIX 360
KALRAAMLKSRFAGTIVKAQQKALLDHGKKIDP I
Sbjct: 301 PLSPSKALRAAMLKSRFAGTIVKAQQKALLDHGKKIDPAKLQLEKERLEKRQQEEKARIE 360
Query: 361 XXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXXHMMKKTVDIDNSDFLKDLENLSKKWEL 420
D HMMKKTVDIDNSDFLKDLENLSKKWEL
Sbjct: 361 AQVKAAEAAAQLKLDEEMRMKREQERRAARLALHMMKKTVDIDNSDFLKDLENLSKKWEL 420
Query: 421 NPPGKLIVDFVDGIDLPPGLGSPLERLGLFMKKDLXXXXXXXXXDSVSPSTEIDVEEGEI 480
NPPGKLIVDFVDGIDLPPGLGSPLERLGLFMKKDL DSVSPSTEIDVEEGEI
Sbjct: 421 NPPGKLIVDFVDGIDLPPGLGSPLERLGLFMKKDLEEEVEHEMEDSVSPSTEIDVEEGEI 480
Query: 481 SFCQ 484
SFCQ
Sbjct: 481 SFCQ 484
>AK105395
Length = 378
Score = 508 bits (1309), Expect = e-144, Method: Compositional matrix adjust.
Identities = 250/271 (92%), Positives = 253/271 (93%)
Query: 57 MNTSKSRQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQ 116
MNTSKSRQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQ
Sbjct: 1 MNTSKSRQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQ 60
Query: 117 YSNPYEFAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWKLLERKWKDRNLVQEQP 176
YSNPYEFAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWKLLERKWKDRNLVQEQP
Sbjct: 61 YSNPYEFAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWKLLERKWKDRNLVQEQP 120
Query: 177 SLKVLKAQPAVTPKPVLPKGVTAGTNSAVSKTLATALSSKVKIKFSVRGSELTSSKDTPL 236
SLKVLKAQPAVTPKPVLPKGVTAGTNSAVSKTLATALSSKVKIKFSVRGSELTSSKDTPL
Sbjct: 121 SLKVLKAQPAVTPKPVLPKGVTAGTNSAVSKTLATALSSKVKIKFSVRGSELTSSKDTPL 180
Query: 237 QAVGRRDGTINQSLPCTKDNAKTPRIQSSEDRSESTGNELRPCDDASTSPLASSRQXXXX 296
QAVGRRDGTINQSLPCTKDNAKTPRIQSSEDRSESTGNELRPCDDASTSPLASSRQ
Sbjct: 181 QAVGRRDGTINQSLPCTKDNAKTPRIQSSEDRSESTGNELRPCDDASTSPLASSRQEEEY 240
Query: 297 XXXXXXXXXKALRAAMLKSRFAGTIVKAQQK 327
KALRAAMLKSRFA +K ++
Sbjct: 241 LPEEPLSPSKALRAAMLKSRFAAAQLKLDEE 271
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/91 (90%), Positives = 82/91 (90%)
Query: 394 HMMKKTVDIDNSDFLKDLENLSKKWELNPPGKLIVDFVDGIDLPPGLGSPLERLGLFMKK 453
HMMKKTVDIDNSDFLKDLENLSKKWELNPPGKLIVDFVDGIDLPPGLGSPLERLGLFMKK
Sbjct: 288 HMMKKTVDIDNSDFLKDLENLSKKWELNPPGKLIVDFVDGIDLPPGLGSPLERLGLFMKK 347
Query: 454 DLXXXXXXXXXDSVSPSTEIDVEEGEISFCQ 484
DL DSVSPSTEIDVEEGEISFCQ
Sbjct: 348 DLEEEVEHEMEDSVSPSTEIDVEEGEISFCQ 378
>Os02g0601800 Bromodomain containing protein
Length = 714
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 78/104 (75%)
Query: 63 RQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNPYE 122
+QC +ILKKLM K IF++PVD V IPDYF +I+ PMDLGT++ KL S Y++P E
Sbjct: 169 KQCDAILKKLMTQKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSYTSPSE 228
Query: 123 FAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWKLLERKW 166
FAADVRLTFSNAM YNP G+ VH A QLNK+F+S W+ +E+K
Sbjct: 229 FAADVRLTFSNAMTYNPRGHVVHDYAIQLNKMFESRWRTIEKKL 272
>Os02g0250300 Bromodomain containing protein
Length = 600
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 73/97 (75%)
Query: 67 SILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNPYEFAAD 126
S+L +LM HK GW+FN PVD V G+ DYF +I++PMDLGT+K +LT QY NP EFA D
Sbjct: 321 SLLSRLMKHKFGWVFNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHGQYRNPREFADD 380
Query: 127 VRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWKLLE 163
VRLTF NAM YNP G DVH +A+QL IF+++W +E
Sbjct: 381 VRLTFHNAMTYNPKGQDVHFMAEQLLGIFEAQWPEIE 417
>Os01g0648700 Bromodomain containing protein
Length = 238
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 71/96 (73%)
Query: 64 QCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNPYEF 123
+CG +L KL++H+ GW+F PVD + DY+ I +PMDLGTV+R+L ++Y++P+ F
Sbjct: 55 RCGKLLDKLLEHEDGWVFAEPVDARALRLVDYYLRISDPMDLGTVRRRLERRRYADPWAF 114
Query: 124 AADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEW 159
AADVRLTF+NAM YN G+ V+ A +L++IF++ W
Sbjct: 115 AADVRLTFNNAMSYNSAGDPVYESAAELSEIFEAGW 150
>AK111203
Length = 823
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 4/130 (3%)
Query: 63 RQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNPYE 122
+QC I LM H FN PVDP+ GIPDY+ +I+ PMDLGT+K + Y + +E
Sbjct: 206 QQCAQIATALMKHPMSPPFNIPVDPLALGIPDYWTIIKEPMDLGTIKSWVDGGAYKDIHE 265
Query: 123 FAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWKLLERKWKDRNLVQEQPSLKVLK 182
FA DVRL + NA+ YN PG+ + +A L F+ ++ +L + + VQ P +
Sbjct: 266 FADDVRLVWRNALTYNAPGSQISVMAQTLADFFEQKFTVLINRINNPEAVQSSP----VA 321
Query: 183 AQPAVTPKPV 192
+P VT P+
Sbjct: 322 VEPVVTTSPL 331
>Os04g0623100 Bromodomain containing protein
Length = 456
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 64/104 (61%)
Query: 57 MNTSKSRQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQ 116
+ + ++C IL KL K FN PV+ G+ DY VI+ PMDLGTV+ L + +
Sbjct: 116 LRAAMRKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHDYHAVIKCPMDLGTVRANLAAGR 175
Query: 117 YSNPYEFAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWK 160
Y + +FAADVRLTFSNA++YNP G++VH A L F+ +K
Sbjct: 176 YPSHDDFAADVRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYK 219
>Os04g0622700 Bromodomain containing protein
Length = 355
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 62/98 (63%)
Query: 63 RQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNPYE 122
++C IL KL K FN PV+ G+ DY VI+ PMDLGTV+ L + +Y + +
Sbjct: 3 KRCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSHDD 62
Query: 123 FAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWK 160
FAAD+RLTFSNA++YNP G++VH A L F+ +K
Sbjct: 63 FAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYK 100
>Os08g0192800 Bromodomain containing protein
Length = 481
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 60/104 (57%)
Query: 57 MNTSKSRQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQ 116
+ + ++C IL +L K FN+PVD + DY +IRNPMDLGTVK L +
Sbjct: 133 LQAAMRKRCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRNPMDLGTVKENLAFGR 192
Query: 117 YSNPYEFAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWK 160
Y + FA DVRLTFSNA++YNP + VH A L F+ +K
Sbjct: 193 YPSHEAFATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLYK 236
>AK110437
Length = 434
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 51/88 (57%)
Query: 73 MDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNPYEFAADVRLTFS 132
M HK + FN PVD V +P Y VI+ PMDLGTVK++L Y F ADV+L +
Sbjct: 1 MKHKWAFPFNQPVDYVALNLPTYPQVIKQPMDLGTVKQRLADNYYETVEAFDADVQLVWH 60
Query: 133 NAMKYNPPGNDVHGIADQLNKIFDSEWK 160
NAM +N G+DVH +A L FD K
Sbjct: 61 NAMTFNAAGHDVHIMAKTLKGEFDEGLK 88
>Os06g0355500 Bromodomain containing protein
Length = 378
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 69 LKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLT-SKQYSNPYEFAADV 127
+KK+M + FNTPVDPV GIPDYFD+I PMD GT+ + L +Y N + DV
Sbjct: 247 IKKVMKMDAAEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDV 306
Query: 128 RLTFSNAMKYNPPGNDVHGIADQLNKIFDSEW 159
+ + N KYN G+ + + ++ K F W
Sbjct: 307 QFIWDNCTKYNSKGDYIIELMKRVKKGFMKNW 338
>Os08g0109500 Bromodomain containing protein
Length = 590
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 69 LKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLT-SKQYSNPYEFAADV 127
+KK+M + FNTPVDPV GIPDYFD+I PMD GT+ + L +Y N + DV
Sbjct: 246 IKKVMKMDAAEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDV 305
Query: 128 RLTFSNAMKYNPPGNDVHGIADQLNKIFDSEW 159
+ + N KYN G+ + + ++ K F W
Sbjct: 306 QFIWDNCTKYNSKGDYIIELMKRVKKGFMKNW 337
>Os10g0415900 Similar to General control of amino-acid synthesis 5-like 2
(Fragment)
Length = 511
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 67 SILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNPYE-FAA 125
S+LK + +H W F PVD +PDY+D+I++P+DL T+ +++ S+QY E F A
Sbjct: 409 SLLKNMNEHPDAWPFKEPVDSR--DVPDYYDIIKDPIDLKTMSKRVESEQYYVTLEMFVA 466
Query: 126 DVRLTFSNAMKYNPPGNDVHGIADQLNKIF 155
D++ FSNA YN P + A +L F
Sbjct: 467 DMKRMFSNAKTYNSPDTIYYKCASRLESFF 496
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.131 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,282,058
Number of extensions: 493981
Number of successful extensions: 1062
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 1058
Number of HSP's successfully gapped: 16
Length of query: 484
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 379
Effective length of database: 11,553,331
Effective search space: 4378712449
Effective search space used: 4378712449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)