Os08g0109500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Bromodomain containing protein.
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Os08g0109500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Bromodomain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6.13 | 0.116 | 13.1 | -0.0329 | 0.0636 | 0.323 | -0.185 | -3.4 | 0.218 | 13.8 | 30.2 | 4242 | -- | -- |
| 6.83 | 0.122 | 13 | 0.594 | 0.0723 | -0.108 | -0.174 | -- | 0.282 | 13.8 | 31.5 | 47520 | -- | -- |
| 6.26 | 0.117 | 13.1 | -0.0192 | 0.063 | 0.317 | -- | -3.32 | 0.221 | 14.1 | 30.3 | 4240 | -- | -- |
| 6.9 | 0.123 | 13 | 0.496 | 0.0948 | -0.158 | -- | -- | 0.227 | 14.5 | 32.04 | 47520 | -- | -- |
| 6.5 | 0.119 | 13.1 | -0.0574 | -- | 0.339 | -- | -3.56 | 0.219 | -- | 30.34 | 4240 | -- | -- |
| 7.16 | 0.125 | 13 | 0.491 | 0.0759 | -- | -0.168 | -- | 0.233 | 13.9 | -- | -- | -- | -- |
| 7.26 | 0.126 | 13 | 0.486 | 0.0765 | -- | -- | -- | 0.232 | 14.3 | -- | -- | -- | -- |
| 7.26 | 0.126 | 13 | 0.589 | -- | -0.111 | -- | -- | 0.281 | -- | 31.54 | 47520 | -- | -- |
| 10.44 | 0.15 | 13 | -- | 0.0814 | 0.256 | -- | -- | 0.0784 | 14.6 | 26.17 | 47520 | -- | -- |
| 7.61 | 0.129 | 13 | 0.483 | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
| 13.49 | 0.172 | 13 | -- | 0.0673 | -- | -- | -- | 0.178 | 14.1 | -- | -- | -- | -- |
| 8.48 | 0.136 | 13 | -- | -- | 0.386 | -- | -- | 0.101 | -- | 16.81 | 47520 | -- | -- |
| 13.76 | 0.173 | 13 | -- | -- | -- | -- | -- | 0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 6.02 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 2 | 21 |
| 4 | 6.08 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 3 | 23 |
| 6 | 6.09 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 21 |
| 8 | 6.12 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 12 | 6.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 17 | 6.15 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 19 |
| 19 | 6.16 | temperature | 30 | 4320 | > th | dose independent | sin | 3 | NA |
| 23 | 6.16 | temperature | 30 | 4320 | > th | dose independent | rect. | 9 | 7 |
| 43 | 6.17 | temperature | 30 | 4320 | > th | dose independent | sin | 1 | NA |
| 45 | 6.17 | temperature | 30 | 4320 | < th | dose independent | sin | 4 | NA |
| 70 | 6.18 | temperature | 30 | 4320 | > th | dose independent | sin | 23 | NA |
| 72 | 6.18 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 73 | 6.18 | temperature | 30 | 4320 | < th | dose independent | sin | 2 | NA |
| 78 | 6.18 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 89 | 6.18 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 207 | 6.19 | temperature | 30 | 4320 | < th | dose independent | sin | 0 | NA |
| 274 | 6.19 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 22 |
| 284 | 6.19 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 286 | 6.20 | temperature | 30 | 4320 | > th | dose independent | sin | 20 | NA |
| 289 | 6.20 | temperature | 30 | 4320 | < th | dose independent | sin | 11 | NA |
| 291 | 6.20 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 404 | 6.20 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 5 |
| 422 | 6.21 | temperature | 30 | 4320 | > th | dose independent | sin | 11 | NA |
| 424 | 6.21 | temperature | 30 | 4320 | < th | dose independent | sin | 21 | NA |
| 446 | 6.21 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 510 | 6.22 | temperature | 30 | 4320 | > th | dose dependent | sin | 7 | NA |
| 511 | 6.22 | temperature | 30 | 4320 | > th | dose dependent | sin | 0 | NA |
| 518 | 6.22 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 545 | 6.23 | temperature | 30 | 4320 | < th | dose independent | sin | 18 | NA |
| 565 | 6.23 | temperature | 30 | 4320 | > th | dose dependent | sin | 21 | NA |
| 568 | 6.23 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 664 | 6.23 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 702 | 6.23 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 22 |
| 730 | 6.24 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 754 | 6.24 | temperature | 30 | 4320 | > th | dose dependent | sin | 19 | NA |
| 756 | 6.24 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 803 | 6.25 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 838 | 6.25 | temperature | 30 | 4320 | > th | dose dependent | sin | 17 | NA |
| 873 | 6.26 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 943 | 6.26 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 18 |