BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0109500 Os08g0109500|AK069943
(590 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0109500 Bromodomain containing protein 1060 0.0
Os06g0355500 Bromodomain containing protein 592 e-169
AK111203 78 2e-14
Os07g0507700 Bromodomain containing protein 78 2e-14
AK105395 77 4e-14
Os02g0601800 Bromodomain containing protein 73 5e-13
>Os08g0109500 Bromodomain containing protein
Length = 590
Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/576 (90%), Positives = 519/576 (90%)
Query: 15 LKASITADAXXXXXXXXXXXXXXXXXXXXXXTEENGTSPAHHQADNXXXXXXXXXXXXXX 74
LKASITADA TEENGTSPAHHQADN
Sbjct: 15 LKASITADASPMSPSSPSTVDASSKSPSSPSTEENGTSPAHHQADNAPVIAPPPVPEPAP 74
Query: 75 XXXXXXXXSTDVQNAKPKVYSRVRLKFKSAKVLETHQGPSEAKAPVDGGGGKPASAAPEA 134
STDVQNAKPKVYSRVRLKFKSAKVLETHQGPSEAKAPVDGGGGKPASAAPEA
Sbjct: 75 PEPEKPAVSTDVQNAKPKVYSRVRLKFKSAKVLETHQGPSEAKAPVDGGGGKPASAAPEA 134
Query: 135 SKEVAEKAIVSPDGQKDAQAAELSGSDKDKMARKVASINIKSVGLSSVEDKNQDRKADSV 194
SKEVAEKAIVSPDGQKDAQAAELSGSDKDKMARKVASINIKSVGLSSVEDKNQDRKADSV
Sbjct: 135 SKEVAEKAIVSPDGQKDAQAAELSGSDKDKMARKVASINIKSVGLSSVEDKNQDRKADSV 194
Query: 195 SEPLPSKQETVLENVESETALEPRSSQELEVKQATPERQRDDRELTAALEAIKKVMKMDA 254
SEPLPSKQETVLENVESETALEPRSSQELEVKQATPERQRDDRELTAALEAIKKVMKMDA
Sbjct: 195 SEPLPSKQETVLENVESETALEPRSSQELEVKQATPERQRDDRELTAALEAIKKVMKMDA 254
Query: 255 AEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDVQFIWDNCTK 314
AEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDVQFIWDNCTK
Sbjct: 255 AEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDVQFIWDNCTK 314
Query: 315 YNSKGDYIIELMKRVKKGFMKNWLAAGLYSDAQENGGNDNTGDEDVXXXXXXXXXXXXXL 374
YNSKGDYIIELMKRVKKGFMKNWLAAGLYSDAQENGGNDNTGDEDV L
Sbjct: 315 YNSKGDYIIELMKRVKKGFMKNWLAAGLYSDAQENGGNDNTGDEDVKGSKGKSKQKRRRL 374
Query: 375 GNDRHKNDCACAVCQVTRRKKEKDEILAVIENDTAAVNSNISDQQIMEVDSGINNAGSHD 434
GNDRHKNDCACAVCQVTRRKKEKDEILAVIENDTAAVNSNISDQQIMEVDSGINNAGSHD
Sbjct: 375 GNDRHKNDCACAVCQVTRRKKEKDEILAVIENDTAAVNSNISDQQIMEVDSGINNAGSHD 434
Query: 435 TTSSQEQPPQTDMYRRTVVADDSGTLIENHVKFFNNQPLPHDYEDEGSRPYFDEKEEVDY 494
TTSSQEQPPQTDMYRRTVVADDSGTLIENHVKFFNNQPLPHDYEDEGSRPYFDEKEEVDY
Sbjct: 435 TTSSQEQPPQTDMYRRTVVADDSGTLIENHVKFFNNQPLPHDYEDEGSRPYFDEKEEVDY 494
Query: 495 TDLISQEEHTSSQPNDGSEIAQHQHKEPTETSQEIEMEDYPIQKENQSFLQLCARLFPSN 554
TDLISQEEHTSSQPNDGSEIAQHQHKEPTETSQEIEMEDYPIQKENQSFLQLCARLFPSN
Sbjct: 495 TDLISQEEHTSSQPNDGSEIAQHQHKEPTETSQEIEMEDYPIQKENQSFLQLCARLFPSN 554
Query: 555 QSSVFRGRHSLFRQQQRQVSMKGSPLHAAITAIMKR 590
QSSVFRGRHSLFRQQQRQVSMKGSPLHAAITAIMKR
Sbjct: 555 QSSVFRGRHSLFRQQQRQVSMKGSPLHAAITAIMKR 590
>Os06g0355500 Bromodomain containing protein
Length = 378
Score = 592 bits (1526), Expect = e-169, Method: Compositional matrix adjust.
Identities = 300/363 (82%), Positives = 301/363 (82%), Gaps = 1/363 (0%)
Query: 16 KASITADAXXXXXXXXXXXXXXXXXXXXXXTEENGTSPAHHQADNXXXXXXXXXXXXXXX 75
KAS TADA TEENGTSPAHHQADN
Sbjct: 16 KASTTADASPMSLSSPSTVDASSKSPSSPSTEENGTSPAHHQADNAPVIAPPPVPEPAPP 75
Query: 76 XXXXXXXSTDVQNAKPKVYSRVRLKFKSAKVLETHQGPSEAKAPVDGGGGKPASAAPEAS 135
STDVQNAKPKVYSRVRLKFKSAKVLETHQGPSEAKAPVDGGGGKPASAAPEAS
Sbjct: 76 EPEKPAVSTDVQNAKPKVYSRVRLKFKSAKVLETHQGPSEAKAPVDGGGGKPASAAPEAS 135
Query: 136 KEV-AEKAIVSPDGQKDAQAAELSGSDKDKMARKVASINIKSVGLSSVEDKNQDRKADSV 194
KEV AEKAIVSPDGQKDAQAAELSGSDKDK+ARKVASI IKSVGLSSVEDKNQDRKADSV
Sbjct: 136 KEVVAEKAIVSPDGQKDAQAAELSGSDKDKVARKVASIKIKSVGLSSVEDKNQDRKADSV 195
Query: 195 SEPLPSKQETVLENVESETALEPRSSQELEVKQATPERQRDDRELTAALEAIKKVMKMDA 254
SEPLPSKQETVLENVESETALE RSSQELEVKQATPERQRDDRELTAALEAIKKVMKMDA
Sbjct: 196 SEPLPSKQETVLENVESETALELRSSQELEVKQATPERQRDDRELTAALEAIKKVMKMDA 255
Query: 255 AEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDVQFIWDNCTK 314
AEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDVQFIWDNCTK
Sbjct: 256 AEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDVQFIWDNCTK 315
Query: 315 YNSKGDYIIELMKRVKKGFMKNWLAAGLYSDAQENGGNDNTGDEDVXXXXXXXXXXXXXL 374
YNSKGDYIIELMKRVKKGFMKNWLAAGLYSD QENGGNDNTGDEDV L
Sbjct: 316 YNSKGDYIIELMKRVKKGFMKNWLAAGLYSDVQENGGNDNTGDEDVKGSKGKSKQKRRRL 375
Query: 375 GND 377
GND
Sbjct: 376 GND 378
>AK111203
Length = 823
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 249 VMKMDAAEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDVQFI 308
+MK + PFN PVDP+ALGIPDY+ II PMD GTI ++ G Y + + DV+ +
Sbjct: 215 LMKHPMSPPFNIPVDPLALGIPDYWTIIKEPMDLGTIKSWVD-GGAYKDIHEFADDVRLV 273
Query: 309 WDNCTKYNSKGDYI 322
W N YN+ G I
Sbjct: 274 WRNALTYNAPGSQI 287
>Os07g0507700 Bromodomain containing protein
Length = 484
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 246 IKKVMKMDAAEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDV 305
+KK+M + FNTPVDPV GIPDYFD+I PMD GT+ + L +Y N + DV
Sbjct: 69 LKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLT-SKQYSNPYEFAADV 127
Query: 306 QFIWDNCTKYNSKGDYIIELMKRVKKGFMKNW 337
+ + N KYN G+ + + ++ K F W
Sbjct: 128 RLTFSNAMKYNPPGNDVHGIADQLNKIFDSEW 159
>AK105395
Length = 378
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 246 IKKVMKMDAAEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDV 305
+KK+M + FNTPVDPV GIPDYFD+I PMD GT+ + L +Y N + DV
Sbjct: 13 LKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLT-SKQYSNPYEFAADV 71
Query: 306 QFIWDNCTKYNSKGDYIIELMKRVKKGFMKNW 337
+ + N KYN G+ + + ++ K F W
Sbjct: 72 RLTFSNAMKYNPPGNDVHGIADQLNKIFDSEW 103
>Os02g0601800 Bromodomain containing protein
Length = 714
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 246 IKKVMKMDAAEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDV 305
+KK+M + F++PVD V L IPDYF II PMD GTI L+ G Y + + DV
Sbjct: 175 LKKLMTQKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSG-SYTSPSEFAADV 233
Query: 306 QFIWDNCTKYNSKGDYIIELMKRVKKGFMKNW 337
+ + N YN +G + + ++ K F W
Sbjct: 234 RLTFSNAMTYNPRGHVVHDYAIQLNKMFESRW 265
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.126 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,223,832
Number of extensions: 784801
Number of successful extensions: 3105
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 3102
Number of HSP's successfully gapped: 6
Length of query: 590
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 484
Effective length of database: 11,501,117
Effective search space: 5566540628
Effective search space used: 5566540628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 159 (65.9 bits)