Os06g0355500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Bromodomain containing protein.
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Os06g0355500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Bromodomain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.21 | 0.216 | 11.1 | 0.204 | 0.134 | -0.683 | -0.176 | 1.31 | 0.17 | 14.3 | 25.63 | 203 | -- | -- |
| 21.71 | 0.217 | 11.1 | 0.0836 | 0.109 | -0.548 | -0.15 | -- | 0.14 | 13.5 | 25.7 | 215 | -- | -- |
| 21.27 | 0.215 | 11.1 | 0.178 | 0.141 | -0.684 | -- | 1.15 | 0.163 | 13.7 | 25.7 | 160 | -- | -- |
| 21.64 | 0.217 | 11.1 | 0.0659 | 0.124 | -0.562 | -- | -- | 0.136 | 13.1 | 25.7 | 149 | -- | -- |
| 22.03 | 0.219 | 11.1 | 0.163 | -- | -0.573 | -- | 1.09 | 0.157 | -- | 25.9 | 254 | -- | -- |
| 26.66 | 0.242 | 11.1 | -0.0393 | 0.16 | -- | 0.248 | -- | 0.106 | 6.06 | -- | -- | -- | -- |
| 26.81 | 0.242 | 11.1 | -0.0366 | 0.161 | -- | -- | -- | 0.105 | 6.3 | -- | -- | -- | -- |
| 22.21 | 0.219 | 11.1 | 0.035 | -- | -0.475 | -- | -- | 0.126 | -- | 25.74 | 252 | -- | -- |
| 21.7 | 0.217 | 11.1 | -- | 0.121 | -0.555 | -- | -- | 0.126 | 13.1 | 25.7 | 149 | -- | -- |
| 28.16 | 0.248 | 11.1 | -0.0323 | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
| 26.84 | 0.242 | 11.1 | -- | 0.161 | -- | -- | -- | 0.109 | 6.31 | -- | -- | -- | -- |
| 22.24 | 0.22 | 11.1 | -- | -- | -0.471 | -- | -- | 0.121 | -- | 25.78 | 252 | -- | -- |
| 28.19 | 0.248 | 11.1 | -- | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.92 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 3 | 20.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 4 | 20.98 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 5 | 20.99 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 13 |
| 7 | 21.00 | temperature | 25 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 24 | 21.10 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 52 | 21.16 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 53 | 21.17 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 79 | 21.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 111 | 21.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 201 | 21.41 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 205 | 21.42 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 490 | 21.74 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 534 | 21.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 7 |
| 535 | 21.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 9 |
| 557 | 21.79 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 578 | 21.82 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 2 |
| 656 | 21.92 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 817 | 22.13 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |
| 824 | 22.14 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 879 | 22.21 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 963 | 22.31 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 8 |
| 971 | 22.32 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 2 |