Os07g0507700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Bromodomain containing protein.
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Os07g0507700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Bromodomain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.37 | 0.184 | 13.4 | 0.575 | 0.443 | -0.571 | 0.259 | -0.827 | 0.503 | 3 | 24.21 | 231 | -- | -- |
| 16.12 | 0.188 | 13.4 | 0.467 | 0.452 | -0.475 | 0.0528 | -- | 0.484 | 2.62 | 24.21 | 231 | -- | -- |
| 15.57 | 0.184 | 13.4 | 0.549 | 0.45 | -0.567 | -- | -0.705 | 0.496 | 2.98 | 24.25 | 240 | -- | -- |
| 16.13 | 0.188 | 13.4 | 0.465 | 0.452 | -0.475 | -- | -- | 0.484 | 2.62 | 24.21 | 231 | -- | -- |
| 22.18 | 0.219 | 13.4 | 0.505 | -- | -0.543 | -- | -0.609 | 0.475 | -- | 27.1 | 2575 | -- | -- |
| 19.36 | 0.206 | 13.4 | 0.576 | 0.378 | -- | 0.0679 | -- | 0.564 | 2.97 | -- | -- | -- | -- |
| 19.38 | 0.206 | 13.4 | 0.574 | 0.379 | -- | -- | -- | 0.563 | 2.96 | -- | -- | -- | -- |
| 22.57 | 0.221 | 13.4 | 0.388 | -- | -0.494 | -- | -- | 0.448 | -- | 29.5 | 2584 | -- | -- |
| 19.54 | 0.206 | 13.4 | -- | 0.386 | -0.611 | -- | -- | 0.394 | 3.08 | 24.25 | 6190 | -- | -- |
| 27.62 | 0.246 | 13.4 | 0.59 | -- | -- | -- | -- | 0.573 | -- | -- | -- | -- | -- |
| 28.07 | 0.248 | 13.4 | -- | 0.39 | -- | -- | -- | 0.499 | 2.97 | -- | -- | -- | -- |
| 25.46 | 0.235 | 13.4 | -- | -- | -0.549 | -- | -- | 0.362 | -- | 23.86 | 47520 | -- | -- |
| 36.81 | 0.283 | 13.4 | -- | -- | -- | -- | -- | 0.508 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.80 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 2 | 14.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 11 | 14.97 | temperature | 25 | 10 | < th | dose dependent | sin | 12 | NA |
| 16 | 14.99 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 16 |
| 23 | 15.02 | temperature | 15 | 270 | > th | dose dependent | sin | 12 | NA |
| 24 | 15.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 41 | 15.07 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 43 | 15.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 48 | 15.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 3 |
| 54 | 15.11 | temperature | 15 | 10 | > th | dose dependent | sin | 11 | NA |
| 64 | 15.12 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 155 | 15.20 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 10 |
| 206 | 15.24 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 12 |
| 227 | 15.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 385 | 15.31 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 569 | 15.38 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 16 |
| 613 | 15.40 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 647 | 15.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 742 | 15.44 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 764 | 15.45 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 825 | 15.47 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 870 | 15.48 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 14 |