Os02g0601800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Bromodomain containing protein.
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Os02g0601800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Bromodomain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.74 | 0.192 | 12.4 | 0.378 | 0.316 | 0.442 | 0.277 | -0.689 | 0.205 | 19.2 | 20.65 | 10 | -- | -- |
| 18.35 | 0.199 | 12.4 | 0.394 | 0.39 | 0.372 | -0.413 | -- | 0.208 | 20.6 | 31.09 | 9 | -- | -- |
| 16.89 | 0.191 | 12.4 | 0.376 | 0.326 | 0.444 | -- | -0.629 | 0.207 | 19.4 | 23.62 | 9 | -- | -- |
| 18.73 | 0.202 | 12.4 | 0.391 | 0.353 | 0.438 | -- | -- | 0.206 | 19.7 | 29.31 | 9 | -- | -- |
| 21.53 | 0.216 | 12.4 | 0.374 | -- | 0.512 | -- | -0.617 | 0.195 | -- | 20 | 6 | -- | -- |
| 21.17 | 0.216 | 12.4 | 0.366 | 0.622 | -- | -0.458 | -- | 0.201 | 22.1 | -- | -- | -- | -- |
| 21.99 | 0.22 | 12.4 | 0.384 | 0.625 | -- | -- | -- | 0.203 | 22 | -- | -- | -- | -- |
| 23.56 | 0.226 | 12.4 | 0.387 | -- | 0.504 | -- | -- | 0.199 | -- | 17.34 | 4 | -- | -- |
| 22.94 | 0.223 | 12.4 | -- | 0.354 | 0.426 | -- | -- | 0.166 | 19.9 | 30 | 9 | -- | -- |
| 45.55 | 0.315 | 12.4 | 0.392 | -- | -- | -- | -- | 0.203 | -- | -- | -- | -- | -- |
| 25.88 | 0.238 | 12.4 | -- | 0.627 | -- | -- | -- | 0.16 | 22.1 | -- | -- | -- | -- |
| 27.39 | 0.245 | 12.4 | -- | -- | 0.479 | -- | -- | 0.163 | -- | 10.75 | 4 | -- | -- |
| 49.6 | 0.329 | 12.4 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.31 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 2 | 16.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 6 | 16.59 | radiation | 30 | 10 | < th | dose dependent | sin | 3 | NA |
| 7 | 16.62 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 12 | 16.69 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 7 |
| 16 | 16.74 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 4 |
| 21 | 16.77 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 30 | 16.79 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 31 | 16.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 32 | 16.79 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 38 | 16.82 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 59 | 16.91 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 69 | 16.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 90 | 17.01 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 99 | 17.04 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 122 | 17.08 | radiation | 20 | 10 | < th | dose independent | sin | 3 | NA |
| 135 | 17.09 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 19 |
| 175 | 17.16 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 17 |
| 177 | 17.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 187 | 17.17 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 195 | 17.18 | radiation | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 200 | 17.19 | radiation | 1 | 10 | > th | dose dependent | sin | 2 | NA |
| 213 | 17.21 | radiation | 20 | 90 | < th | dose independent | rect. | 1 | 17 |
| 225 | 17.23 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 233 | 17.24 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 245 | 17.26 | radiation | 10 | 30 | > th | dose independent | rect. | 9 | 7 |
| 255 | 17.27 | radiation | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 261 | 17.28 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 275 | 17.29 | radiation | 20 | 10 | < th | dose independent | rect. | 11 | 23 |
| 278 | 17.29 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 12 |
| 299 | 17.30 | radiation | 40 | 10 | < th | dose dependent | rect. | 1 | 19 |
| 302 | 17.31 | temperature | 20 | 720 | > th | dose independent | sin | 9 | NA |
| 304 | 17.31 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 13 |
| 306 | 17.31 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 17 |
| 329 | 17.32 | radiation | 30 | 90 | < th | dose dependent | rect. | 1 | 17 |
| 342 | 17.34 | radiation | 20 | 10 | < th | dose independent | no | NA | NA |
| 348 | 17.34 | radiation | 30 | 10 | < th | dose dependent | rect. | 1 | 17 |
| 357 | 17.35 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 15 |
| 375 | 17.36 | radiation | 20 | 90 | < th | dose independent | rect. | 11 | 23 |
| 376 | 17.36 | radiation | 20 | 10 | < th | dose independent | rect. | 15 | 23 |
| 377 | 17.36 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 430 | 17.36 | radiation | 1 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 461 | 17.38 | radiation | 20 | 10 | < th | dose independent | rect. | 13 | 23 |
| 483 | 17.39 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 497 | 17.40 | radiation | 30 | 10 | < th | dose dependent | rect. | 3 | 15 |
| 514 | 17.42 | radiation | 40 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 526 | 17.43 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 533 | 17.45 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 593 | 17.50 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 8 |
| 667 | 17.56 | radiation | 20 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 674 | 17.57 | radiation | 20 | 90 | < th | dose independent | rect. | 1 | 14 |
| 701 | 17.58 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 706 | 17.58 | radiation | 20 | 10 | < th | dose dependent | rect. | 8 | 12 |
| 836 | 17.63 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 838 | 17.64 | radiation | 1 | 10 | > th | dose independent | sin | 0 | NA |
| 864 | 17.65 | radiation | 10 | 30 | > th | dose independent | rect. | 9 | 5 |
| 867 | 17.65 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 12 |
| 878 | 17.65 | radiation | 1 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 991 | 17.68 | radiation | 20 | 270 | < th | dose independent | rect. | 23 | 9 |