BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0601800 Os02g0601800|AK101873
(714 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0601800 Bromodomain containing protein 1211 0.0
Os02g0250300 Bromodomain containing protein 141 1e-33
Os07g0507700 Bromodomain containing protein 139 5e-33
AK105395 139 8e-33
Os04g0623100 Bromodomain containing protein 129 1e-29
Os04g0622700 Bromodomain containing protein 119 7e-27
Os08g0192800 Bromodomain containing protein 107 3e-23
AK111203 97 5e-20
Os01g0648700 Bromodomain containing protein 94 3e-19
AK110437 84 4e-16
Os06g0355500 Bromodomain containing protein 73 7e-13
Os08g0109500 Bromodomain containing protein 73 8e-13
>Os02g0601800 Bromodomain containing protein
Length = 714
Score = 1211 bits (3133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 607/714 (85%), Positives = 607/714 (85%)
Query: 1 MTPTVLMEFGQQRQIKRGYDEMAFRGMASAAPRGYAETVGESEGAAGSPVRVDSEDSSAP 60
MTPTVLMEFGQQRQIKRGYDEMAFRGMASAAPRGYAETVGESEGAAGSPVRVDSEDSSAP
Sbjct: 1 MTPTVLMEFGQQRQIKRGYDEMAFRGMASAAPRGYAETVGESEGAAGSPVRVDSEDSSAP 60
Query: 61 KRKCISLNSDGFDVKREIFVPAKMSSSERRHLRKRFRTELDSVRNLLKKPEFAVPVPVNR 120
KRKCISLNSDGFDVKREIFVPAKMSSSERRHLRKRFRTELDSVRNLLKKPEFAVPVPVNR
Sbjct: 61 KRKCISLNSDGFDVKREIFVPAKMSSSERRHLRKRFRTELDSVRNLLKKPEFAVPVPVNR 120
Query: 121 XXXXXXXXXXRGKKGQRGNHVVRGAKGRFLPTKPRPEASTVLTEDAIFKQCDAILKKLMT 180
RGKKGQRGNHVVRGAKGRFLPTKPRPEASTVLTEDAIFKQCDAILKKLMT
Sbjct: 121 APALSSSAAPRGKKGQRGNHVVRGAKGRFLPTKPRPEASTVLTEDAIFKQCDAILKKLMT 180
Query: 181 QKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSYTSPSEFAADVRLTFSNA 240
QKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSYTSPSEFAADVRLTFSNA
Sbjct: 181 QKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSYTSPSEFAADVRLTFSNA 240
Query: 241 MTYNPRGHVVHDYAIQLNKMFESRWRTIEKKLASIATEAHVEVDRADSKRRKTPPVDCSE 300
MTYNPRGHVVHDYAIQLNKMFESRWRTIEKKLASIATEAHVEVDRADSKRRKTPPVDCSE
Sbjct: 241 MTYNPRGHVVHDYAIQLNKMFESRWRTIEKKLASIATEAHVEVDRADSKRRKTPPVDCSE 300
Query: 301 VSTECVRPTESVRPTESVKPKMTFEEKESFGNCLASLSEDPEVPSHIIDLLQQCIDNNTD 360
VSTECVRPTESVRPTESVKPKMTFEEKESFGNCLASLSEDPEVPSHIIDLLQQCIDNNTD
Sbjct: 301 VSTECVRPTESVRPTESVKPKMTFEEKESFGNCLASLSEDPEVPSHIIDLLQQCIDNNTD 360
Query: 361 QLGDGEIEIDIHAVSDDLLFELKKHVDKYLQEREQSQQAKSEPSENEAANVSGLSHSSTN 420
QLGDGEIEIDIHAVSDDLLFELKKHVDKYLQEREQSQQAKSEPSENEAANVSGLSHSSTN
Sbjct: 361 QLGDGEIEIDIHAVSDDLLFELKKHVDKYLQEREQSQQAKSEPSENEAANVSGLSHSSTN 420
Query: 421 PCKGGDPVEEDVDICGNASPILIEKDAHNNPNKCXXXXXXXXXXXXXXXXXXXXXXXXXX 480
PCKGGDPVEEDVDICGNASPILIEKDAHNNPNKC
Sbjct: 421 PCKGGDPVEEDVDICGNASPILIEKDAHNNPNKCGSPSSSSSDSGSSSSDSESGSDSESE 480
Query: 481 QEXXXXXXXXXXXXRSEQLVEQEKSDVISPVDAIRPADDVELREQDNESKPAPEGENSKP 540
QE RSEQLVEQEKSDVISPVDAIRPADDVELREQDNESKPAPEGENSKP
Sbjct: 481 QEKGGSPGKPKGSKRSEQLVEQEKSDVISPVDAIRPADDVELREQDNESKPAPEGENSKP 540
Query: 541 DRQVSPDKXXXXXXXXSRYADVIVKAQGILSQGGDXXXXXXXXXXXXXXXXXXXGNXXXX 600
DRQVSPDK SRYADVIVKAQGILSQGGD GN
Sbjct: 541 DRQVSPDKLLRAALLRSRYADVIVKAQGILSQGGDKQEELEKLQKEEKARLLAEGNAAME 600
Query: 601 XXXXXXXXXXXXXXXXXXXXXXQALQEMERTVEINDNLHLKDLEMLGTATTEHIVSSVDE 660
QALQEMERTVEINDNLHLKDLEMLGTATTEHIVSSVDE
Sbjct: 601 ARRAEAEAEAKRKRDLEREKARQALQEMERTVEINDNLHLKDLEMLGTATTEHIVSSVDE 660
Query: 661 TSPEHSQDGMPSFLPGSGNPLEQLGLFMKADXXXXXXDPSSVPSTKDAEEGEIN 714
TSPEHSQDGMPSFLPGSGNPLEQLGLFMKAD DPSSVPSTKDAEEGEIN
Sbjct: 661 TSPEHSQDGMPSFLPGSGNPLEQLGLFMKADEEEEEEDPSSVPSTKDAEEGEIN 714
>Os02g0250300 Bromodomain containing protein
Length = 600
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 130/242 (53%), Gaps = 26/242 (10%)
Query: 168 FKQCDAILKKLMTQKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSYTSPS 227
FK+ ++L +LM K +F+ PVDAV L + DYF IIK PMDLGTI+ +L G Y +P
Sbjct: 316 FKKSMSLLSRLMKHKFGWVFNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHGQYRNPR 375
Query: 228 EFAADVRLTFSNAMTYNPRGHVVHDYAIQLNKMFESRWRTIEKKLASIAT---------E 278
EFA DVRLTF NAMTYNP+G VH A QL +FE++W IE ++ +A+
Sbjct: 376 EFADDVRLTFHNAMTYNPKGQDVHFMAEQLLGIFEAQWPEIEAEVQYLASCPPLPNKFPP 435
Query: 279 AHVEV---DRADSKRR------KTPPVDCSEVSTECVRPTESVRPTESVKPKMTFEEKES 329
++V DR+DS + K+ P+ + + + + + K MT +EK
Sbjct: 436 PPIDVRFLDRSDSVKHHMVLDSKSRPLSHTPTYSARTPSMKKPKAKDPDKRDMTIDEKRK 495
Query: 330 FGNCLASLSEDPEVPSHIIDLLQQCIDNNTDQL--GDGEIEIDIHAVSDDLLFELKKHVD 387
N L +L P +D++ Q I N + D EIE++I ++ + L+EL + V
Sbjct: 496 LSNNLQNL------PPEKLDVVVQIIKNKNLSVRQHDDEIEVEIDSMDTETLWELDRFVA 549
Query: 388 KY 389
Y
Sbjct: 550 NY 551
>Os07g0507700 Bromodomain containing protein
Length = 484
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 78/104 (75%)
Query: 169 KQCDAILKKLMTQKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSYTSPSE 228
+QC +ILKKLM K IF++PVD V IPDYF +I+ PMDLGT++ KL S Y++P E
Sbjct: 63 RQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNPYE 122
Query: 229 FAADVRLTFSNAMTYNPRGHVVHDYAIQLNKMFESRWRTIEKKL 272
FAADVRLTFSNAM YNP G+ VH A QLNK+F+S W+ +E+K
Sbjct: 123 FAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWKLLERKW 166
>AK105395
Length = 378
Score = 139 bits (350), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 78/104 (75%)
Query: 169 KQCDAILKKLMTQKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSYTSPSE 228
+QC +ILKKLM K IF++PVD V IPDYF +I+ PMDLGT++ KL S Y++P E
Sbjct: 7 RQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNPYE 66
Query: 229 FAADVRLTFSNAMTYNPRGHVVHDYAIQLNKMFESRWRTIEKKL 272
FAADVRLTFSNAM YNP G+ VH A QLNK+F+S W+ +E+K
Sbjct: 67 FAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWKLLERKW 110
>Os04g0623100 Bromodomain containing protein
Length = 456
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/331 (32%), Positives = 156/331 (47%), Gaps = 43/331 (12%)
Query: 81 PAKMSSSERRHLRKRFRTELDSVRNLLKKPEFAVPVPVNRXXXXXXXXXXRGKKGQRGNH 140
P M+ E R LR R EL VR L+ + + ++GQ H
Sbjct: 62 PGAMAHREARALRDRLAGELGQVRALIARIDT-------------------WQQGQVKRH 102
Query: 141 VVRGAKGRFLPTKPRPEASTVLTEDAIFKQCDAILKKLMTQKCSNIFDSPVDAVKLNIPD 200
G+ R LPT P A+ K+C+ IL KL K S F++PV+ +L + D
Sbjct: 103 ---GSPRRDLPTPP------AKLRAAMRKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHD 153
Query: 201 YFQIIKKPMDLGTIRNKLDSGSYTSPSEFAADVRLTFSNAMTYNPRGHVVHDYAIQL--- 257
Y +IK PMDLGT+R L +G Y S +FAADVRLTFSNA+ YNP GH VH +A L
Sbjct: 154 YHAVIKCPMDLGTVRANLAAGRYPSHDDFAADVRLTFSNALRYNPAGHEVHTFAGDLLAS 213
Query: 258 -NKMFESRWRTIEKKLASIATEAHVEVDRADSKRRKTPPVDCSEVSTEC-VRPTESVRPT 315
KM+++ E++L + V T PV + +R ++ P
Sbjct: 214 FEKMYKASMSWFEQELKLLEPPMPVP---PPELPPATAPVQVKPRAANVKMRKPKAREPN 270
Query: 316 ESVKPKMTFEEKESFGNCLASLSEDPEVPSHIIDLLQQCIDNNTDQLGDGEIEIDIHAVS 375
K MT EEK L SL E E +++ ++++ N +L GEIE+DI +
Sbjct: 271 ---KRDMTLEEKNLLRVGLESLPE--EKMHNVLQIVRK--RNGNPELVGGEIELDIDEMD 323
Query: 376 DDLLFELKKHVDKYLQEREQSQQAKSEPSEN 406
+ +EL + V+ + + +S++A EN
Sbjct: 324 VETQWELDRFVNNFKKALNKSRRAAIVNGEN 354
>Os04g0622700 Bromodomain containing protein
Length = 355
Score = 119 bits (299), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 128/242 (52%), Gaps = 13/242 (5%)
Query: 169 KQCDAILKKLMTQKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSYTSPSE 228
K+CD IL KL K S F++PV+ +L + DY +IK PMDLGT+R L +G Y S +
Sbjct: 3 KRCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSHDD 62
Query: 229 FAADVRLTFSNAMTYNPRGHVVHDYAIQL----NKMFESRWRTIEKKLASIATEAHVEVD 284
FAAD+RLTFSNA+ YNP GH VH +A L KM+++ E++L E + V
Sbjct: 63 FAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASVSWFEQELK--ILEPPMPVP 120
Query: 285 RADSKRRKTPPVDCSEVSTECVRPTESVRPTESVKPKMTFEEKESFGNCLASLSEDPEVP 344
+ K P +R T++ P K +MT EEK L SL PE
Sbjct: 121 PPELPPAKAPAQVKPRAGNVKMRKTKAREPN---KREMTLEEKNLLRVGLESL---PEEK 174
Query: 345 SHIIDLLQQCIDNNTDQLGDGEIEIDIHAVSDDLLFELKKHVDKYLQEREQSQQAKSEPS 404
H + + + + N + +G GEIE+DI + + +EL + V+K+ + +S++A
Sbjct: 175 MHNVLQIVRKRNGNPELVG-GEIELDIDEMDVETQWELDRFVNKFKKALNKSRRAAIVNG 233
Query: 405 EN 406
EN
Sbjct: 234 EN 235
>Os08g0192800 Bromodomain containing protein
Length = 481
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 108/230 (46%), Gaps = 20/230 (8%)
Query: 166 AIFKQCDAILKKLMTQKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSYTS 225
A+ K+C IL +L QK S F+SPVD +L + DY II+ PMDLGT++ L G Y S
Sbjct: 136 AMRKRCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRNPMDLGTVKENLAFGRYPS 195
Query: 226 PSEFAADVRLTFSNAMTYNPRGHVVHDYAIQLNKMFESRWR--------TIEKKLASIAT 277
FA DVRLTFSNA+ YNP H VH YA L FE ++ ++ +
Sbjct: 196 HEAFATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLYKEALSWFEQECQRLEPPMPL 255
Query: 278 EAHVEVDRADSKRRKTPPVDCSEVSTECVRPTESVRPTESVKPKMTFEEKESFGNCLASL 337
+ PP + RP R E K +M+ EEK + +L
Sbjct: 256 ALPPPPQPPVPMPMQAPP----RIGGGGRRPKPKAR--EPNKREMSDEEKHKLRVEIGNL 309
Query: 338 SEDPEVPSHIIDLLQQCIDNNTDQLGDGE-IEIDIHAVSDDLLFELKKHV 386
E+ + ++LQ NTD GE +E+D + + L+EL + V
Sbjct: 310 PEE-----KMGNVLQIVQKRNTDPALMGEVVELDFDEMDVETLWELDRFV 354
>AK111203
Length = 823
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 61/103 (59%)
Query: 166 AIFKQCDAILKKLMTQKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSYTS 225
A +QC I LM S F+ PVD + L IPDY+ IIK+PMDLGTI++ +D G+Y
Sbjct: 203 APLQQCAQIATALMKHPMSPPFNIPVDPLALGIPDYWTIIKEPMDLGTIKSWVDGGAYKD 262
Query: 226 PSEFAADVRLTFSNAMTYNPRGHVVHDYAIQLNKMFESRWRTI 268
EFA DVRL + NA+TYN G + A L FE ++ +
Sbjct: 263 IHEFADDVRLVWRNALTYNAPGSQISVMAQTLADFFEQKFTVL 305
>Os01g0648700 Bromodomain containing protein
Length = 238
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 165 DAIFKQCDAILKKLMTQKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSYT 224
DA+ + C +L KL+ + +F PVDA L + DY+ I PMDLGT+R +L+ Y
Sbjct: 51 DALLR-CGKLLDKLLEHEDGWVFAEPVDARALRLVDYYLRISDPMDLGTVRRRLERRRYA 109
Query: 225 SPSEFAADVRLTFSNAMTYNPRGHVVHDYAIQLNKMFESRWRTI 268
P FAADVRLTF+NAM+YN G V++ A +L+++FE+ W ++
Sbjct: 110 DPWAFAADVRLTFNNAMSYNSAGDPVYESAAELSEIFEAGWPSV 153
>AK110437
Length = 434
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 54/90 (60%)
Query: 179 MTQKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSYTSPSEFAADVRLTFS 238
M K + F+ PVD V LN+P Y Q+IK+PMDLGT++ +L Y + F ADV+L +
Sbjct: 1 MKHKWAFPFNQPVDYVALNLPTYPQVIKQPMDLGTVKQRLADNYYETVEAFDADVQLVWH 60
Query: 239 NAMTYNPRGHVVHDYAIQLNKMFESRWRTI 268
NAMT+N GH VH A L F+ + I
Sbjct: 61 NAMTFNAAGHDVHIMAKTLKGEFDEGLKKI 90
>Os06g0355500 Bromodomain containing protein
Length = 378
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 175 LKKLMTQKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSG-SYTSPSEFAADV 233
+KK+M + F++PVD V L IPDYF II PMD GTI L+ G Y + + DV
Sbjct: 247 IKKVMKMDAAEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDV 306
Query: 234 RLTFSNAMTYNPRGHVVHDYAIQLNKMFESRW 265
+ + N YN +G + + ++ K F W
Sbjct: 307 QFIWDNCTKYNSKGDYIIELMKRVKKGFMKNW 338
>Os08g0109500 Bromodomain containing protein
Length = 590
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 175 LKKLMTQKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSG-SYTSPSEFAADV 233
+KK+M + F++PVD V L IPDYF II PMD GTI L+ G Y + + DV
Sbjct: 246 IKKVMKMDAAEPFNTPVDPVALGIPDYFDIIDTPMDFGTICQNLERGDKYMNSEDVYKDV 305
Query: 234 RLTFSNAMTYNPRGHVVHDYAIQLNKMFESRW 265
+ + N YN +G + + ++ K F W
Sbjct: 306 QFIWDNCTKYNSKGDYIIELMKRVKKGFMKNW 337
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,604,360
Number of extensions: 897176
Number of successful extensions: 2204
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 2197
Number of HSP's successfully gapped: 13
Length of query: 714
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 606
Effective length of database: 11,396,689
Effective search space: 6906393534
Effective search space used: 6906393534
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 160 (66.2 bits)