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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0648700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bromodomain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.64 (0.0342) R2 : 0.649
β1 : -2.03 (0.133) R2dD : 0.236 R2D : 0.383
β2 : 0.936 (0.0784) R2dC : 0.112 R2C : 0.0759
β3 : 1.49 (0.121) R2dE : 0.203 R2E : 0.245
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.326 (0.0853) R2dN8 : 0.0382 R2N8 : -0.00482
σ : 0.603
deviance : 167.5
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_____
C
peak time of C : 22.1
E
wheather : radiation
threshold : 4.931
memory length : 32992
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
160.69 0.596 5.98 -3.66 1.04 1.97 0.203 6.88 -0.148 22 1.147 22815 -- --
173.71 0.614 5.65 -2.46 1.04 1.19 -0.183 -- 0.348 22 5.404 31663 -- --
160.55 0.59 5.98 -3.67 0.998 1.91 -- 6.73 -0.153 22 1.192 22870 -- --
167.5 0.603 5.64 -2.03 0.936 1.49 -- -- 0.326 22.1 4.931 32992 -- --
199.05 0.657 5.99 -3.41 -- 1.95 -- 6.46 -0.177 -- 1.39 29055 -- --
234.05 0.717 5.78 -2.76 0.849 -- -0.447 -- -0.184 21.7 -- -- -- --
234.8 0.718 5.78 -2.75 0.851 -- -- -- -0.184 21.8 -- -- -- --
209.15 0.674 5.61 -1.81 -- 1.71 -- -- 0.446 -- 4.74 37676 -- --
184.12 0.632 5.5 -- 0.883 2.59 -- -- 1.07 21.9 3.344 47520 -- --
277.92 0.779 5.76 -2.74 -- -- -- -- -0.184 -- -- -- -- --
433.74 0.974 5.71 -- 0.845 -- -- -- 0.122 21.5 -- -- -- --
230.81 0.708 5.48 -- -- 2.57 -- -- 1.06 -- 3.36 47520 -- --
475.82 1.02 5.69 -- -- -- -- -- 0.119 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 157.27 radiation 1 43200 > th dose independent rect. 5 9
2 157.27 radiation 1 43200 < th dose independent rect. 5 9
5 157.33 temperature 10 43200 > th dose dependent rect. 2 1
6 157.34 temperature 30 43200 < th dose dependent rect. 2 1
7 157.34 temperature 10 43200 > th dose dependent rect. 22 2
8 157.35 temperature 15 43200 > th dose dependent rect. 6 1
13 157.38 temperature 30 43200 < th dose dependent rect. 22 1
24 157.42 radiation 1 43200 < th dose independent rect. 22 16
25 157.42 temperature 10 43200 > th dose dependent rect. 22 5
48 157.45 temperature 30 43200 < th dose dependent rect. 5 2
49 157.45 temperature 30 43200 < th dose dependent rect. 22 5
55 157.46 temperature 10 43200 > th dose dependent rect. 22 10
62 157.48 radiation 1 43200 < th dose independent sin 4 NA
71 157.48 temperature 30 43200 < th dose dependent rect. 22 10
110 157.52 temperature 10 43200 > th dose dependent rect. 1 7
116 157.53 temperature 30 43200 < th dose dependent rect. 1 7
129 157.55 radiation 1 43200 > th dose independent sin 4 NA
253 157.64 radiation 1 43200 < th dose dependent rect. 5 5
346 157.73 temperature 10 43200 > th dose dependent sin 10 NA
423 157.80 temperature 30 43200 < th dose dependent sin 10 NA
532 157.95 radiation 1 43200 < th dose dependent rect. 22 12
651 158.10 radiation 1 43200 < th dose dependent sin 7 NA
687 158.13 radiation 1 43200 < th dose independent rect. 7 11
898 158.34 temperature 25 43200 < th dose independent rect. 8 1
914 158.35 radiation 1 43200 > th dose independent rect. 7 11