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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0622700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bromodomain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.63 (0.0283) R2 : 0.011
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.135 (0.0596) R2dN8 : 0.0143 R2N8 : 0.011
σ : 0.533
deviance : 130.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
100.96 0.472 3.56 1.12 0.285 -0.968 0.326 0.844 0.431 19.2 20.24 710 -- --
101.38 0.469 3.57 1.01 0.233 -0.98 0.403 -- 0.397 19.7 18.81 789 -- --
101.19 0.469 3.55 1.17 0.276 -0.97 -- 1.12 0.447 19.4 20.4 730 -- --
101.72 0.47 3.58 0.944 0.14 -0.862 -- -- 0.375 21.4 18.94 958 -- --
101.07 0.468 3.53 1.27 -- -0.789 -- 1.18 0.468 -- 21.42 1300 -- --
118.27 0.51 3.61 0.68 0.0739 -- -0.11 -- 0.211 12.1 -- -- -- --
118.3 0.509 3.61 0.676 0.0769 -- -- -- 0.211 13 -- -- -- --
101.91 0.47 3.57 0.963 -- -0.818 -- -- 0.387 -- 18.13 1305 -- --
122.35 0.515 3.6 -- 0.0728 -0.536 -- -- 0.244 21.9 21.22 978 -- --
118.67 0.509 3.61 0.673 -- -- -- -- 0.209 -- -- -- -- --
130.36 0.534 3.63 -- 0.0661 -- -- -- 0.135 12.6 -- -- -- --
122.35 0.515 3.61 -- -- -0.481 -- -- 0.22 -- 21.8 1173 -- --
130.63 0.533 3.63 -- -- -- -- -- 0.135 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 97.48 temperature 20 1440 > th dose dependent rect. 21 2
30 99.23 temperature 20 1440 > th dose dependent rect. 19 14
59 99.53 wind 5 43200 > th dose dependent rect. 5 11
64 99.55 temperature 20 720 > th dose dependent rect. 17 21
70 99.59 temperature 20 1440 > th dose dependent sin 11 NA
75 99.62 humidity 90 43200 > th dose independent rect. 2 14
108 99.77 wind 5 43200 > th dose dependent sin 2 NA
122 99.82 wind 7 43200 > th dose independent rect. 23 16
129 99.84 wind 7 43200 < th dose independent rect. 23 16
132 99.85 temperature 10 1440 > th dose dependent rect. 21 2
133 99.85 temperature 30 1440 < th dose dependent rect. 21 2
135 99.87 wind 7 43200 > th dose independent rect. 2 13
136 99.87 wind 7 43200 < th dose independent rect. 2 13
137 99.87 humidity 90 43200 > th dose independent rect. 2 21
141 99.88 humidity 90 43200 > th dose independent rect. 22 1
142 99.88 humidity 90 43200 < th dose independent rect. 22 1
143 99.88 wind 7 43200 < th dose independent rect. 4 11
146 99.89 wind 7 43200 > th dose independent sin 4 NA
147 99.89 wind 7 43200 < th dose independent sin 3 NA
154 99.91 wind 7 43200 > th dose independent rect. 4 11
229 100.05 wind 5 43200 < th dose independent rect. 9 6
238 100.07 wind 5 43200 > th dose independent rect. 9 6
241 100.07 humidity 90 43200 > th dose dependent rect. 22 1
257 100.10 humidity 90 43200 > th dose independent sin 3 NA
270 100.11 wind 7 43200 > th dose dependent rect. 18 21
298 100.17 temperature 20 1440 > th dose dependent rect. 6 2
304 100.18 wind 7 43200 > th dose independent rect. 20 19
312 100.19 temperature 20 1440 > th dose dependent rect. 3 6
319 100.20 humidity 90 43200 > th dose dependent rect. 4 20
320 100.21 humidity 90 43200 < th dose independent rect. 2 17
334 100.23 humidity 80 43200 > th dose independent rect. 8 5
389 100.27 humidity 90 43200 > th dose dependent rect. 3 16
397 100.28 humidity 90 43200 > th dose dependent rect. 12 12
400 100.28 humidity 90 43200 > th dose dependent rect. 11 14
403 100.29 humidity 80 43200 < th dose independent rect. 8 6
406 100.29 humidity 90 43200 < th dose independent rect. 2 21
430 100.31 humidity 90 43200 > th dose independent rect. 3 8
437 100.31 humidity 90 43200 > th dose dependent rect. 14 10
462 100.34 radiation 1 14400 < th dose independent rect. 5 1
465 100.34 humidity 90 43200 > th dose independent rect. 22 21
474 100.35 wind 7 43200 < th dose independent rect. 9 3
481 100.35 humidity 90 43200 > th dose dependent sin 19 NA
491 100.36 radiation 1 14400 > th dose independent rect. 5 1
492 100.36 wind 7 43200 > th dose independent rect. 9 3
596 100.43 humidity 90 43200 < th dose independent sin 3 NA
601 100.43 wind 9 43200 < th dose dependent rect. 9 3
685 100.48 humidity 90 43200 < th dose independent rect. 6 22
687 100.48 humidity 90 43200 > th dose dependent sin 2 NA
704 100.49 humidity 90 43200 > th dose independent rect. 6 22
800 100.54 wind 5 43200 > th dose dependent no NA NA
815 100.55 humidity 90 43200 > th dose independent no NA NA
838 100.56 humidity 90 43200 < th dose independent rect. 22 21
852 100.56 wind 5 43200 > th dose dependent rect. 7 23
854 100.56 wind 5 43200 > th dose dependent rect. 13 23
856 100.57 radiation 1 43200 > th dose independent rect. 18 13
874 100.58 humidity 90 43200 > th dose independent rect. 15 23
896 100.59 humidity 90 43200 > th dose dependent rect. 6 1
939 100.61 humidity 90 43200 > th dose independent rect. 11 23
940 100.61 humidity 90 43200 > th dose independent rect. 17 23
988 100.63 humidity 70 43200 > th dose dependent rect. 10 1