BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0622700 Os04g0622700|Os04g0622700
(355 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0622700 Bromodomain containing protein 639 0.0
Os04g0623100 Bromodomain containing protein 569 e-162
Os08g0192800 Bromodomain containing protein 320 8e-88
Os04g0622000 Conserved hypothetical protein 267 1e-71
Os02g0250300 Bromodomain containing protein 140 1e-33
Os02g0601800 Bromodomain containing protein 119 4e-27
Os07g0507700 Bromodomain containing protein 93 2e-19
AK105395 93 2e-19
Os01g0648700 Bromodomain containing protein 82 7e-16
AK111203 78 1e-14
AK110437 71 1e-12
>Os04g0622700 Bromodomain containing protein
Length = 355
Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/355 (89%), Positives = 317/355 (89%)
Query: 1 MRKRCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSH 60
MRKRCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSH
Sbjct: 1 MRKRCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSH 60
Query: 61 DDFAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASVSWFEQELKILEXXXXXX 120
DDFAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASVSWFEQELKILE
Sbjct: 61 DDFAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASVSWFEQELKILEPPMPVP 120
Query: 121 XXXXXXXXXXXQVKPRAGNVKMRKTKAREPNKREMTLEEKNLLRVGLESLPEEKMHNVLQ 180
QVKPRAGNVKMRKTKAREPNKREMTLEEKNLLRVGLESLPEEKMHNVLQ
Sbjct: 121 PPELPPAKAPAQVKPRAGNVKMRKTKAREPNKREMTLEEKNLLRVGLESLPEEKMHNVLQ 180
Query: 181 IVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNKFKKALNKSRRAAIVNGENADVID 240
IVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNKFKKALNKSRRAAIVNGENADVID
Sbjct: 181 IVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNKFKKALNKSRRAAIVNGENADVID 240
Query: 241 ASVANDSDMLVNGSTATMVDNGDVTMAIESKDPDKITTQAEQLDEYVDAVADPEFLSWPW 300
ASVANDSDMLVNGSTATMVDNGDVTMAIESKDPDKITTQAEQLDEYVDAVADPEFLSWPW
Sbjct: 241 ASVANDSDMLVNGSTATMVDNGDVTMAIESKDPDKITTQAEQLDEYVDAVADPEFLSWPW 300
Query: 301 VRPCVDVGDEMPTATYQSVEIEKDTEAAXXXXXXXXXXXXXXXXXXXXXNAHSLV 355
VRPCVDVGDEMPTATYQSVEIEKDTEAA NAHSLV
Sbjct: 301 VRPCVDVGDEMPTATYQSVEIEKDTEAASSGSSSSSDSGSSKDSVSESGNAHSLV 355
>Os04g0623100 Bromodomain containing protein
Length = 456
Score = 569 bits (1466), Expect = e-162, Method: Compositional matrix adjust.
Identities = 289/355 (81%), Positives = 295/355 (83%), Gaps = 18/355 (5%)
Query: 1 MRKRCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSH 60
MRKRC+QILAKLRKDKRSIWFNAPVEVDRLGL DYHAVIKCPMDLGTVRANLAAGRYPSH
Sbjct: 120 MRKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHDYHAVIKCPMDLGTVRANLAAGRYPSH 179
Query: 61 DDFAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASVSWFEQELKILEXXXXXX 120
DDFAAD+RLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKAS+SWFEQELK+LE
Sbjct: 180 DDFAADVRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASMSWFEQELKLLEPPMPVP 239
Query: 121 XXXXXXXXXXXQVKPRAGNVKMRKTKAREPNKREMTLEEKNLLRVGLESLPEEKMHNVLQ 180
QVKPRA NVKMRK KAREPNKR+MTLEEKNLLRVGLESLPEEKMHNVLQ
Sbjct: 240 PPELPPATAPVQVKPRAANVKMRKPKAREPNKRDMTLEEKNLLRVGLESLPEEKMHNVLQ 299
Query: 181 IVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNKFKKALNKSRRAAIVNGENADVID 240
IVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVN FKKALNKSRRAAIVNGENADVID
Sbjct: 300 IVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNNFKKALNKSRRAAIVNGENADVID 359
Query: 241 ASVANDSDMLVNGSTATMVDNGDVTMAIESKDPDKITTQAEQLDEYVDAVADPEFLSWPW 300
ASVANDSDMLVNGSTATMVDNGDVTMAIESKDPDKITTQAEQLDEY
Sbjct: 360 ASVANDSDMLVNGSTATMVDNGDVTMAIESKDPDKITTQAEQLDEY-------------- 405
Query: 301 VRPCVDVGDEMPTATYQSVEIEKDTEAAXXXXXXXXXXXXXXXXXXXXXNAHSLV 355
VD+GDEMPTATYQSVEIEKDTEAA NAHSLV
Sbjct: 406 ----VDIGDEMPTATYQSVEIEKDTEAASSGSSSSSDSGSSKDSVSESGNAHSLV 456
>Os08g0192800 Bromodomain containing protein
Length = 481
Score = 320 bits (821), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 173/330 (52%), Positives = 214/330 (64%), Gaps = 26/330 (7%)
Query: 1 MRKRCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSH 60
MRKRC QIL +LRK K S+WFN+PV+V+RL L DYHA+I+ PMDLGTV+ NLA GRYPSH
Sbjct: 137 MRKRCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRNPMDLGTVKENLAFGRYPSH 196
Query: 61 DDFAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASVSWFEQELK--ILEXXXX 118
+ FA D+RLTFSNALRYNPA H VH +A +LLA+FE +YK ++SWFEQE +
Sbjct: 197 EAFATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLYKEALSWFEQECQRLEPPMPLA 256
Query: 119 XXXXXXXXXXXXXQVKPRAGNVKMR-KTKAREPNKREMTLEEKNLLRVGLESLPEEKMHN 177
Q PR G R K KAREPNKREM+ EEK+ LRV + +LPEEKM N
Sbjct: 257 LPPPPQPPVPMPMQAPPRIGGGGRRPKPKAREPNKREMSDEEKHKLRVEIGNLPEEKMGN 316
Query: 178 VLQIVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNKFKKALNKSRRAAIVNGENAD 237
VLQIV+KRN +P L+G +ELD DEMDVET WELDRFV KKAL+KSRR +NG+ D
Sbjct: 317 VLQIVQKRNTDPALMGEVVELDFDEMDVETLWELDRFVVNCKKALSKSRRTVAMNGDAVD 376
Query: 238 VIDASVANDSDMLVN-GSTATMVDNGDVTMAIESKDPDKITTQAEQLDEYVDAVADPEFL 296
D + VN ++V+ GD E+ P+K ++ + +DEY
Sbjct: 377 ATAIVPTEDDTVQVNVHHQPSVVEIGDS----ENDTPEKRVSEVDMVDEY---------- 422
Query: 297 SWPWVRPCVDVGDEMPTATYQSVEIEKDTE 326
VD+GDEMPTA YQSVEIE+D +
Sbjct: 423 --------VDIGDEMPTANYQSVEIERDAQ 444
>Os04g0622000 Conserved hypothetical protein
Length = 338
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 141/177 (79%), Positives = 147/177 (83%), Gaps = 19/177 (10%)
Query: 152 KREMTLEEKNLLRVGLESLPEEKMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWEL 211
K E+TLEEKNLLRVGLESLPE+KMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWEL
Sbjct: 156 KWEITLEEKNLLRVGLESLPEKKMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWEL 215
Query: 212 DRFVNKFKKALNKSRRAAIVNGENADVIDASVANDSDMLVNGSTATMVDNGDVTMAIESK 271
DRFVN FKKALNKSRRAAIVNGENADVIDASVANDS +LVNGSTATMVDNGDV MAIESK
Sbjct: 216 DRFVNNFKKALNKSRRAAIVNGENADVIDASVANDSYVLVNGSTATMVDNGDVAMAIESK 275
Query: 272 DPDKITTQAEQLDEYVDAVADPEFLSWPWVRPCVDVGDEMPTATYQSVEIEKDTEAA 328
DPDKITTQAEQLDEY VD+GDEMPTAT S+ I + A
Sbjct: 276 DPDKITTQAEQLDEY------------------VDIGDEMPTATL-SLNIHRPIRGA 313
>Os02g0250300 Bromodomain containing protein
Length = 600
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 130/251 (51%), Gaps = 29/251 (11%)
Query: 3 KRCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSHDD 62
K+ +L++L K K FN PV+ LGL DY A+IK PMDLGT++ L G+Y + +
Sbjct: 317 KKSMSLLSRLMKHKFGWVFNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHGQYRNPRE 376
Query: 63 FAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASVSWFEQELKILEXXXXXXXX 122
FA D+RLTF NA+ YNP G +VH A LL FE + E E++ L
Sbjct: 377 FADDVRLTFHNAMTYNPKGQDVHFMAEQLLGIFEAQWPE----IEAEVQYLASCPPLPNK 432
Query: 123 XXXXXXXXXQVKPRAGNVKMRKT--------------KAREPN----------KREMTLE 158
+ R+ +VK AR P+ KR+MT++
Sbjct: 433 FPPPPIDVRFLD-RSDSVKHHMVLDSKSRPLSHTPTYSARTPSMKKPKAKDPDKRDMTID 491
Query: 159 EKNLLRVGLESLPEEKMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNKF 218
EK L L++LP EK+ V+QI++ +N + EIE++ID MD ET WELDRFV +
Sbjct: 492 EKRKLSNNLQNLPPEKLDVVVQIIKNKNLSVRQHDDEIEVEIDSMDTETLWELDRFVANY 551
Query: 219 KKALNKSRRAA 229
KK L+K +R A
Sbjct: 552 KKNLSKQKRKA 562
>Os02g0601800 Bromodomain containing protein
Length = 714
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 121/245 (49%), Gaps = 19/245 (7%)
Query: 3 KRCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSHDD 62
K+CD IL KL K S F++PV+ +L + DY +IK PMDLGT+R L +G Y S +
Sbjct: 169 KQCDAILKKLMTQKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSYTSPSE 228
Query: 63 FAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASVSWFEQELKILEXXXXXXXX 122
FAAD+RLTFSNA+ YNP GH VH +A L FE W E K+
Sbjct: 229 FAADVRLTFSNAMTYNPRGHVVHDYAIQLNKMFESR------WRTIEKKLASIATEAHVE 282
Query: 123 XXXXXXXXXQVKP----RAGNVKMRKTKAREPN---KREMTLEEKNLLRVGLESL---PE 172
+ P +R T++ P K +MT EEK L SL PE
Sbjct: 283 VDRADSKRRKTPPVDCSEVSTECVRPTESVRPTESVKPKMTFEEKESFGNCLASLSEDPE 342
Query: 173 EKMH--NVLQIVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNKFKKALNKSRRAAI 230
H ++LQ N + +L GEIE+DI + + +EL + V+K+ + +S++A
Sbjct: 343 VPSHIIDLLQQCIDNNTD-QLGDGEIEIDIHAVSDDLLFELKKHVDKYLQEREQSQQAKS 401
Query: 231 VNGEN 235
EN
Sbjct: 402 EPSEN 406
>Os07g0507700 Bromodomain containing protein
Length = 484
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 65/99 (65%), Gaps = 2/99 (2%)
Query: 3 KRCDQILAKLRKDKRSIW-FNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSHD 61
++C IL KL D +S W FN PV+ G+ DY VI+ PMDLGTV+ L + +Y +
Sbjct: 63 RQCGSILKKLM-DHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNPY 121
Query: 62 DFAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYK 100
+FAAD+RLTFSNA++YNP G++VH A L F+ +K
Sbjct: 122 EFAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWK 160
>AK105395
Length = 378
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 62/98 (63%)
Query: 3 KRCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSHDD 62
++C IL KL K FN PV+ G+ DY VI+ PMDLGTV+ L + +Y + +
Sbjct: 7 RQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNPYE 66
Query: 63 FAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYK 100
FAAD+RLTFSNA++YNP G++VH A L F+ +K
Sbjct: 67 FAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWK 104
>Os01g0648700 Bromodomain containing protein
Length = 238
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 93/219 (42%), Gaps = 45/219 (20%)
Query: 4 RCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSHDDF 63
RC ++L KL + + F PV+ L L DY+ I PMDLGTVR L RY F
Sbjct: 55 RCGKLLDKLLEHEDGWVFAEPVDARALRLVDYYLRISDPMDLGTVRRRLERRRYADPWAF 114
Query: 64 AADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASVSWFEQELKILEXXXXXXXXX 123
AAD+RLTF+NA+ YN AG V+ A +L FE
Sbjct: 115 AADVRLTFNNAMSYNSAGDPVYESAAELSEIFE--------------------------- 147
Query: 124 XXXXXXXXQVKPRAGNVKMRKTKAREPNKREMTLEEKNLLRVGLESLPEEKMHNVLQIVR 183
AG + R P+ E K L L LP V +I++
Sbjct: 148 -------------AGWPSVLAAPPRPPDA-----ERKRRLSGLLPRLPVGAQVTVAEIMK 189
Query: 184 KRNGNPELVGGEIELDIDEMDVETQWELDRFVNKFKKAL 222
KR+G V G +E+D+D D T ELDR V + AL
Sbjct: 190 KRDGCLREVNGMMEVDLDRADSATLDELDRMVAEHGAAL 228
>AK111203
Length = 823
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 55/97 (56%)
Query: 3 KRCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSHDD 62
++C QI L K S FN PV+ LG+ DY +IK PMDLGT+++ + G Y +
Sbjct: 206 QQCAQIATALMKHPMSPPFNIPVDPLALGIPDYWTIIKEPMDLGTIKSWVDGGAYKDIHE 265
Query: 63 FAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMY 99
FA D+RL + NAL YN G ++ A L FE+ +
Sbjct: 266 FADDVRLVWRNALTYNAPGSQISVMAQTLADFFEQKF 302
>AK110437
Length = 434
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 51/87 (58%)
Query: 14 KDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSHDDFAADIRLTFSN 73
K K + FN PV+ L L Y VIK PMDLGTV+ LA Y + + F AD++L + N
Sbjct: 2 KHKWAFPFNQPVDYVALNLPTYPQVIKQPMDLGTVKQRLADNYYETVEAFDADVQLVWHN 61
Query: 74 ALRYNPAGHEVHTFAGDLLASFEKMYK 100
A+ +N AGH+VH A L F++ K
Sbjct: 62 AMTFNAAGHDVHIMAKTLKGEFDEGLK 88
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,364,912
Number of extensions: 403794
Number of successful extensions: 1166
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1160
Number of HSP's successfully gapped: 12
Length of query: 355
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 253
Effective length of database: 11,709,973
Effective search space: 2962623169
Effective search space used: 2962623169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)