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Os02g0250300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bromodomain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.12 (0.0241) R2 : 0.703
β1 : 2.14 (0.0882) R2dD : 0.399 R2D : 0.283
β2 : 1.29 (0.0592) R2dC : 0.309 R2C : 0.258
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.6 (0.0514) R2dN8 : 0.119 R2N8 : 0.011
σ : 0.453
deviance : 93.4
__
_____
C
peak time of C : 14.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
85.73 0.435 6.14 1.95 1.29 -0.593 -0.19 2.08 0.698 14.7 1.3 1329 -- --
91.11 0.445 6.1 2.08 1.3 -0.422 -0.107 -- 0.696 14.7 1.1 2475 -- --
85.86 0.432 6.14 1.95 1.28 -0.594 -- 2.08 0.697 14.7 1.3 1327 -- --
91.08 0.444 6.1 2.04 1.3 -0.384 -- -- 0.688 14.7 1.188 2486 -- --
156.58 0.586 6.12 2.3 -- 0.615 -- -0.106 0.589 -- 3.2 1077 -- --
93.22 0.453 6.11 2.15 1.29 -- -0.225 -- 0.601 14.6 -- -- -- --
93.4 0.453 6.12 2.14 1.29 -- -- -- 0.6 14.6 -- -- -- --
156.17 0.585 6.12 2.27 -- 0.649 -- -- 0.576 -- 3.7 5395 -- --
102.81 0.472 6.23 -- 1.25 -2.03 -- -- 0.155 14.5 7.459 30119 -- --
190.54 0.645 6.12 2.09 -- -- -- -- 0.567 -- -- -- -- --
214.28 0.685 6.17 -- 1.25 -- -- -- 0.361 14.6 -- -- -- --
197.04 0.654 6.24 -- -- -1.91 -- -- 0.103 -- 7.2 32607 -- --
305.41 0.816 6.18 -- -- -- -- -- 0.336 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.29 humidity 60.0 720 > th dose independent rect. 17 10
2 81.80 temperature 30.0 270 < th dose independent rect. 9 11
3 82.09 temperature 30.0 270 < th dose independent rect. 23 22
4 82.15 humidity 60.0 720 > th dose independent rect. 16 4
7 82.42 temperature 30.0 270 < th dose independent rect. 15 13
9 82.46 humidity 50.0 720 > th dose independent rect. 15 13
10 82.47 humidity 70.0 720 > th dose independent rect. 17 18
12 82.52 radiation 10.0 720 < th dose dependent rect. 17 10
15 82.72 temperature 30.0 720 < th dose independent rect. 16 4
17 82.74 temperature 30.0 720 < th dose independent rect. 17 10
21 82.88 humidity 50.0 270 > th dose independent rect. 9 11
24 82.91 radiation 1.0 10 < th dose dependent rect. 2 20
27 82.98 radiation 1.0 720 < th dose independent rect. 17 10
29 82.99 humidity 50.0 720 > th dose independent rect. 15 21
34 83.11 wind 3.0 90 < th dose independent rect. 2 1
36 83.11 humidity 80.0 90 < th dose dependent rect. 17 3
38 83.12 humidity 80.0 10 < th dose dependent rect. 18 2
41 83.13 wind 9.0 14400 > th dose dependent sin 8 NA
47 83.22 humidity 50.0 270 > th dose independent rect. 22 23
52 83.33 temperature 30.0 720 < th dose independent rect. 8 4
54 83.34 temperature 30.0 720 < th dose independent rect. 8 20
57 83.38 humidity 50.0 720 > th dose independent rect. 24 20
60 83.41 temperature 30.0 90 < th dose dependent rect. 18 3
62 83.42 atmosphere 1000.0 90 > th dose dependent rect. 2 1
64 83.47 wind 9.0 4320 < th dose independent rect. 18 17
69 83.50 atmosphere 1000.0 10 > th dose dependent rect. 2 2
75 83.57 humidity 80.0 10 < th dose independent rect. 18 2
81 83.60 wind 9.0 4320 > th dose independent rect. 20 15
84 83.61 temperature 30.0 90 < th dose dependent rect. 2 1
90 83.64 humidity 70.0 90 > th dose independent rect. 17 11
93 83.66 wind 5.0 90 < th dose dependent rect. 2 1
94 83.67 wind 9.0 14400 > th dose independent sin 9 NA
106 83.74 temperature 30.0 720 < th dose independent rect. 9 2
108 83.76 wind 9.0 4320 > th dose dependent rect. 20 15
115 83.82 radiation 1.0 10 < th dose independent rect. 2 20
117 83.85 wind 1.0 43200 < th dose dependent rect. 4 1
120 83.86 wind 9.0 4320 < th dose independent rect. 20 15
137 83.98 temperature 30.0 720 < th dose independent rect. 7 6
143 84.00 wind 9.0 14400 < th dose independent sin 9 NA
146 84.01 humidity 80.0 90 < th dose independent rect. 17 3
156 84.11 wind 5.0 4320 > th dose dependent rect. 18 14
163 84.15 radiation 1.0 270 > th dose dependent rect. 17 2
180 84.19 humidity 80.0 720 < th dose independent rect. 7 2
181 84.19 humidity 70.0 10 > th dose independent rect. 18 11
182 84.19 humidity 50.0 720 > th dose independent rect. 8 20
185 84.20 wind 1.0 1440 > th dose independent rect. 23 12
196 84.26 atmosphere 1000.0 90 > th dose independent rect. 2 1
199 84.27 precipitation 0.1 90 < th dose independent rect. 2 1
202 84.27 atmosphere 995.0 90 > th dose independent rect. 3 23
203 84.27 precipitation 0.1 90 < th dose dependent rect. 2 1
206 84.28 temperature 10.0 90 > th dose independent rect. 2 1
208 84.28 temperature 30.0 90 < th dose independent rect. 2 1
209 84.28 humidity 50.0 90 > th dose independent rect. 2 1
213 84.28 atmosphere 1010.0 90 < th dose independent rect. 2 1
215 84.28 radiation 1.0 90 < th dose independent rect. 2 1
220 84.28 temperature 10.0 90 > th dose independent rect. 3 23
221 84.28 radiation 1.0 90 < th dose dependent rect. 2 1
226 84.29 temperature 30.0 90 < th dose dependent rect. 18 1
227 84.29 humidity 50.0 720 > th dose dependent rect. 17 2
233 84.33 wind 1.0 1440 > th dose independent rect. 2 8
240 84.35 humidity 70.0 720 > th dose independent rect. 24 11
251 84.39 humidity 70.0 720 > th dose independent rect. 9 1
252 84.39 humidity 70.0 90 > th dose independent rect. 18 3
267 84.43 wind 5.0 14400 > th dose dependent rect. 5 2
292 84.54 radiation 1.0 43200 < th dose dependent rect. 23 4
309 84.62 wind 1.0 1440 < th dose independent rect. 23 12
314 84.64 temperature 30.0 720 < th dose independent rect. 16 20
327 84.67 wind 5.0 14400 > th dose independent rect. 5 2
328 84.67 wind 1.0 1440 < th dose independent rect. 2 8
333 84.68 wind 1.0 1440 > th dose independent sin 7 NA
339 84.70 wind 1.0 1440 > th dose independent rect. 2 5
343 84.71 wind 7.0 4320 < th dose independent rect. 18 13
344 84.71 wind 7.0 4320 < th dose independent rect. 17 15
349 84.72 wind 5.0 4320 > th dose dependent sin 11 NA
352 84.73 wind 7.0 4320 < th dose independent sin 11 NA
353 84.73 wind 1.0 90 > th dose independent rect. 2 1
365 84.75 wind 7.0 4320 > th dose independent sin 11 NA
372 84.75 wind 1.0 1440 > th dose independent rect. 17 17
374 84.75 wind 1.0 720 > th dose independent rect. 24 20
388 84.79 humidity 70.0 10 > th dose independent rect. 18 4
389 84.79 wind 7.0 4320 > th dose independent rect. 17 15
393 84.80 wind 5.0 10 < th dose independent rect. 2 2
398 84.82 humidity 50.0 90 > th dose dependent rect. 2 1
427 84.87 precipitation 0.1 90 < th dose independent rect. 3 23
428 84.87 precipitation 0.1 90 < th dose dependent rect. 3 23
440 84.90 atmosphere 1000.0 10 > th dose independent rect. 4 22
445 84.92 wind 5.0 14400 < th dose independent rect. 5 2
454 84.93 radiation 1.0 14400 < th dose dependent rect. 19 3
487 84.99 wind 9.0 14400 > th dose dependent rect. 18 19
491 85.01 wind 1.0 1440 < th dose independent sin 7 NA
496 85.01 wind 1.0 1440 < th dose independent rect. 17 18
559 85.10 humidity 70.0 90 > th dose independent rect. 13 15
596 85.16 temperature 30.0 10 < th dose dependent rect. 2 2
604 85.18 wind 1.0 1440 < th dose independent rect. 2 5
621 85.21 precipitation 0.1 10 < th dose independent rect. 2 2
628 85.21 precipitation 0.1 10 < th dose dependent rect. 2 2
635 85.23 temperature 15.0 720 > th dose independent rect. 8 4
643 85.24 humidity 80.0 10 > th dose independent rect. 2 2
653 85.26 temperature 15.0 270 > th dose independent rect. 8 12
657 85.26 wind 1.0 1440 > th dose independent rect. 14 20
689 85.31 radiation 20.0 720 < th dose independent rect. 16 11
705 85.34 temperature 30.0 270 < th dose independent rect. 13 7
714 85.36 humidity 90.0 4320 < th dose independent rect. 17 1
715 85.36 wind 9.0 4320 < th dose independent rect. 3 2
717 85.36 wind 1.0 1440 > th dose independent rect. 3 3
753 85.40 wind 9.0 14400 > th dose dependent rect. 17 21
754 85.41 atmosphere 1000.0 10 > th dose independent rect. 2 2
755 85.41 radiation 30.0 720 < th dose independent rect. 15 6
770 85.43 precipitation 0.1 10 < th dose independent rect. 4 22
771 85.43 temperature 10.0 90 > th dose dependent rect. 2 1
775 85.43 precipitation 0.1 10 < th dose dependent rect. 4 22
797 85.46 wind 1.0 1440 < th dose independent rect. 14 20
809 85.47 temperature 20.0 14400 < th dose dependent rect. 21 1
810 85.47 radiation 20.0 720 < th dose dependent rect. 16 4
822 85.49 temperature 10.0 10 > th dose independent rect. 2 2
824 85.49 temperature 30.0 10 < th dose independent rect. 2 2
825 85.49 humidity 50.0 10 > th dose independent rect. 2 2
829 85.49 atmosphere 1010.0 10 < th dose independent rect. 2 2
831 85.49 radiation 1.0 10 < th dose independent rect. 2 2
846 85.49 temperature 10.0 10 > th dose independent rect. 4 22
847 85.49 humidity 70.0 270 < th dose independent rect. 13 22
848 85.49 radiation 1.0 10 < th dose dependent rect. 2 2
854 85.49 wind 9.0 14400 > th dose dependent rect. 14 21
882 85.51 wind 9.0 10 < th dose dependent rect. 2 2
888 85.52 wind 9.0 14400 > th dose dependent sin 13 NA
890 85.52 wind 3.0 1440 < th dose dependent rect. 3 2
908 85.54 precipitation 0.1 720 < th dose independent rect. 23 22
911 85.54 precipitation 0.1 720 < th dose dependent rect. 23 22
912 85.55 temperature 25.0 10 < th dose independent rect. 19 1
929 85.55 wind 3.0 1440 < th dose dependent rect. 3 4
976 85.59 wind 3.0 1440 < th dose dependent rect. 3 7