BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0250300 Os02g0250300|J075125B17
(600 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0250300 Bromodomain containing protein 811 0.0
Os04g0623100 Bromodomain containing protein 154 3e-37
Os08g0192800 Bromodomain containing protein 150 2e-36
Os04g0622700 Bromodomain containing protein 145 1e-34
Os02g0601800 Bromodomain containing protein 140 3e-33
Os07g0507700 Bromodomain containing protein 136 4e-32
AK105395 135 7e-32
AK111203 116 4e-26
Os01g0648700 Bromodomain containing protein 103 3e-22
AK110437 96 9e-20
Os04g0622000 Conserved hypothetical protein 73 8e-13
>Os02g0250300 Bromodomain containing protein
Length = 600
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/556 (74%), Positives = 414/556 (74%)
Query: 35 TSRWAPEIRVXXXXXXXXXXXXXXXXXXXXXXLAQTLASIRRSIRRPEDGXXXXXXXXXX 94
TSRWAPEIRV LAQTLASIRRSIRRPEDG
Sbjct: 35 TSRWAPEIRVYRRKYPRKNPKPPPNPSPSSSPLAQTLASIRRSIRRPEDGPAAPRPDPPA 94
Query: 95 XXXXXXXXXXXXXXXXXXXXXXXXXXXSDDVSAGPNRDGGAVPNGHGDVXXXXXXXXXXX 154
SDDVSAGPNRDGGAVPNGHGDV
Sbjct: 95 APASSPHPPPPSAPVAPAQQGEPAAPASDDVSAGPNRDGGAVPNGHGDVRAAAEEKARKR 154
Query: 155 XXXXXXXXXXXXELDQVRGLSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYAHSQFA 214
ELDQVRGLSKR GYAHSQFA
Sbjct: 155 RARSELRRQLASELDQVRGLSKRLKAAAEAIAAESAAALALPVVVPPPQLPVGYAHSQFA 214
Query: 215 LADPVTPIPGQVAGAIVPVRSVMQRGPLTVSVTHTESFEKEKRTPKANQLYQNSEFLLAK 274
LADPVTPIPGQVAGAIVPVRSVMQRGPLTVSVTHTESFEKEKRTPKANQLYQNSEFLLAK
Sbjct: 215 LADPVTPIPGQVAGAIVPVRSVMQRGPLTVSVTHTESFEKEKRTPKANQLYQNSEFLLAK 274
Query: 275 DKFPPSDSHGRXXXXXXXXXXRSLASHGAGYDAEQRLYSHAFKKSMSLLSRLMKHKFGWV 334
DKFPPSDSHGR RSLASHGAGYDAEQRLYSHAFKKSMSLLSRLMKHKFGWV
Sbjct: 275 DKFPPSDSHGRKKPKHHKKKHRSLASHGAGYDAEQRLYSHAFKKSMSLLSRLMKHKFGWV 334
Query: 335 FNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHGQYRNPREFADDVRLTFHNAMTYNPK 394
FNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHGQYRNPREFADDVRLTFHNAMTYNPK
Sbjct: 335 FNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHGQYRNPREFADDVRLTFHNAMTYNPK 394
Query: 395 GQDVHFMAEQLLGIFEAQWPEIEAEVQYLASCXXXXXXXXXXXIDVRFLDRSDSVKHHMV 454
GQDVHFMAEQLLGIFEAQWPEIEAEVQYLASC IDVRFLDRSDSVKHHMV
Sbjct: 395 GQDVHFMAEQLLGIFEAQWPEIEAEVQYLASCPPLPNKFPPPPIDVRFLDRSDSVKHHMV 454
Query: 455 LDSKSRPLSHTPTYSARTPSMXXXXXXXXXXRDMTIDEKRKLSNNLQNLPPEKLDVVVQI 514
LDSKSRPLSHTPTYSARTPSM RDMTIDEKRKLSNNLQNLPPEKLDVVVQI
Sbjct: 455 LDSKSRPLSHTPTYSARTPSMKKPKAKDPDKRDMTIDEKRKLSNNLQNLPPEKLDVVVQI 514
Query: 515 IKNKNLSVRQHDDEIEVEIDSMDTETLWELDRFVANYKKNLSKQKRKAERAMLARQDAEL 574
IKNKNLSVRQHDDEIEVEIDSMDTETLWELDRFVANYKKNLSKQKRKAERAMLARQDAEL
Sbjct: 515 IKNKNLSVRQHDDEIEVEIDSMDTETLWELDRFVANYKKNLSKQKRKAERAMLARQDAEL 574
Query: 575 HAQHVAPQQPVWAFNH 590
HAQHVAPQQPVWAFNH
Sbjct: 575 HAQHVAPQQPVWAFNH 590
>Os04g0623100 Bromodomain containing protein
Length = 456
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 134/259 (51%), Gaps = 31/259 (11%)
Query: 310 RLYSHAFKKSMSLLSRLMKHKFGWVFNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHG 369
+L + K+ +L++L K K FN PV+ LGLHDY A+IK PMDLGT++ L G
Sbjct: 115 KLRAAMRKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHDYHAVIKCPMDLGTVRANLAAG 174
Query: 370 QYRNPREFADDVRLTFHNAMTYNPKGQDVHFMAEQLLGIFEA------QWPEIEAEVQYL 423
+Y + +FA DVRLTF NA+ YNP G +VH A LL FE W E E ++
Sbjct: 175 RYPSHDDFAADVRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASMSWFEQELKLLEP 234
Query: 424 ASCXXXXXXXXXXXIDVRFLDRSDSVKHHMVLDSKSRPLSHTPTYSARTPSMXXXXXXXX 483
V+ R+ +VK +P + P
Sbjct: 235 PMPVPPPELPPATA-PVQVKPRAANVKMR-------KPKAREPN---------------- 270
Query: 484 XXRDMTIDEKRKLSNNLQNLPPEKLDVVVQIIKNKNLSVRQHDDEIEVEIDSMDTETLWE 543
RDMT++EK L L++LP EK+ V+QI++ +N + EIE++ID MD ET WE
Sbjct: 271 -KRDMTLEEKNLLRVGLESLPEEKMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWE 329
Query: 544 LDRFVANYKKNLSKQKRKA 562
LDRFV N+KK L+K +R A
Sbjct: 330 LDRFVNNFKKALNKSRRAA 348
>Os08g0192800 Bromodomain containing protein
Length = 481
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 122/244 (50%), Gaps = 16/244 (6%)
Query: 317 KKSMSLLSRLMKHKFGWVFNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHGQYRNPRE 376
K+ +L+RL K K FN PVD L LHDY AII++PMDLGT+K L G+Y +
Sbjct: 139 KRCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRNPMDLGTVKENLAFGRYPSHEA 198
Query: 377 FADDVRLTFHNAMTYNPKGQDVHFMAEQLLGIFEAQWPEIEAEVQYLASCXXXXXXXXXX 436
FA DVRLTF NA+ YNP VH A LL FE + EA + C
Sbjct: 199 FATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLYK--EALSWFEQECQRLEPPMPLA 256
Query: 437 XIDVRFLDRSDSVKHHMVLDSKSRPLSHTPTYSARTPSMXXXXXXXXXXRDMTIDEKRKL 496
++ + R P AR P+ R+M+ +EK KL
Sbjct: 257 LPPPPQPPVPMPMQAPPRIGGGGR----RPKPKAREPN----------KREMSDEEKHKL 302
Query: 497 SNNLQNLPPEKLDVVVQIIKNKNLSVRQHDDEIEVEIDSMDTETLWELDRFVANYKKNLS 556
+ NLP EK+ V+QI++ +N + +E++ D MD ETLWELDRFV N KK LS
Sbjct: 303 RVEIGNLPEEKMGNVLQIVQKRNTDPALMGEVVELDFDEMDVETLWELDRFVVNCKKALS 362
Query: 557 KQKR 560
K +R
Sbjct: 363 KSRR 366
>Os04g0622700 Bromodomain containing protein
Length = 355
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 132/246 (53%), Gaps = 19/246 (7%)
Query: 317 KKSMSLLSRLMKHKFGWVFNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHGQYRNPRE 376
K+ +L++L K K FN PV+ LGL DY A+IK PMDLGT++ L G+Y + +
Sbjct: 3 KRCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSHDD 62
Query: 377 FADDVRLTFHNAMTYNPKGQDVHFMAEQLLGIFEAQWPEIEAEVQYLASCXXXXXXXXXX 436
FA D+RLTF NA+ YNP G +VH A LL FE + +A V +
Sbjct: 63 FAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMY---KASVSWFEQ----------- 108
Query: 437 XIDVRFLDRSDSVKHHMVLDSKSRPLSHTPTYSARTPSMXXXXXXXXXXRDMTIDEKRKL 496
+++ L+ V + +K+ P P A M R+MT++EK L
Sbjct: 109 --ELKILEPPMPVPPPELPPAKA-PAQVKP--RAGNVKMRKTKAREPNKREMTLEEKNLL 163
Query: 497 SNNLQNLPPEKLDVVVQIIKNKNLSVRQHDDEIEVEIDSMDTETLWELDRFVANYKKNLS 556
L++LP EK+ V+QI++ +N + EIE++ID MD ET WELDRFV +KK L+
Sbjct: 164 RVGLESLPEEKMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNKFKKALN 223
Query: 557 KQKRKA 562
K +R A
Sbjct: 224 KSRRAA 229
>Os02g0601800 Bromodomain containing protein
Length = 714
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 126/242 (52%), Gaps = 26/242 (10%)
Query: 316 FKKSMSLLSRLMKHKFGWVFNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHGQYRNPR 375
FK+ ++L +LM K +F+ PVDAV L + DYF IIK PMDLGTI+ +L G Y +P
Sbjct: 168 FKQCDAILKKLMTQKCSNIFDSPVDAVKLNIPDYFQIIKKPMDLGTIRNKLDSGSYTSPS 227
Query: 376 EFADDVRLTFHNAMTYNPKGQDVHFMAEQLLGIFEAQWPEIEAEVQYLASCXXXXXXXXX 435
EFA DVRLTF NAMTYNP+G VH A QL +FE++W IE ++ +A+
Sbjct: 228 EFAADVRLTFSNAMTYNPRGHVVHDYAIQLNKMFESRWRTIEKKLASIAT---------E 278
Query: 436 XXIDVRFLDRSDSVKHHMVLDSKSRPLSHTPTYSARTPSMXXXXXXXXXXRDMTIDEKRK 495
++V DR+DS + K+ P+ + + MT +EK
Sbjct: 279 AHVEV---DRADSKRR------KTPPVDCSEVSTECVRPTESVRPTESVKPKMTFEEKES 329
Query: 496 LSNNLQNL------PPEKLDVVVQIIKNKNLSVRQHDDEIEVEIDSMDTETLWELDRFVA 549
N L +L P +D++ Q I N + D EIE++I ++ + L+EL + V
Sbjct: 330 FGNCLASLSEDPEVPSHIIDLLQQCIDNNTDQL--GDGEIEIDIHAVSDDLLFELKKHVD 387
Query: 550 NY 551
Y
Sbjct: 388 KY 389
>Os07g0507700 Bromodomain containing protein
Length = 484
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 73/97 (75%)
Query: 321 SLLSRLMKHKFGWVFNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHGQYRNPREFADD 380
S+L +LM HK GW+FN PVD V G+ DYF +I++PMDLGT+K +LT QY NP EFA D
Sbjct: 67 SILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNPYEFAAD 126
Query: 381 VRLTFHNAMTYNPKGQDVHFMAEQLLGIFEAQWPEIE 417
VRLTF NAM YNP G DVH +A+QL IF+++W +E
Sbjct: 127 VRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWKLLE 163
>AK105395
Length = 378
Score = 135 bits (341), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 73/97 (75%)
Query: 321 SLLSRLMKHKFGWVFNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHGQYRNPREFADD 380
S+L +LM HK GW+FN PVD V G+ DYF +I++PMDLGT+K +LT QY NP EFA D
Sbjct: 11 SILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQYSNPYEFAAD 70
Query: 381 VRLTFHNAMTYNPKGQDVHFMAEQLLGIFEAQWPEIE 417
VRLTF NAM YNP G DVH +A+QL IF+++W +E
Sbjct: 71 VRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWKLLE 107
>AK111203
Length = 823
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 130/277 (46%), Gaps = 37/277 (13%)
Query: 313 SHAFKKSMSLLSRLMKHKFGWVFNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHGQYR 372
S ++ + + LMKH FN PVD +ALG+ DY+ IIK PMDLGTIK+ + G Y+
Sbjct: 202 SAPLQQCAQIATALMKHPMSPPFNIPVDPLALGIPDYWTIIKEPMDLGTIKSWVDGGAYK 261
Query: 373 NPREFADDVRLTFHNAMTYNPKGQDVHFMAEQLLGIFEAQW---------PEI----EAE 419
+ EFADDVRL + NA+TYN G + MA+ L FE ++ PE
Sbjct: 262 DIHEFADDVRLVWRNALTYNAPGSQISVMAQTLADFFEQKFTVLINRINNPEAVQSSPVA 321
Query: 420 VQYLASCXXXXXXXXXXXIDVRFLDRSDSVKHHM--------VLDSK-----------SR 460
V+ + + +D L R ++ + LD + +
Sbjct: 322 VEPVVTTSPLPVTVQRVEVDPAVLQRRKEMQETLNDLRGLLRSLDKQVTELKKQTANLPQ 381
Query: 461 PLSHTP----TYSARTPSMXXXXXXXXXXRDMTIDEKRKLSNNLQNLPPEKLDVVVQIIK 516
P S P T ++ T + M+ +EK KLS ++ NL E V+ +I+
Sbjct: 382 PPSAKPKARSTRASATRPPPKRRPRDLNLKPMSYEEKCKLSEDINNLNSEHWAGVMAVIE 441
Query: 517 NKNLSVRQHD-DEIEVEIDSMDTETLWELDRFVANYK 552
+ ++D DE+E++ID++D TL L+ F+A +
Sbjct: 442 EEMPQALKNDTDEVELDIDTLDIVTLRRLEAFIAECQ 478
>Os01g0648700 Bromodomain containing protein
Length = 238
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 69/104 (66%)
Query: 315 AFKKSMSLLSRLMKHKFGWVFNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHGQYRNP 374
A + LL +L++H+ GWVF +PVDA AL L DY+ I PMDLGT++ RL +Y +P
Sbjct: 52 ALLRCGKLLDKLLEHEDGWVFAEPVDARALRLVDYYLRISDPMDLGTVRRRLERRRYADP 111
Query: 375 REFADDVRLTFHNAMTYNPKGQDVHFMAEQLLGIFEAQWPEIEA 418
FA DVRLTF+NAM+YN G V+ A +L IFEA WP + A
Sbjct: 112 WAFAADVRLTFNNAMSYNSAGDPVYESAAELSEIFEAGWPSVLA 155
>AK110437
Length = 434
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 58/92 (63%)
Query: 327 MKHKFGWVFNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHGQYRNPREFADDVRLTFH 386
MKHK+ + FN+PVD VAL L Y +IK PMDLGT+K RL Y F DV+L +H
Sbjct: 1 MKHKWAFPFNQPVDYVALNLPTYPQVIKQPMDLGTVKQRLADNYYETVEAFDADVQLVWH 60
Query: 387 NAMTYNPKGQDVHFMAEQLLGIFEAQWPEIEA 418
NAMT+N G DVH MA+ L G F+ +I A
Sbjct: 61 NAMTFNAAGHDVHIMAKTLKGEFDEGLKKIMA 92
>Os04g0622000 Conserved hypothetical protein
Length = 338
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 487 DMTIDEKRKLSNNLQNLPPEKLDVVVQIIKNKNLSVRQHDDEIEVEIDSMDTETLWELDR 546
++T++EK L L++LP +K+ V+QI++ +N + EIE++ID MD ET WELDR
Sbjct: 158 EITLEEKNLLRVGLESLPEKKMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWELDR 217
Query: 547 FVANYKKNLSKQKRKA 562
FV N+KK L+K +R A
Sbjct: 218 FVNNFKKALNKSRRAA 233
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,312,100
Number of extensions: 473632
Number of successful extensions: 1173
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 1170
Number of HSP's successfully gapped: 14
Length of query: 600
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 493
Effective length of database: 11,448,903
Effective search space: 5644309179
Effective search space used: 5644309179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)