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Os04g0623100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Bromodomain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0268) R2 : 0.838
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.04 (0.0631) R2dE : 0.831 R2E : 0.823
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.315 (0.0563) R2dN8 : 0.0142 R2N8 : 0.00696
σ : 0.503
deviance : 116.53
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C
peak time of C : --
E
wheather : radiation
threshold : 3.856
memory length : 294
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 3.19
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
86.46 0.437 12.2 0.491 2.28 -1.76 -1.47 -2.73 0.383 15.1 0.244 216 20.4 --
95.43 0.455 12.2 0.578 2.34 -1.6 -0.412 -- 0.343 15.2 1.234 181 20.6 --
91.49 0.445 12.2 0.495 2.27 -1.73 -- -1.88 0.372 15.2 0.3002 196 20.2 --
95.8 0.456 12.2 0.551 2.33 -1.54 -- -- 0.354 15.2 1.48 175 20.7 --
108.21 0.484 12.2 0.559 -- -3.13 -- 0.0999 0.311 -- 2.954 301 3.12 --
134.05 0.543 12.2 0.608 3.21 -- 0.113 -- 0.393 15.7 -- -- -- --
134.09 0.542 12.2 0.609 3.21 -- -- -- 0.394 15.6 -- -- -- --
106.71 0.481 12.2 0.665 -- -3.03 -- -- 0.4 -- 8.915 264 3.14 --
102.83 0.472 12.2 -- 2.41 -1.62 -- -- 0.326 15.2 0.3519 194 20.3 --
706.14 1.24 12.2 0.475 -- -- -- -- 0.309 -- -- -- -- --
143.88 0.561 12.2 -- 3.2 -- -- -- 0.326 15.7 -- -- -- --
116.53 0.503 12.2 -- -- -3.04 -- -- 0.315 -- 3.856 294 3.19 --
712.1 1.25 12.2 -- -- -- -- -- 0.256 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.06 wind 7.0 30 < th dose dependent rect. 3 4
2 77.22 precipitation 0.1 10 < th dose independent rect. 3 4
3 77.22 precipitation 0.1 10 < th dose dependent rect. 3 4
8 77.85 wind 5.0 10 < th dose independent rect. 3 4
12 78.09 temperature 10.0 10 > th dose dependent rect. 7 20
26 79.12 radiation 10.0 90 < th dose independent rect. 3 4
28 79.22 precipitation 0.1 10 < th dose independent rect. 7 20
29 79.22 precipitation 0.1 10 < th dose dependent rect. 7 20
32 79.40 radiation 30.0 90 < th dose dependent rect. 3 4
38 79.75 wind 9.0 10 < th dose independent rect. 7 20
45 80.05 wind 9.0 90 < th dose independent rect. 6 21
47 80.07 temperature 10.0 10 > th dose independent rect. 3 4
49 80.07 temperature 30.0 10 < th dose independent rect. 3 4
50 80.07 humidity 50.0 10 > th dose independent rect. 3 4
53 80.07 atmosphere 995.0 10 > th dose independent rect. 3 4
54 80.07 atmosphere 1015.0 10 < th dose independent rect. 3 4
55 80.07 radiation 20.0 10 < th dose independent rect. 3 4
58 80.07 temperature 10.0 10 > th dose independent rect. 7 20
60 80.09 humidity 70.0 90 > th dose independent rect. 3 4
105 80.66 precipitation 0.1 270 < th dose independent rect. 1 4
106 80.66 precipitation 0.1 270 < th dose dependent rect. 1 4
116 81.31 humidity 50.0 90 > th dose dependent rect. 3 4
119 81.39 wind 5.0 270 < th dose independent rect. 1 4
131 82.43 atmosphere 1015.0 10 < th dose independent rect. 7 20
132 82.47 radiation 1.0 270 < th dose independent rect. 1 4
134 82.47 radiation 10.0 270 < th dose dependent rect. 1 4
139 82.50 temperature 10.0 270 > th dose independent rect. 1 4
141 82.50 temperature 30.0 270 < th dose independent rect. 1 4
142 82.50 humidity 50.0 270 > th dose independent rect. 1 4
145 82.50 atmosphere 995.0 270 > th dose independent rect. 1 4
146 82.50 atmosphere 1010.0 270 < th dose independent rect. 1 4
161 82.86 temperature 10.0 10 > th dose dependent rect. 3 4
164 82.90 temperature 10.0 90 > th dose dependent rect. 3 3
177 83.43 wind 9.0 270 < th dose independent rect. 4 22
197 83.53 temperature 10.0 270 > th dose independent rect. 4 22
198 83.53 radiation 1.0 270 < th dose dependent rect. 2 2
206 83.63 wind 9.0 1440 < th dose independent rect. 4 4
207 83.63 temperature 10.0 1440 > th dose independent rect. 4 4
210 83.63 temperature 30.0 1440 < th dose independent rect. 4 4
214 83.63 humidity 50.0 1440 > th dose independent rect. 4 4
219 83.63 atmosphere 995.0 1440 > th dose independent rect. 4 4
220 83.63 atmosphere 1015.0 1440 < th dose independent rect. 4 4
221 83.63 temperature 10.0 1440 > th dose independent rect. 8 20
236 84.20 atmosphere 995.0 10 > th dose independent rect. 7 20
240 84.34 wind 1.0 270 > th dose independent rect. 2 2
344 85.77 humidity 50.0 270 > th dose dependent rect. 1 4
346 85.80 precipitation 0.1 270 < th dose independent rect. 1 14
347 85.80 precipitation 0.1 270 < th dose dependent rect. 1 14
348 85.83 precipitation 0.1 270 < th dose independent rect. 4 22
349 85.83 precipitation 0.1 270 < th dose dependent rect. 4 22
350 85.85 radiation 1.0 270 < th dose dependent rect. 1 17
402 86.28 atmosphere 1015.0 90 < th dose dependent rect. 3 3
466 86.99 temperature 10.0 270 > th dose dependent rect. 17 8
467 87.02 atmosphere 995.0 10 > th dose dependent rect. 3 4
481 87.26 precipitation 0.1 270 < th dose independent rect. 15 10
483 87.26 precipitation 0.1 270 < th dose dependent rect. 15 10
500 87.54 atmosphere 995.0 90 > th dose dependent rect. 3 3
534 87.83 radiation 1.0 270 < th dose dependent rect. 1 10
595 88.16 wind 9.0 270 < th dose independent rect. 15 10
618 88.40 temperature 10.0 270 > th dose independent rect. 15 10
619 88.40 temperature 10.0 270 > th dose independent rect. 1 14
620 88.40 atmosphere 1015.0 270 < th dose independent rect. 1 14
630 88.54 atmosphere 995.0 270 > th dose independent rect. 1 14
631 88.57 radiation 40.0 270 < th dose independent rect. 15 10
637 88.66 radiation 1.0 270 < th dose independent rect. 1 17
645 88.80 wind 9.0 270 < th dose independent rect. 1 14
646 88.86 temperature 30.0 90 < th dose dependent rect. 3 3
691 89.36 radiation 40.0 1440 < th dose independent rect. 4 4
694 89.39 radiation 40.0 90 < th dose independent rect. 7 20
707 89.53 radiation 1.0 270 < th dose independent rect. 1 10
774 90.00 wind 9.0 30 < th dose dependent rect. 7 20
789 90.24 radiation 40.0 270 < th dose dependent rect. 15 14
942 91.41 temperature 30.0 270 < th dose dependent rect. 1 3
954 91.61 wind 1.0 30 > th dose independent rect. 7 20
990 92.20 atmosphere 1015.0 270 < th dose dependent rect. 1 4