BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0623100 Os04g0623100|AK067276
(456 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0623100 Bromodomain containing protein 831 0.0
Os04g0622700 Bromodomain containing protein 570 e-163
Os08g0192800 Bromodomain containing protein 392 e-109
Os04g0622000 Conserved hypothetical protein 281 5e-76
Os02g0250300 Bromodomain containing protein 152 7e-37
Os02g0601800 Bromodomain containing protein 126 4e-29
AK105395 94 2e-19
Os07g0507700 Bromodomain containing protein 94 2e-19
Os01g0648700 Bromodomain containing protein 82 7e-16
AK111203 80 3e-15
AK110437 75 1e-13
>Os04g0623100 Bromodomain containing protein
Length = 456
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/456 (90%), Positives = 411/456 (90%)
Query: 1 MASALLAGRGGVNXXXXXXQWGETRAPLAPVAPNSDPNHPLQQRANGSATRPPPSSYVAL 60
MASALLAGRGGVN QWGETRAPLAPVAPNSDPNHPLQQRANGSATRPPPSSYVAL
Sbjct: 1 MASALLAGRGGVNHHHHHHQWGETRAPLAPVAPNSDPNHPLQQRANGSATRPPPSSYVAL 60
Query: 61 RPGAMAHREARALRDRLAGELGQVRALIARIDTWQQGQVKRHGSPRRDLPTPPAKLRAAM 120
RPGAMAHREARALRDRLAGELGQVRALIARIDTWQQGQVKRHGSPRRDLPTPPAKLRAAM
Sbjct: 61 RPGAMAHREARALRDRLAGELGQVRALIARIDTWQQGQVKRHGSPRRDLPTPPAKLRAAM 120
Query: 121 RKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHDYHAVIKCPMDLGTVRANLAAGRYPSHD 180
RKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHDYHAVIKCPMDLGTVRANLAAGRYPSHD
Sbjct: 121 RKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHDYHAVIKCPMDLGTVRANLAAGRYPSHD 180
Query: 181 DFAADVRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASMSWFEQXXXXXXXXXXXXX 240
DFAADVRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASMSWFEQ
Sbjct: 181 DFAADVRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASMSWFEQELKLLEPPMPVPP 240
Query: 241 XXXXXATAPVQVKPRAANVKMRKPKAREPNKRDMTLEEKNLLRVGLESLPEEKMHNVLQI 300
ATAPVQVKPRAANVKMRKPKAREPNKRDMTLEEKNLLRVGLESLPEEKMHNVLQI
Sbjct: 241 PELPPATAPVQVKPRAANVKMRKPKAREPNKRDMTLEEKNLLRVGLESLPEEKMHNVLQI 300
Query: 301 VRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNNFKKALNKSRRAAIVNGENADVIDA 360
VRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNNFKKALNKSRRAAIVNGENADVIDA
Sbjct: 301 VRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNNFKKALNKSRRAAIVNGENADVIDA 360
Query: 361 SVANDSDMLVNGSTATMVDNGDVTMAIESKDPDKITTQAEQLDEYVDIGDEMPTATYQSV 420
SVANDSDMLVNGSTATMVDNGDVTMAIESKDPDKITTQAEQLDEYVDIGDEMPTATYQSV
Sbjct: 361 SVANDSDMLVNGSTATMVDNGDVTMAIESKDPDKITTQAEQLDEYVDIGDEMPTATYQSV 420
Query: 421 EIEKDTEAAXXXXXXXXXXXXXXXXXXXXXNAHSLV 456
EIEKDTEAA NAHSLV
Sbjct: 421 EIEKDTEAASSGSSSSSDSGSSKDSVSESGNAHSLV 456
>Os04g0622700 Bromodomain containing protein
Length = 355
Score = 570 bits (1469), Expect = e-163, Method: Compositional matrix adjust.
Identities = 287/355 (80%), Positives = 292/355 (82%), Gaps = 18/355 (5%)
Query: 120 MRKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHDYHAVIKCPMDLGTVRANLAAGRYPSH 179
MRKRC+QILAKLRKDKRSIWFNAPVEVDRLGL DYHAVIKCPMDLGTVRANLAAGRYPSH
Sbjct: 1 MRKRCDQILAKLRKDKRSIWFNAPVEVDRLGLQDYHAVIKCPMDLGTVRANLAAGRYPSH 60
Query: 180 DDFAADVRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASMSWFEQXXXXXXXXXXXX 239
DDFAAD+RLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKAS+SWFEQ
Sbjct: 61 DDFAADIRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASVSWFEQELKILEPPMPVP 120
Query: 240 XXXXXXATAPVQVKPRAANVKMRKPKAREPNKRDMTLEEKNLLRVGLESLPEEKMHNVLQ 299
A AP QVKPRA NVKMRK KAREPNKR+MTLEEKNLLRVGLESLPEEKMHNVLQ
Sbjct: 121 PPELPPAKAPAQVKPRAGNVKMRKTKAREPNKREMTLEEKNLLRVGLESLPEEKMHNVLQ 180
Query: 300 IVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNNFKKALNKSRRAAIVNGENADVID 359
IVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVN FKKALNKSRRAAIVNGENADVID
Sbjct: 181 IVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNKFKKALNKSRRAAIVNGENADVID 240
Query: 360 ASVANDSDMLVNGSTATMVDNGDVTMAIESKDPDKITTQAEQLDEY-------------- 405
ASVANDSDMLVNGSTATMVDNGDVTMAIESKDPDKITTQAEQLDEY
Sbjct: 241 ASVANDSDMLVNGSTATMVDNGDVTMAIESKDPDKITTQAEQLDEYVDAVADPEFLSWPW 300
Query: 406 ----VDIGDEMPTATYQSVEIEKDTEAAXXXXXXXXXXXXXXXXXXXXXNAHSLV 456
VD+GDEMPTATYQSVEIEKDTEAA NAHSLV
Sbjct: 301 VRPCVDVGDEMPTATYQSVEIEKDTEAASSGSSSSSDSGSSKDSVSESGNAHSLV 355
>Os08g0192800 Bromodomain containing protein
Length = 481
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 223/450 (49%), Positives = 281/450 (62%), Gaps = 27/450 (6%)
Query: 1 MASALLAGRGGVNXXXXXXQWGETRAPLAP---VAPNSDPNHPLQQRANG---------- 47
M SA+LAGR V+ W + R PL P PN +H
Sbjct: 1 MTSAVLAGRNEVHHHHHH-HWADARVPLMPKHATNPNPRRHHRPSPSIPPPPPPQRPPAA 59
Query: 48 ----SATRPPPSSYVALRPGAMAHREARALRDRLAGELGQVRALIARIDTWQQGQVKRHG 103
S P PS +V +RP ++ REA+ LR RL GEL +VRAL++ ID W+ + +
Sbjct: 60 TVAPSVPDPSPSGHVTIRPSELSRREAQVLRARLTGELSRVRALLSDIDGWEARRRRPAE 119
Query: 104 SP-RRDLPTPPAKLRAAMRKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHDYHAVIKCPM 162
P +R +PP L+AAMRKRC QIL +LRK K S+WFN+PV+V+RL LHDYHA+I+ PM
Sbjct: 120 PPRQRGHVSPPPALQAAMRKRCTQILTRLRKQKISVWFNSPVDVERLKLHDYHAIIRNPM 179
Query: 163 DLGTVRANLAAGRYPSHDDFAADVRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASM 222
DLGTV+ NLA GRYPSH+ FA DVRLTFSNALRYNPA H VH +A +LLA+FE +YK ++
Sbjct: 180 DLGTVKENLAFGRYPSHEAFATDVRLTFSNALRYNPADHHVHRYASNLLATFEGLYKEAL 239
Query: 223 SWFEQXXX--XXXXXXXXXXXXXXXATAPVQVKPRAANVKMR-KPKAREPNKRDMTLEEK 279
SWFEQ P+Q PR R KPKAREPNKR+M+ EEK
Sbjct: 240 SWFEQECQRLEPPMPLALPPPPQPPVPMPMQAPPRIGGGGRRPKPKAREPNKREMSDEEK 299
Query: 280 NLLRVGLESLPEEKMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNNFKK 339
+ LRV + +LPEEKM NVLQIV+KRN +P L+G +ELD DEMDVET WELDRFV N KK
Sbjct: 300 HKLRVEIGNLPEEKMGNVLQIVQKRNTDPALMGEVVELDFDEMDVETLWELDRFVVNCKK 359
Query: 340 ALNKSRRAAIVNGENADVIDASVANDSDMLVN-GSTATMVDNGDVTMAIESKDPDKITTQ 398
AL+KSRR +NG+ D D + VN ++V+ GD E+ P+K ++
Sbjct: 360 ALSKSRRTVAMNGDAVDATAIVPTEDDTVQVNVHHQPSVVEIGDS----ENDTPEKRVSE 415
Query: 399 AEQLDEYVDIGDEMPTATYQSVEIEKDTEA 428
+ +DEYVDIGDEMPTA YQSVEIE+D +
Sbjct: 416 VDMVDEYVDIGDEMPTANYQSVEIERDAQV 445
>Os04g0622000 Conserved hypothetical protein
Length = 338
Score = 281 bits (720), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 139/146 (95%), Positives = 143/146 (97%)
Query: 271 KRDMTLEEKNLLRVGLESLPEEKMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWEL 330
K ++TLEEKNLLRVGLESLPE+KMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWEL
Sbjct: 156 KWEITLEEKNLLRVGLESLPEKKMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWEL 215
Query: 331 DRFVNNFKKALNKSRRAAIVNGENADVIDASVANDSDMLVNGSTATMVDNGDVTMAIESK 390
DRFVNNFKKALNKSRRAAIVNGENADVIDASVANDS +LVNGSTATMVDNGDV MAIESK
Sbjct: 216 DRFVNNFKKALNKSRRAAIVNGENADVIDASVANDSYVLVNGSTATMVDNGDVAMAIESK 275
Query: 391 DPDKITTQAEQLDEYVDIGDEMPTAT 416
DPDKITTQAEQLDEYVDIGDEMPTAT
Sbjct: 276 DPDKITTQAEQLDEYVDIGDEMPTAT 301
>Os02g0250300 Bromodomain containing protein
Length = 600
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 139/253 (54%), Gaps = 19/253 (7%)
Query: 115 KLRAAMRKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHDYHAVIKCPMDLGTVRANLAAG 174
+L + K+ +L++L K K FN PV+ LGLHDY A+IK PMDLGT++ L G
Sbjct: 310 RLYSHAFKKSMSLLSRLMKHKFGWVFNKPVDAVALGLHDYFAIIKHPMDLGTIKTRLTHG 369
Query: 175 RYPSHDDFAADVRLTFSNALRYNPAGHEVHTFAGDLLASFEKMY---KASMSWFEQXXXX 231
+Y + +FA DVRLTF NA+ YNP G +VH A LL FE + +A + +
Sbjct: 370 QYRNPREFADDVRLTFHNAMTYNPKGQDVHFMAEQLLGIFEAQWPEIEAEVQYLASCPPL 429
Query: 232 XX--------------XXXXXXXXXXXXATAPVQVKP--RAANVKMRKPKAREPNKRDMT 275
+ P+ P A M+KPKA++P+KRDMT
Sbjct: 430 PNKFPPPPIDVRFLDRSDSVKHHMVLDSKSRPLSHTPTYSARTPSMKKPKAKDPDKRDMT 489
Query: 276 LEEKNLLRVGLESLPEEKMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVN 335
++EK L L++LP EK+ V+QI++ +N + EIE++ID MD ET WELDRFV
Sbjct: 490 IDEKRKLSNNLQNLPPEKLDVVVQIIKNKNLSVRQHDDEIEVEIDSMDTETLWELDRFVA 549
Query: 336 NFKKALNKSRRAA 348
N+KK L+K +R A
Sbjct: 550 NYKKNLSKQKRKA 562
>Os02g0601800 Bromodomain containing protein
Length = 714
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/334 (31%), Positives = 151/334 (45%), Gaps = 49/334 (14%)
Query: 62 PGAMAHREARALRDRLAGELGQVRALIARIDT-------------------WQQGQVKRH 102
P M+ E R LR R EL VR L+ + + ++GQ H
Sbjct: 81 PAKMSSSERRHLRKRFRTELDSVRNLLKKPEFAVPVPVNRAPALSSSAAPRGKKGQRGNH 140
Query: 103 ---GSPRRDLPTPP------AKLRAAMRKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHD 153
G+ R LPT P A+ K+C+ IL KL K S F++PV+ +L + D
Sbjct: 141 VVRGAKGRFLPTKPRPEASTVLTEDAIFKQCDAILKKLMTQKCSNIFDSPVDAVKLNIPD 200
Query: 154 YHAVIKCPMDLGTVRANLAAGRYPSHDDFAADVRLTFSNALRYNPAGHEVHTFAGDLLAS 213
Y +IK PMDLGT+R L +G Y S +FAADVRLTFSNA+ YNP GH VH +A L
Sbjct: 201 YFQIIKKPMDLGTIRNKLDSGSYTSPSEFAADVRLTFSNAMTYNPRGHVVHDYAIQLNKM 260
Query: 214 FEKMYK---------ASMSWFEQXXXXXXXXXXXXXXXXXXATAPVQVKPRAANVKMRKP 264
FE ++ A+ + E +T V+ + KP
Sbjct: 261 FESRWRTIEKKLASIATEAHVEVDRADSKRRKTPPVDCSEVSTECVRPTESVRPTESVKP 320
Query: 265 KAREPNKRDMTLEEKNLLRVGLESLPE--EKMHNVLQIVRK--RNGNPELVGGEIELDID 320
K MT EEK L SL E E +++ ++++ N +L GEIE+DI
Sbjct: 321 K--------MTFEEKESFGNCLASLSEDPEVPSHIIDLLQQCIDNNTDQLGDGEIEIDIH 372
Query: 321 EMDVETQWELDRFVNNFKKALNKSRRAAIVNGEN 354
+ + +EL + V+ + + +S++A EN
Sbjct: 373 AVSDDLLFELKKHVDKYLQEREQSQQAKSEPSEN 406
>AK105395
Length = 378
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 64/104 (61%)
Query: 116 LRAAMRKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHDYHAVIKCPMDLGTVRANLAAGR 175
+ + ++C IL KL K FN PV+ G+ DY VI+ PMDLGTV+ L + +
Sbjct: 1 MNTSKSRQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQ 60
Query: 176 YPSHDDFAADVRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYK 219
Y + +FAADVRLTFSNA++YNP G++VH A L F+ +K
Sbjct: 61 YSNPYEFAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWK 104
>Os07g0507700 Bromodomain containing protein
Length = 484
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 64/104 (61%)
Query: 116 LRAAMRKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHDYHAVIKCPMDLGTVRANLAAGR 175
+ + ++C IL KL K FN PV+ G+ DY VI+ PMDLGTV+ L + +
Sbjct: 57 MNTSKSRQCGSILKKLMDHKSGWIFNTPVDPVVYGIPDYFDVIRNPMDLGTVKRKLTSKQ 116
Query: 176 YPSHDDFAADVRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYK 219
Y + +FAADVRLTFSNA++YNP G++VH A L F+ +K
Sbjct: 117 YSNPYEFAADVRLTFSNAMKYNPPGNDVHGIADQLNKIFDSEWK 160
>Os01g0648700 Bromodomain containing protein
Length = 238
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 96/229 (41%), Gaps = 46/229 (20%)
Query: 113 PAKLRAAMRKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHDYHAVIKCPMDLGTVRANLA 172
PA L A+ RC ++L KL + + F PV+ L L DY+ I PMDLGTVR L
Sbjct: 46 PADLGDALL-RCGKLLDKLLEHEDGWVFAEPVDARALRLVDYYLRISDPMDLGTVRRRLE 104
Query: 173 AGRYPSHDDFAADVRLTFSNALRYNPAGHEVHTFAGDLLASFEKMYKASMSWFEQXXXXX 232
RY FAADVRLTF+NA+ YN AG V+ A +L FE W
Sbjct: 105 RRRYADPWAFAADVRLTFNNAMSYNSAGDPVYESAAELSEIFEA------GW-------- 150
Query: 233 XXXXXXXXXXXXXATAPVQVKPRAANVKMRKPKAREPNKRDMTLEEKNLLRVGLESLPEE 292
P R P A E K L L LP
Sbjct: 151 ---------------------PSVLAAPPRPPDA----------ERKRRLSGLLPRLPVG 179
Query: 293 KMHNVLQIVRKRNGNPELVGGEIELDIDEMDVETQWELDRFVNNFKKAL 341
V +I++KR+G V G +E+D+D D T ELDR V AL
Sbjct: 180 AQVTVAEIMKKRDGCLREVNGMMEVDLDRADSATLDELDRMVAEHGAAL 228
>AK111203
Length = 823
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 57/101 (56%)
Query: 118 AAMRKRCEQILAKLRKDKRSIWFNAPVEVDRLGLHDYHAVIKCPMDLGTVRANLAAGRYP 177
+A ++C QI L K S FN PV+ LG+ DY +IK PMDLGT+++ + G Y
Sbjct: 202 SAPLQQCAQIATALMKHPMSPPFNIPVDPLALGIPDYWTIIKEPMDLGTIKSWVDGGAYK 261
Query: 178 SHDDFAADVRLTFSNALRYNPAGHEVHTFAGDLLASFEKMY 218
+FA DVRL + NAL YN G ++ A L FE+ +
Sbjct: 262 DIHEFADDVRLVWRNALTYNAPGSQISVMAQTLADFFEQKF 302
>AK110437
Length = 434
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 133 KDKRSIWFNAPVEVDRLGLHDYHAVIKCPMDLGTVRANLAAGRYPSHDDFAADVRLTFSN 192
K K + FN PV+ L L Y VIK PMDLGTV+ LA Y + + F ADV+L + N
Sbjct: 2 KHKWAFPFNQPVDYVALNLPTYPQVIKQPMDLGTVKQRLADNYYETVEAFDADVQLVWHN 61
Query: 193 ALRYNPAGHEVHTFAGDLLASFEKMYKASMS 223
A+ +N AGH+VH A L F++ K M+
Sbjct: 62 AMTFNAAGHDVHIMAKTLKGEFDEGLKKIMA 92
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.130 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,648,436
Number of extensions: 610351
Number of successful extensions: 2483
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 2480
Number of HSP's successfully gapped: 12
Length of query: 456
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 352
Effective length of database: 11,605,545
Effective search space: 4085151840
Effective search space used: 4085151840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)