BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0716000 Os06g0716000|AK067426
(597 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0716000 Protein of unknown function DUF668 family protein 1181 0.0
Os05g0430300 Protein of unknown function DUF668 family protein 449 e-126
Os02g0551700 Protein of unknown function DUF668 family protein 182 5e-46
Os01g0873900 Conserved hypothetical protein 118 2e-26
Os11g0180100 Conserved hypothetical protein 110 2e-24
Os03g0858600 Protein of unknown function DUF668 family protein 95 1e-19
Os04g0433600 Protein of unknown function DUF668 family protein 93 5e-19
Os04g0169500 Protein of unknown function DUF668 family protein 69 1e-11
Os12g0146500 Protein of unknown function DUF668 family protein 68 2e-11
>Os06g0716000 Protein of unknown function DUF668 family protein
Length = 597
Score = 1181 bits (3054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/597 (95%), Positives = 571/597 (95%)
Query: 1 MGCVCSRRFRDDAAPRSVQPLXXXXXXXXXXXXPGDFDSGELAIPPPKLLTSHKVPETGT 60
MGCVCSRRFRDDAAPRSVQPL PGDFDSGELAIPPPKLLTSHKVPETGT
Sbjct: 1 MGCVCSRRFRDDAAPRSVQPLAAAYEARRGRYGPGDFDSGELAIPPPKLLTSHKVPETGT 60
Query: 61 LLGRASIAAVEVLDTLGSSMTNLNHGSGFLSGGTNRGNRVCILAFEVANTIAKASNLWRS 120
LLGRASIAAVEVLDTLGSSMTNLNHGSGFLSGGTNRGNRVCILAFEVANTIAKASNLWRS
Sbjct: 61 LLGRASIAAVEVLDTLGSSMTNLNHGSGFLSGGTNRGNRVCILAFEVANTIAKASNLWRS 120
Query: 121 CSDTSIKELKEEILRSDGVQILVSSNSSELLYIAYVDKRDELDIFSREVIRFGNLCKDPT 180
CSDTSIKELKEEILRSDGVQILVSSNSSELLYIAYVDKRDELDIFSREVIRFGNLCKDPT
Sbjct: 121 CSDTSIKELKEEILRSDGVQILVSSNSSELLYIAYVDKRDELDIFSREVIRFGNLCKDPT 180
Query: 181 WHNLGRYFNKLTTDFAPQDHSKEHMETTIQQLINLAQNTSELYHELHALDRFEQDFQRKF 240
WHNLGRYFNKLTTDFAPQDHSKEHMETTIQQLINLAQNTSELYHELHALDRFEQDFQRKF
Sbjct: 181 WHNLGRYFNKLTTDFAPQDHSKEHMETTIQQLINLAQNTSELYHELHALDRFEQDFQRKF 240
Query: 241 HEEESVPAARRESVMILHSELKRQRKLVKTLKKKSLWSRTLETIVEKLVDIVVFLHKQIR 300
HEEESVPAARRESVMILHSELKRQRKLVKTLKKKSLWSRTLETIVEKLVDIVVFLHKQIR
Sbjct: 241 HEEESVPAARRESVMILHSELKRQRKLVKTLKKKSLWSRTLETIVEKLVDIVVFLHKQIR 300
Query: 301 DSFSEAVSVGADLFNSEQAQNKRLGSCGLALHYANIINQIENIVSRPLSLPPSARDNLYH 360
DSFSEAVSVGADLFNSEQAQNKRLGSCGLALHYANIINQIENIVSRPLSLPPSARDNLYH
Sbjct: 301 DSFSEAVSVGADLFNSEQAQNKRLGSCGLALHYANIINQIENIVSRPLSLPPSARDNLYH 360
Query: 361 GLPVTVKSALRSRLQSVNAQEERTVAQIKAEMQKTLRWILPIAENTIRAHQGFGWVGEWA 420
GLPVTVKSALRSRLQSVNAQEERTVAQIKAEMQKTLRWILPIAENTIRAHQGFGWVGEWA
Sbjct: 361 GLPVTVKSALRSRLQSVNAQEERTVAQIKAEMQKTLRWILPIAENTIRAHQGFGWVGEWA 420
Query: 421 NLGCEMNKKSGSQLSITRVQTLHYADKAKTEQYMXXXXXXXXXXXXXXKNRGYGSKSSKH 480
NLGCEMNKKSGSQLSITRVQTLHYADKAKTEQYM KNRGYGSKSSKH
Sbjct: 421 NLGCEMNKKSGSQLSITRVQTLHYADKAKTEQYMLDLVVLLHHLVVQVKNRGYGSKSSKH 480
Query: 481 DQSRSRKGMDLQPESKLNTSPVNNATYPSPLSESERETLDHLSFKRTGYGRSKSCEPPPN 540
DQSRSRKGMDLQPESKLNTSPVNNATYPSPLSESERETLDHLSFKRTGYGRSKSCEPPPN
Sbjct: 481 DQSRSRKGMDLQPESKLNTSPVNNATYPSPLSESERETLDHLSFKRTGYGRSKSCEPPPN 540
Query: 541 RGKKAHRTWDSCRSHGSSPAREFGRNSASELDKTMDLDVIDGLDRLTSYHPTSPTFC 597
RGKKAHRTWDSCRSHGSSPAREFGRNSASELDKTMDLDVIDGLDRLTSYHPTSPTFC
Sbjct: 541 RGKKAHRTWDSCRSHGSSPAREFGRNSASELDKTMDLDVIDGLDRLTSYHPTSPTFC 597
>Os05g0430300 Protein of unknown function DUF668 family protein
Length = 640
Score = 449 bits (1155), Expect = e-126, Method: Compositional matrix adjust.
Identities = 264/554 (47%), Positives = 357/554 (64%), Gaps = 40/554 (7%)
Query: 54 KVPETGTLLGRASIA----AVEVLDTLGSSMTNLNHGSGFLSGGTNRGNRVCILAFEVAN 109
KV E +LLGRA AVEVLDTLGSSM++LN SGF+S +G+++ ILAFEVAN
Sbjct: 103 KVSEVSSLLGRAGTVGLGKAVEVLDTLGSSMSSLNTSSGFISAA--KGDKISILAFEVAN 160
Query: 110 TIAKASNLWRSCSDTSIKELKEEILRSDGVQILVSSNSSELLYIAYVDKRDELDIFSREV 169
TI K SNL R+ S T+IK LKE +L S+GVQ L+S + EL IA DKR+EL+IFS+EV
Sbjct: 161 TIVKGSNLMRALSKTNIKHLKEVVLYSEGVQHLISKDMDELHKIAATDKREELEIFSKEV 220
Query: 170 IRFGNLCKDPTWHNLGRYFNKLTTDFAPQDHSKEHMETTIQQLINLAQNTSELYHELHAL 229
+RFGN CK+P WH+L RYF KL ++ PQ KE E+ +QQLI Q T+ELYHELH L
Sbjct: 221 VRFGNRCKNPQWHSLDRYFEKLASERTPQHRLKEDAESVMQQLIICVQYTAELYHELHTL 280
Query: 230 DRFEQDFQRKFHEEESVPAARRESVMILHSELKRQRKLVKTLKKKSLWSRTLETIVEKLV 289
DRFEQD +RK E + + +R +S+ +L ++K Q K VK+LKK+SLWS+ LE ++EKLV
Sbjct: 281 DRFEQDCRRKQQELDGL-GSRGDSLHMLKQDVKSQTKHVKSLKKRSLWSKNLEEVMEKLV 339
Query: 290 DIVVFLHKQIRDSFSEAVSVGADLFNSEQAQ-----NKRLGSCGLALHYANIINQIENIV 344
DIV FLH +I ++F L +SE Q + RLG GLALHYANIINQI+ +V
Sbjct: 340 DIVHFLHLEINNAFG--------LADSEAPQEPAKHHNRLGPAGLALHYANIINQIDTLV 391
Query: 345 SRPLSLPPSARDNLYHGLPVTVKSALRSRLQSVNAQEERTVAQIKAEMQKTLRWILPIAE 404
SR +PP+ RD LY GLP+T+KSALRS+LQS +EE T +QIKAEM+KTLRW++PIA
Sbjct: 392 SRSSLIPPTTRDTLYQGLPLTIKSALRSKLQSFELKEELTASQIKAEMEKTLRWLVPIAN 451
Query: 405 NTIRAHQGFGWVGEWANLGCEMNKKSGSQLSITRVQTLHYADKAKTEQYMXXXXXXXXXX 464
NT +AH GFGWVGEWAN G E+N K Q+ +TR++TL++A+K K + ++
Sbjct: 452 NTTKAHHGFGWVGEWANTGSELNCKLSGQMDLTRIETLYHAEKEKVDGHILELVVWLHHL 511
Query: 465 XXXXKNRGYGSKSSKHDQSRS--RKGMDLQPESKLNTSPVNNATYPSPLSESERETLDHL 522
KN G +S RS +KG+ L P+ ++SP+ L++ +++ L ++
Sbjct: 512 ISKSKNANGGVRSPIKSPVRSPTQKGITLMPDKSNSSSPI--------LTQEDKDMLKNV 563
Query: 523 SFKRTGYGRSKSCE-PPPNRGKKAHRTWDSCRSHGSSPARE----FGRNSA-----SELD 572
F++ G SKS E +R K R S +S +R+ R+S ++D
Sbjct: 564 KFRKFVPGISKSQEFDTKSRHSKQIRLIKSNSQSPTSGSRKDMLSLRRSSMLPVIDFQMD 623
Query: 573 KTMDLDVIDGLDRL 586
+T LD+ID LD L
Sbjct: 624 RTKALDLIDRLDGL 637
>Os02g0551700 Protein of unknown function DUF668 family protein
Length = 349
Score = 182 bits (463), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 119/171 (69%), Gaps = 2/171 (1%)
Query: 281 LETIVEKLVDIVVFLHKQIRDSFSEAVSVGADLFNSEQAQNKRLGSCGLALHYANIINQI 340
LE +++KLVDIV FLH +I++SF GA N + LGS GL+LHYANII+QI
Sbjct: 2 LEDVMDKLVDIVHFLHVEIQESF--GTYDGALQLNQPSESRQTLGSAGLSLHYANIISQI 59
Query: 341 ENIVSRPLSLPPSARDNLYHGLPVTVKSALRSRLQSVNAQEERTVAQIKAEMQKTLRWIL 400
+NIVSR P S RD LY GLP T+KSALR +L + +E + +I++ M++TL+WI+
Sbjct: 60 DNIVSRSTVPPQSTRDALYQGLPPTIKSALRKKLHNCPQPQEVPITEIRSSMERTLQWII 119
Query: 401 PIAENTIRAHQGFGWVGEWANLGCEMNKKSGSQLSITRVQTLHYADKAKTE 451
PIA NT RAH GFGWVGEWAN G + +++ Q + +++T ++ADKAKTE
Sbjct: 120 PIANNTARAHHGFGWVGEWANTGNDAMRRAAGQPDVIKIETFYHADKAKTE 170
>Os01g0873900 Conserved hypothetical protein
Length = 130
Score = 118 bits (295), Expect = 2e-26, Method: Composition-based stats.
Identities = 65/110 (59%), Positives = 76/110 (69%), Gaps = 4/110 (3%)
Query: 54 KVPETGTLLGRASIA----AVEVLDTLGSSMTNLNHGSGFLSGGTNRGNRVCILAFEVAN 109
+V E ++LGRAS AVEVLDTLGSSM NLN SGF SG T +GN++ ILAFEVAN
Sbjct: 8 QVSEVSSILGRASTVGLGKAVEVLDTLGSSMANLNINSGFGSGTTTKGNKISILAFEVAN 67
Query: 110 TIAKASNLWRSCSDTSIKELKEEILRSDGVQILVSSNSSELLYIAYVDKR 159
TI K NL R+ S SIK LKE +L S+GVQ L+S + ELL I DKR
Sbjct: 68 TIVKGCNLMRALSKESIKHLKEVVLHSEGVQNLISKDMDELLKIYAADKR 117
>Os11g0180100 Conserved hypothetical protein
Length = 312
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 105/187 (56%), Gaps = 8/187 (4%)
Query: 93 GTNRGNRVCILAFEVANTIAKASNLWRSCSDTSIKELKEEILRSDGVQILVSSNSSELLY 152
T +G ++ ILAFEVANTIA SNL S+ +I+ LK +L++ GVQ L+S + S+LL
Sbjct: 133 ATKKGRKIKILAFEVANTIAMGSNLMNFLSEENIRYLKRVVLQNQGVQSLISDDQSQLLA 192
Query: 153 IAYVDKRDELDIFSREVIRFGNLCKDPTWHNLGRYFNKLTTDFAPQDHSKEHMETTIQQL 212
+ + R + F+ V R GN+C+DP WHNL +F+ L Q++S E + ++ L
Sbjct: 193 LVGDEIRQQFKDFAASVARLGNMCRDPKWHNLEGHFSGLEYGPITQEYSHEKAASKMEDL 252
Query: 213 INLAQNTSELYHELHALDRFEQDFQRKFHEEESVPAARRESVMILHSELKRQRKLVKTLK 272
+ L T L+ L L E+ ++ ++ +P + + + ++++V++ K
Sbjct: 253 MELVTKTKILFEALRRLGVSEKMYREA--KQTGMP------LETFQNAVNIEKEIVQSAK 304
Query: 273 KKSLWSR 279
KK+LW +
Sbjct: 305 KKALWVK 311
>Os03g0858600 Protein of unknown function DUF668 family protein
Length = 475
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 107/424 (25%), Positives = 168/424 (39%), Gaps = 82/424 (19%)
Query: 96 RGNRVCILAFEVANTIAKASNLWRSCSDTSIKELKEEILRSDGVQILVSSNSSELLYIAY 155
R V ILA EVA ++K +LWRS +D ++ L+ ++ DGV+ LVS + + LL +A
Sbjct: 32 RSKTVGILALEVATLMSKLVHLWRSLADAALARLRHHLINLDGVRKLVSHHDAALLALAC 91
Query: 156 VDKRDELDIFSREVIRFGNLCKDPTWHNL----------GRYFNKLTTDFAPQDHSKEHM 205
+ D L + + V C DP + GR ++ + + D M
Sbjct: 92 AELTDALRVAAHSVAALATRCADPFLRDFADAFADFADTGRDPHRWVSTWKDMDTRAHKM 151
Query: 206 ETTIQQLINLAQNTSELYHELHALDRFEQDFQRKFHEEESVPAARRESVMILHSELKRQR 265
+ + L +L H L + Q + ++ A + +I K+Q
Sbjct: 152 DKQVAATSALRTAMEDLADAEHGLRKLLQTSSSRRLSATNISLAAEQQQLIF---AKKQE 208
Query: 266 KLVKTLKKKSLWSRTLETIVEKLVDI---------VVF------------LHKQI----- 299
VK LK+ SLWS T + +V L +VF LH+ +
Sbjct: 209 --VKHLKQTSLWSSTFDAVVSSLARAAFTILARIKLVFGAAHDHRPTTTPLHRSLTLSSA 266
Query: 300 ---------------RDSFSEAVSVGADLFNSEQAQN--------------KRLGSCGLA 330
R S S + +G L+ Q Q+ LG+ LA
Sbjct: 267 VHPSSVDVQVQPPVSRKSMSMDMGMGEALYLERQRQSGLLERSAAALVPPPGTLGAAALA 326
Query: 331 LHYANIINQIENIVSRPLSLPPSARDNLYHGLPVTVKSALRSRLQ-SVNAQEERTVAQIK 389
YA +I IE + P + RD LY L +V++ LR+RL +V A E Q +
Sbjct: 327 PRYAWVIISIERMARSPRLVGAEERDELYGMLTASVRAQLRARLSGTVAAAEPGLAGQWR 386
Query: 390 AEMQKTLRWILPIAENTIRAHQGFGWVGEWANLGCEMNKKSGSQLSITR--VQTLHYADK 447
A + L W+ P+A T+R W E E +K+ ++ VQTL A++
Sbjct: 387 AAVGGILEWLAPMAHATVR------WQAE---RSLEQQRKTTREMETQTLVVQTLQMAER 437
Query: 448 AKTE 451
K E
Sbjct: 438 GKVE 441
>Os04g0433600 Protein of unknown function DUF668 family protein
Length = 166
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 72/111 (64%), Gaps = 3/111 (2%)
Query: 344 VSRPLSLPPSARDNLYHGLPVTVKSALRSRLQSVNAQEERTVAQIKAEMQKTLRWILPIA 403
VSR +PP+ RD LY GLP V+SAL +RL++ + +E + QI+A M KTL+W++P+A
Sbjct: 16 VSRSGYIPPNTRDALYQGLPPRVRSALPNRLRTSSVPQELNIDQIRATMDKTLKWLVPMA 75
Query: 404 ENTIRAHQGFGWVGEWANLGCEMNKKSGSQLSITRVQTLHYADKAKTEQYM 454
NT A +GF EWA G E + Q + V+TL++ADKAKTE Y+
Sbjct: 76 INTTCA-RGFLRFSEWARSGTERVGRRPGQPDV--VETLYHADKAKTEDYI 123
>Os04g0169500 Protein of unknown function DUF668 family protein
Length = 514
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 14/135 (10%)
Query: 324 LGSCGLALHYANIINQIENIVSRPLSLPPSARDNLYHGLPVTVKSALRSRL----QSVNA 379
+G LALHYANI+ IE ++ P + ARD+LY LP ++++ALR L +S+
Sbjct: 352 IGGSALALHYANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKTYVKSMAI 411
Query: 380 QEERTVAQIKAEMQKTLRWILPIAENTIRAHQGFGWVGEWANLGCEMNKKSGSQLSITRV 439
+ + ++KTL W+ P+A N IR W E N + G+ L +
Sbjct: 412 YDAFLAHDWRETLEKTLTWLAPMAHNMIR------WQAE-RNFEQQQIVLKGNVLLL--- 461
Query: 440 QTLHYADKAKTEQYM 454
QTL++AD+ KTE +
Sbjct: 462 QTLYFADREKTEAVI 476
>Os12g0146500 Protein of unknown function DUF668 family protein
Length = 261
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 21/140 (15%)
Query: 324 LGSCGLALHYANIINQIENIVSRPLSLPPSARDNLYHGLPVTVKSALRSRLQSVNAQ--- 380
LG+ LALHYAN+I IE + P + P RD LY+ L ++++LR+RL+ +
Sbjct: 82 LGAAALALHYANLIIFIEKLAVAPRHICPDERDALYNMLTDRIRASLRARLRPIAKNMAA 141
Query: 381 ---------EERTVAQIKAEMQKTLRWILPIAENTIRAHQGFGWVGEWANLGCEMNKKSG 431
+ A+ +Q+ L W+ P+A N +R W E E +
Sbjct: 142 SSSSSSSACDPAMAAEWSGTVQRILGWLAPLAHNMLR------WQSE---RNFEQRNVAS 192
Query: 432 SQLSITRVQTLHYADKAKTE 451
S + +QTLH+AD+ K+E
Sbjct: 193 SGTGVLLLQTLHFADQKKSE 212
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,640,942
Number of extensions: 787554
Number of successful extensions: 2152
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 2141
Number of HSP's successfully gapped: 9
Length of query: 597
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 490
Effective length of database: 11,448,903
Effective search space: 5609962470
Effective search space used: 5609962470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)