Os06g0716000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF668 family protein.
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Os06g0716000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF668 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.93 | 0.373 | 11 | 1.11 | 0.401 | 0.802 | 0.849 | -1.43 | 0.56 | 21.2 | 20.55 | 15 | -- | -- |
| 66.32 | 0.379 | 11 | 1.1 | 0.549 | 0.744 | -0.583 | -- | 0.55 | 22 | 30.84 | 15 | -- | -- |
| 63.53 | 0.371 | 11 | 1.1 | 0.488 | 0.821 | -- | -0.945 | 0.571 | 21.4 | 29.34 | 21 | -- | -- |
| 67.51 | 0.383 | 11 | 1.13 | 0.58 | 0.806 | -- | -- | 0.568 | 21.8 | 39.23 | 20 | -- | -- |
| 67.53 | 0.385 | 11 | 1.09 | -- | 1.01 | -- | -0.936 | 0.532 | -- | 16.73 | 18 | -- | -- |
| 77.22 | 0.412 | 11 | 1.07 | 1.13 | -- | -0.608 | -- | 0.529 | 23.1 | -- | -- | -- | -- |
| 78.78 | 0.416 | 11 | 1.1 | 1.14 | -- | -- | -- | 0.532 | 23 | -- | -- | -- | -- |
| 69.48 | 0.39 | 11 | 1.1 | -- | 0.939 | -- | -- | 0.56 | -- | 7.274 | 4 | -- | -- |
| 99.36 | 0.464 | 11.1 | -- | 0.684 | 0.915 | -- | -- | 0.414 | 22.2 | 70 | 49 | -- | -- |
| 159.26 | 0.59 | 11 | 1.12 | -- | -- | -- | -- | 0.541 | -- | -- | -- | -- | -- |
| 110.54 | 0.492 | 11.1 | -- | 1.15 | -- | -- | -- | 0.41 | 23.1 | -- | -- | -- | -- |
| 101.23 | 0.469 | 11 | -- | -- | 0.974 | -- | -- | 0.428 | -- | 9.935 | 2 | -- | -- |
| 192.56 | 0.648 | 11 | -- | -- | -- | -- | -- | 0.416 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.78 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 12 |
| 2 | 60.97 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 19 |
| 8 | 61.21 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 9 | 61.25 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 20 |
| 35 | 61.86 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 9 |
| 40 | 61.94 | atmosphere | 995 | 43200 | < th | dose independent | no | NA | NA |
| 42 | 61.94 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 51 | 61.99 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 61 | 62.07 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 104 | 62.40 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 134 | 62.50 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 16 | NA |
| 140 | 62.52 | atmosphere | 995 | 43200 | > th | dose independent | no | NA | NA |
| 152 | 62.65 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 172 | 62.81 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 15 |
| 187 | 62.97 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 199 | 63.09 | radiation | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 203 | 63.12 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 8 |
| 209 | 63.14 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 226 | 63.22 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 233 | 63.25 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 237 | 63.29 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 257 | 63.37 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 267 | 63.41 | humidity | 80 | 1440 | < th | dose dependent | sin | 4 | NA |
| 271 | 63.43 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 276 | 63.45 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 297 | 63.55 | atmosphere | 995 | 43200 | > th | dose independent | sin | 3 | NA |
| 327 | 63.68 | radiation | 20 | 90 | < th | dose dependent | rect. | 6 | 14 |
| 328 | 63.70 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 333 | 63.72 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 358 | 63.82 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 373 | 63.86 | atmosphere | 995 | 43200 | < th | dose independent | sin | 19 | NA |
| 408 | 63.99 | radiation | 10 | 90 | < th | dose dependent | sin | 23 | NA |
| 413 | 63.99 | radiation | 20 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 418 | 64.01 | radiation | 10 | 90 | > th | dose independent | sin | 22 | NA |
| 423 | 64.02 | radiation | 1 | 10 | > th | dose independent | sin | 23 | NA |
| 431 | 64.04 | radiation | 1 | 10 | > th | dose independent | rect. | 9 | 21 |
| 449 | 64.12 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 23 |
| 462 | 64.17 | atmosphere | 995 | 43200 | > th | dose independent | sin | 19 | NA |
| 473 | 64.18 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 19 |
| 504 | 64.29 | radiation | 10 | 10 | < th | dose dependent | sin | 23 | NA |
| 518 | 64.32 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 521 | 64.33 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 522 | 64.33 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 15 |
| 524 | 64.33 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 528 | 64.34 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 530 | 64.34 | humidity | 60 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 540 | 64.35 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 573 | 64.43 | atmosphere | 995 | 43200 | < th | dose independent | sin | 2 | NA |
| 582 | 64.45 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 613 | 64.51 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 622 | 64.52 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 634 | 64.55 | humidity | 60 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 654 | 64.56 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 9 |
| 670 | 64.57 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 693 | 64.63 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 694 | 64.63 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 706 | 64.65 | radiation | 20 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 777 | 64.76 | radiation | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 782 | 64.77 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 790 | 64.78 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 804 | 64.80 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 812 | 64.81 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 822 | 64.83 | radiation | 1 | 10 | < th | dose independent | sin | 23 | NA |
| 844 | 64.86 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 879 | 64.88 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 898 | 64.90 | humidity | 60 | 1440 | > th | dose independent | sin | 0 | NA |
| 944 | 64.93 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 947 | 64.94 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 985 | 64.97 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 992 | 64.97 | humidity | 80 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 1000 | 64.99 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |