Os02g0551700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF668 family protein.
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Os02g0551700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF668 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 145.26 | 0.566 | 7.32 | -0.027 | 0.862 | 1.19 | -0.647 | 0.491 | 0.39 | 1.52 | 20.2 | 829 | -- | -- |
| 145.73 | 0.562 | 7.32 | -0.119 | 0.866 | 1.14 | -0.489 | -- | 0.375 | 1.35 | 20.3 | 911 | -- | -- |
| 146.56 | 0.564 | 7.33 | -0.0653 | 0.847 | 1.19 | -- | 0.346 | 0.373 | 1.25 | 20.3 | 916 | -- | -- |
| 146.66 | 0.564 | 7.33 | -0.115 | 0.85 | 1.15 | -- | -- | 0.369 | 1.26 | 20.27 | 917 | -- | -- |
| 189.27 | 0.641 | 7.32 | -0.115 | -- | 1.45 | -- | 0.379 | 0.345 | -- | 20.25 | 930 | -- | -- |
| 179.11 | 0.627 | 7.28 | 0.308 | 0.994 | -- | -0.581 | -- | 0.609 | 1.08 | -- | -- | -- | -- |
| 180.47 | 0.629 | 7.28 | 0.329 | 0.994 | -- | -- | -- | 0.612 | 0.958 | -- | -- | -- | -- |
| 189.64 | 0.641 | 7.33 | -0.175 | -- | 1.41 | -- | -- | 0.339 | -- | 20.2 | 930 | -- | -- |
| 146.96 | 0.565 | 7.32 | -- | 0.853 | 1.11 | -- | -- | 0.388 | 1.25 | 20.28 | 911 | -- | -- |
| 241.99 | 0.727 | 7.26 | 0.366 | -- | -- | -- | -- | 0.631 | -- | -- | -- | -- | -- |
| 183.32 | 0.633 | 7.29 | -- | 0.999 | -- | -- | -- | 0.576 | 0.972 | -- | -- | -- | -- |
| 190.4 | 0.643 | 7.32 | -- | -- | 1.34 | -- | -- | 0.362 | -- | 20.2 | 928 | -- | -- |
| 245.52 | 0.731 | 7.27 | -- | -- | -- | -- | -- | 0.591 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 3 | 138.47 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 4 | 138.47 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 5 | 138.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 8 | 139.60 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 12 | 140.27 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 18 | 140.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 20 | 141.00 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 21 | 141.03 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 10 |
| 22 | 141.04 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 26 | 141.12 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 27 | 141.13 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 30 | 141.30 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 31 | 141.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 42 | 141.69 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 43 | 141.74 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 44 | 141.77 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 55 | 142.04 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 11 |
| 56 | 142.06 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 58 | 142.10 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 13 |
| 211 | 144.09 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 295 | 144.91 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 347 | 145.38 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 352 | 145.44 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 374 | 145.65 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 380 | 145.68 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 429 | 146.05 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 445 | 146.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 467 | 146.39 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 469 | 146.39 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 500 | 146.68 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 513 | 146.83 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 523 | 146.90 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 574 | 147.27 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 711 | 148.50 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 716 | 148.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 5 |
| 739 | 148.68 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 946 | 150.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |