BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0551700 Os02g0551700|AK106428
(349 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0551700 Protein of unknown function DUF668 family protein 555 e-158
Os05g0430300 Protein of unknown function DUF668 family protein 239 2e-63
Os06g0716000 Protein of unknown function DUF668 family protein 182 5e-46
Os04g0433600 Protein of unknown function DUF668 family protein 137 2e-32
Os04g0169500 Protein of unknown function DUF668 family protein 85 9e-17
>Os02g0551700 Protein of unknown function DUF668 family protein
Length = 349
Score = 555 bits (1430), Expect = e-158, Method: Compositional matrix adjust.
Identities = 281/349 (80%), Positives = 281/349 (80%)
Query: 1 MLEDVMDKLVDIVHFLHVEIQESFGTYDGALQLNQPSESRQTLGSAGLSLHYANIISQID 60
MLEDVMDKLVDIVHFLHVEIQESFGTYDGALQLNQPSESRQTLGSAGLSLHYANIISQID
Sbjct: 1 MLEDVMDKLVDIVHFLHVEIQESFGTYDGALQLNQPSESRQTLGSAGLSLHYANIISQID 60
Query: 61 NIVSRSTVPPQSTRDALYQGLPPTIKSALRKKLHNCPQPQEVPITEIRSSMERTLQWIIP 120
NIVSRSTVPPQSTRDALYQGLPPTIKSALRKKLHNCPQPQEVPITEIRSSMERTLQWIIP
Sbjct: 61 NIVSRSTVPPQSTRDALYQGLPPTIKSALRKKLHNCPQPQEVPITEIRSSMERTLQWIIP 120
Query: 121 IANNTARAHHGFGWVGEWANTGNDAMRRAAGQPDVIKIETFYHADKAKTEACILDLVLWL 180
IANNTARAHHGFGWVGEWANTGNDAMRRAAGQPDVIKIETFYHADKAKTEACILDLVLWL
Sbjct: 121 IANNTARAHHGFGWVGEWANTGNDAMRRAAGQPDVIKIETFYHADKAKTEACILDLVLWL 180
Query: 181 HHLISYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVARPSGGTGGGLT 240
HHLISY AVARPSGGTGGGLT
Sbjct: 181 HHLISYSRPSNGGRSRSPSRSPVRSPPLTPPHQVPTTTSSSSPPPPAVARPSGGTGGGLT 240
Query: 241 REDRAMLQDVYAGRRRRAPCHSRSQELXXXXXXXXXXXXXXXXXXXXXQLSKNDRLSKSS 300
REDRAMLQDVYAGRRRRAPCHSRSQEL QLSKNDRLSKSS
Sbjct: 241 REDRAMLQDVYAGRRRRAPCHSRSQELSSARGGGGAGGDSSSAVAAAAQLSKNDRLSKSS 300
Query: 301 NDAPARSXXXXXXXKLFPLSRRPSSAVVSPAVDFDIDGIKALADAQKRQ 349
NDAPARS KLFPLSRRPSSAVVSPAVDFDIDGIKALADAQKRQ
Sbjct: 301 NDAPARSGGGGGGGKLFPLSRRPSSAVVSPAVDFDIDGIKALADAQKRQ 349
>Os05g0430300 Protein of unknown function DUF668 family protein
Length = 640
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/341 (41%), Positives = 190/341 (55%), Gaps = 43/341 (12%)
Query: 2 LEDVMDKLVDIVHFLHVEIQESFGTYDGALQLNQPSESRQTLGSAGLSLHYANIISQIDN 61
LE+VM+KLVDIVHFLH+EI +FG D +P++ LG AGL+LHYANII+QID
Sbjct: 331 LEEVMEKLVDIVHFLHLEINNAFGLADSEAP-QEPAKHHNRLGPAGLALHYANIINQIDT 389
Query: 62 IVSRSTVPPQSTRDALYQGLPPTIKSALRKKLHNCPQPQEVPITEIRSSMERTLQWIIPI 121
+VSRS++ P +TRD LYQGLP TIKSALR KL + +E+ ++I++ ME+TL+W++PI
Sbjct: 390 LVSRSSLIPPTTRDTLYQGLPLTIKSALRSKLQSFELKEELTASQIKAEMEKTLRWLVPI 449
Query: 122 ANNTARAHHGFGWVGEWANTGNDAMRRAAGQPDVIKIETFYHADKAKTEACILDLVLWLH 181
ANNT +AHHGFGWVGEWANTG++ + +GQ D+ +IET YHA+K K + IL+LV+WLH
Sbjct: 450 ANNTTKAHHGFGWVGEWANTGSELNCKLSGQMDLTRIETLYHAEKEKVDGHILELVVWLH 509
Query: 182 HLISYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVARPSGGTGGGLTR 241
HLIS + S + LT+
Sbjct: 510 HLIS---------------KSKNANGGVRSPIKSPVRSPTQKGITLMPDKSNSSSPILTQ 554
Query: 242 EDRAMLQDVYAGRRRRAPCHSRSQELXXXXXXXXXXXXXXXXXXXXXQLSKNDRLSKSSN 301
ED+ ML++V R+ P S+SQE SK RL KS++
Sbjct: 555 EDKDMLKNVKF--RKFVPGISKSQEFDTKSRH-----------------SKQIRLIKSNS 595
Query: 302 DAPARSXXXXXXXKLFPLSRRPSSAVVSPAVDFDIDGIKAL 342
+P LS R SS + P +DF +D KAL
Sbjct: 596 QSPTSGSRKDM------LSLRRSSML--PVIDFQMDRTKAL 628
>Os06g0716000 Protein of unknown function DUF668 family protein
Length = 597
Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 119/171 (69%), Gaps = 2/171 (1%)
Query: 2 LEDVMDKLVDIVHFLHVEIQESF--GTYDGALQLNQPSESRQTLGSAGLSLHYANIISQI 59
LE +++KLVDIV FLH +I++SF GA N + LGS GL+LHYANII+QI
Sbjct: 281 LETIVEKLVDIVVFLHKQIRDSFSEAVSVGADLFNSEQAQNKRLGSCGLALHYANIINQI 340
Query: 60 DNIVSRSTVPPQSTRDALYQGLPPTIKSALRKKLHNCPQPQEVPITEIRSSMERTLQWII 119
+NIVSR P S RD LY GLP T+KSALR +L + +E + +I++ M++TL+WI+
Sbjct: 341 ENIVSRPLSLPPSARDNLYHGLPVTVKSALRSRLQSVNAQEERTVAQIKAEMQKTLRWIL 400
Query: 120 PIANNTARAHHGFGWVGEWANTGNDAMRRAAGQPDVIKIETFYHADKAKTE 170
PIA NT RAH GFGWVGEWAN G + +++ Q + +++T ++ADKAKTE
Sbjct: 401 PIAENTIRAHQGFGWVGEWANLGCEMNKKSGSQLSITRVQTLHYADKAKTE 451
>Os04g0433600 Protein of unknown function DUF668 family protein
Length = 166
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 89/123 (72%), Gaps = 3/123 (2%)
Query: 63 VSRSTVPPQSTRDALYQGLPPTIKSALRKKLHNCPQPQEVPITEIRSSMERTLQWIIPIA 122
VSRS P +TRDALYQGLPP ++SAL +L PQE+ I +IR++M++TL+W++P+A
Sbjct: 16 VSRSGYIPPNTRDALYQGLPPRVRSALPNRLRTSSVPQELNIDQIRATMDKTLKWLVPMA 75
Query: 123 NNTARAHHGFGWVGEWANTGNDAMRRAAGQPDVIKIETFYHADKAKTEACILDLVLWLHH 182
NT A GF EWA +G + + R GQPDV +ET YHADKAKTE ILDLV+WLHH
Sbjct: 76 INTTCA-RGFLRFSEWARSGTERVGRRPGQPDV--VETLYHADKAKTEDYILDLVVWLHH 132
Query: 183 LIS 185
L++
Sbjct: 133 LVN 135
>Os04g0169500 Protein of unknown function DUF668 family protein
Length = 514
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 18/167 (10%)
Query: 24 FGTYDGALQLNQPSESRQTLGSAGLSLHYANIISQIDNIVSRSTVPPQSTRDALYQGLPP 83
FG L PS T+G + L+LHYANI+ I+ ++ + + RD LYQ LP
Sbjct: 337 FGPKSTVTSLAPPS----TIGGSALALHYANIVIIIEKLLRYPHLVGEEARDDLYQMLPS 392
Query: 84 TIKSALRKKLHNCPQPQEVPITEI----RSSMERTLQWIIPIANNTARAHHGFGWVGEWA 139
++++ALRK L + + + R ++E+TL W+ P+A+N R W
Sbjct: 393 SLRAALRKSLKTYVKSMAIYDAFLAHDWRETLEKTLTWLAPMAHNMIR----------WQ 442
Query: 140 NTGNDAMRRAAGQPDVIKIETFYHADKAKTEACILDLVLWLHHLISY 186
N ++ + +V+ ++T Y AD+ KTEA I +L++ L+++ Y
Sbjct: 443 AERNFEQQQIVLKGNVLLLQTLYFADREKTEAVICELLVGLNYICRY 489
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,146,912
Number of extensions: 375410
Number of successful extensions: 978
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 973
Number of HSP's successfully gapped: 6
Length of query: 349
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 247
Effective length of database: 11,709,973
Effective search space: 2892363331
Effective search space used: 2892363331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)