Os04g0169500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF668 family protein.
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Os04g0169500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF668 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.81 | 0.412 | 9.55 | 0.639 | 1.17 | -0.868 | -0.619 | 0.131 | -0.103 | 11 | 54.19 | 1291 | -- | -- |
| 76.82 | 0.408 | 9.55 | 0.65 | 1.18 | -0.861 | -0.59 | -- | -0.0962 | 11 | 53 | 1279 | -- | -- |
| 78.32 | 0.412 | 9.55 | 0.63 | 1.19 | -0.868 | -- | -0.0247 | -0.0986 | 10.9 | 52.94 | 1278 | -- | -- |
| 78.31 | 0.412 | 9.55 | 0.625 | 1.19 | -0.868 | -- | -- | -0.101 | 10.9 | 52 | 1278 | -- | -- |
| 137.5 | 0.549 | 9.57 | 0.631 | -- | -0.713 | -- | 1.3 | -0.102 | -- | 62 | 1546 | -- | -- |
| 93.09 | 0.452 | 9.54 | 0.697 | 1.08 | -- | -0.672 | -- | -0.0588 | 10.7 | -- | -- | -- | -- |
| 94.89 | 0.456 | 9.54 | 0.668 | 1.08 | -- | -- | -- | -0.062 | 10.6 | -- | -- | -- | -- |
| 142.63 | 0.559 | 9.57 | 0.672 | -- | -0.662 | -- | -- | -0.102 | -- | 64.13 | 1546 | -- | -- |
| 88.31 | 0.438 | 9.56 | -- | 1.19 | -0.942 | -- | -- | -0.165 | 10.9 | 29.62 | 1281 | -- | -- |
| 167.22 | 0.604 | 9.57 | 0.648 | -- | -- | -- | -- | -0.067 | -- | -- | -- | -- | -- |
| 106.64 | 0.483 | 9.56 | -- | 1.08 | -- | -- | -- | -0.136 | 10.5 | -- | -- | -- | -- |
| 154.53 | 0.581 | 9.59 | -- | -- | -0.651 | -- | -- | -0.176 | -- | 64.13 | 1546 | -- | -- |
| 178.3 | 0.623 | 9.58 | -- | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.45 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 3 |
| 2 | 73.25 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 12 |
| 4 | 73.47 | humidity | 90 | 720 | < th | dose independent | rect. | 17 | 6 |
| 5 | 73.53 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 12 |
| 10 | 73.76 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 14 | 73.84 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 19 |
| 16 | 73.88 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 16 |
| 20 | 73.98 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 19 |
| 21 | 73.99 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 16 |
| 23 | 74.03 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 54 | 74.70 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 74 | 74.90 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 80 | 74.96 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 84 | 75.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 85 | 75.00 | humidity | 80 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 99 | 75.11 | humidity | 70 | 720 | > th | dose independent | rect. | 14 | 12 |
| 113 | 75.20 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 123 | 75.24 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 238 | 75.83 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 5 |
| 243 | 75.86 | radiation | 1 | 720 | < th | dose independent | sin | 19 | NA |
| 247 | 75.89 | humidity | 80 | 720 | > th | dose independent | rect. | 17 | 2 |
| 249 | 75.89 | radiation | 1 | 720 | < th | dose dependent | sin | 18 | NA |
| 262 | 75.94 | humidity | 60 | 720 | > th | dose dependent | sin | 16 | NA |
| 263 | 75.94 | humidity | 80 | 720 | > th | dose dependent | sin | 20 | NA |
| 303 | 76.10 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 7 |
| 312 | 76.12 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 8 |
| 323 | 76.15 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 18 |
| 327 | 76.16 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 10 |
| 366 | 76.26 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 396 | 76.35 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 411 | 76.40 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 20 |
| 419 | 76.43 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 10 |
| 445 | 76.49 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 450 | 76.50 | humidity | 80 | 30 | > th | dose dependent | rect. | 6 | 22 |
| 453 | 76.51 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 454 | 76.51 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 540 | 76.77 | humidity | 60 | 1440 | > th | dose dependent | rect. | 4 | 17 |
| 665 | 77.02 | humidity | 70 | 1440 | > th | dose dependent | rect. | 6 | 10 |
| 671 | 77.03 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 9 |
| 682 | 77.03 | humidity | 70 | 1440 | > th | dose dependent | sin | 0 | NA |
| 745 | 77.15 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 10 |
| 807 | 77.25 | radiation | 1 | 720 | > th | dose independent | sin | 22 | NA |
| 816 | 77.25 | humidity | 90 | 1440 | < th | dose dependent | rect. | 4 | 17 |
| 835 | 77.27 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 980 | 77.44 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |