BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0169500 Os04g0169500|J100066I18
(514 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0169500 Protein of unknown function DUF668 family protein 868 0.0
Os12g0146500 Protein of unknown function DUF668 family protein 148 1e-35
Os03g0858600 Protein of unknown function DUF668 family protein 140 2e-33
Os05g0457600 129 4e-30
Os01g0845000 Protein of unknown function DUF668 family protein 121 1e-27
Os03g0270500 Protein of unknown function DUF668 family protein 115 7e-26
Os02g0551700 Protein of unknown function DUF668 family protein 87 3e-17
Os05g0430300 Protein of unknown function DUF668 family protein 80 4e-15
Os06g0716000 Protein of unknown function DUF668 family protein 68 1e-11
>Os04g0169500 Protein of unknown function DUF668 family protein
Length = 514
Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/514 (85%), Positives = 439/514 (85%)
Query: 1 MTGGSASCRSRWRTPCRAPPTCTARCRTPKAGRLLGPLCLGSQAVRALVPGXXXXXXXXX 60
MTGGSASCRSRWRTPCRAPPTCTARCRTPKAGRLLGPLCLGSQAVRALVPG
Sbjct: 1 MTGGSASCRSRWRTPCRAPPTCTARCRTPKAGRLLGPLCLGSQAVRALVPGDDARLLALA 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXCTLPALLGFDHVYADLLAGRSDAAFAAALHSEATALVRK 120
CTLPALLGFDHVYADLLAGRSDAAFAAALHSEATALVRK
Sbjct: 61 LAEKLDALIRVAAVAARLGRRCTLPALLGFDHVYADLLAGRSDAAFAAALHSEATALVRK 120
Query: 121 LDRXXXXXXXXXXXXXXXXXXXQSARKLPTDEARRALEQXXXXXXXXXXXXXDSSLWNWT 180
LDR QSARKLPTDEARRALEQ DSSLWNWT
Sbjct: 121 LDRLAAATAALYAELEALADLEQSARKLPTDEARRALEQRTRWRRHDARRLRDSSLWNWT 180
Query: 181 YDKAVLLLARAVCAIYDRIRLVFGDPMRGLDLLAIGRSSRQCDQSRQLSGPASANNSGHV 240
YDKAVLLLARAVCAIYDRIRLVFGDPMRGLDLLAIGRSSRQCDQSRQLSGPASANNSGHV
Sbjct: 181 YDKAVLLLARAVCAIYDRIRLVFGDPMRGLDLLAIGRSSRQCDQSRQLSGPASANNSGHV 240
Query: 241 RTNFGDTKSGPIARIDMDTPRSVNFRSNCGASPGKMFMECLSLSSSVSWKDGFEDEFLED 300
RTNFGDTKSGPIARIDMDTPRSVNFRSNCGASPGKMFMECLSLSSSVSWKDGFEDEFLED
Sbjct: 241 RTNFGDTKSGPIARIDMDTPRSVNFRSNCGASPGKMFMECLSLSSSVSWKDGFEDEFLED 300
Query: 301 ASCISTIRSGMLLPFSGEQGVSTMATKSGKVGRRARFGPKSTVTSLAPPSTIGGSALALH 360
ASCISTIRSGMLLPFSGEQGVSTMATKSGKVGRRARFGPKSTVTSLAPPSTIGGSALALH
Sbjct: 301 ASCISTIRSGMLLPFSGEQGVSTMATKSGKVGRRARFGPKSTVTSLAPPSTIGGSALALH 360
Query: 361 YANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKTYVKSMAIYDAFLAHDW 420
YANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKTYVKSMAIYDAFLAHDW
Sbjct: 361 YANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKTYVKSMAIYDAFLAHDW 420
Query: 421 RETLEKTLTWLAPMAHNMIRWQAERNFEQQQIVLKGNVLLLQTLYFADREKTEAVICELL 480
RETLEKTLTWLAPMAHNMIRWQAERNFEQQQIVLKGNVLLLQTLYFADREKTEAVICELL
Sbjct: 421 RETLEKTLTWLAPMAHNMIRWQAERNFEQQQIVLKGNVLLLQTLYFADREKTEAVICELL 480
Query: 481 VGLNYICRYEQQQNAXXXXXXXXXXXXXMEWQLQ 514
VGLNYICRYEQQQNA MEWQLQ
Sbjct: 481 VGLNYICRYEQQQNALLDCSSSLDFDDCMEWQLQ 514
>Os12g0146500 Protein of unknown function DUF668 family protein
Length = 261
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 106/155 (68%), Gaps = 9/155 (5%)
Query: 350 STIGGSALALHYANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKTYVKSM 409
+T+G +ALALHYAN++I IEKL P + + RD LY ML +RA+LR L+ K+M
Sbjct: 80 TTLGAAALALHYANLIIFIEKLAVAPRHICPDERDALYNMLTDRIRASLRARLRPIAKNM 139
Query: 410 AIY--------DAFLAHDWRETLEKTLTWLAPMAHNMIRWQAERNFEQQQIVLKGN-VLL 460
A D +A +W T+++ L WLAP+AHNM+RWQ+ERNFEQ+ + G VLL
Sbjct: 140 AASSSSSSSACDPAMAAEWSGTVQRILGWLAPLAHNMLRWQSERNFEQRNVASSGTGVLL 199
Query: 461 LQTLYFADREKTEAVICELLVGLNYICRYEQQQNA 495
LQTL+FAD++K+EA I ELLVGLNY+ + ++ +A
Sbjct: 200 LQTLHFADQKKSEAAIVELLVGLNYLWKAGRELDA 234
>Os03g0858600 Protein of unknown function DUF668 family protein
Length = 475
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 99/156 (63%), Gaps = 6/156 (3%)
Query: 340 KSTVTSLAPPSTIGGSALALHYANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALR 399
+S + PP T+G +ALA YA ++I IE++ R P LVG E RD+LY ML +S+RA LR
Sbjct: 308 RSAAALVPPPGTLGAAALAPRYAWVIISIERMARSPRLVGAEERDELYGMLTASVRAQLR 367
Query: 400 KSLKTYVKSMAIYDAFLAHDWRETLEKTLTWLAPMAHNMIRWQAERNFEQQQIV---LKG 456
L V A + LA WR + L WLAPMAH +RWQAER+ EQQ+ ++
Sbjct: 368 ARLSGTV---AAAEPGLAGQWRAAVGGILEWLAPMAHATVRWQAERSLEQQRKTTREMET 424
Query: 457 NVLLLQTLYFADREKTEAVICELLVGLNYICRYEQQ 492
L++QTL A+R K EA + ELLVGLNY+CR+ ++
Sbjct: 425 QTLVVQTLQMAERGKVEAAVAELLVGLNYLCRFHKE 460
>Os05g0457600
Length = 501
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 109/341 (31%), Positives = 153/341 (44%), Gaps = 79/341 (23%)
Query: 173 DSSLWNWTYDKAVLLLARAVCAIYDRIRLVFGDPMRGLDLLAIGRSSRQCDQSRQLSGPA 232
+ SLW+ +Y+KAV+L+ARA CA++ R+ +VFG + GL + S+ L P
Sbjct: 215 EESLWSQSYEKAVILMARAACAVFVRVCVVFGAHVPGLPPPLPPAEAVHSRLSKLLLHPM 274
Query: 233 SANNSGHVRTNFGDTKSGPIARIDMDTPRSVNFRSNCGASPGKMFMECLSLSSSVSWKDG 292
SA + SGPI R D P + SN
Sbjct: 275 SAAAQPR-------SLSGPIQR--RDVPLRIEMSSN------------------------ 301
Query: 293 FEDEFLEDASCISTIRSGMLLPFSGEQGVSTMATKSGKVGRRARFGPKSTVTSLAPPSTI 352
SC IRS P+ T V R P PP T+
Sbjct: 302 ---------SC-PIIRSHCQQPWQ---------TSPPGVDWRKLLEP--------PPGTV 334
Query: 353 GGSALALHYANIVIIIEKLL-RYPHLVG----EEARDDLYQMLPSSLRAALRKSLKTYVK 407
GG+ L L YAN++ E+LL H G EEAR +LY MLPS LRAA+R L+ + +
Sbjct: 335 GGAGLDLQYANVITTAERLLLETDHAEGRQRHEEARAELYAMLPSKLRAAVRAKLRGWWR 394
Query: 408 ------SMAI-YDAFLAHDWRETLEKTLTWLAPMAHNMIRWQAERNFEQQQ-------IV 453
++A+ DA LA WR + L WLAPMA + RW AER+ ++Q+
Sbjct: 395 ERGAAAAVAVELDAGLAEGWRSAAGRILAWLAPMARDTARWHAERSLDRQRRFEVGGGGG 454
Query: 454 LKGNVLLLQTLYFADREKTEAVICELLVGLNYICRYEQQQN 494
LQTL +AD EK EA + E+LV L+ + Y++++
Sbjct: 455 GSARAWALQTLRWADAEKAEAAVVEVLVALSCVGWYDERRR 495
>Os01g0845000 Protein of unknown function DUF668 family protein
Length = 300
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 97/152 (63%), Gaps = 5/152 (3%)
Query: 347 APPSTIGGSALALHYANIVIIIEKLLRYPHLVGEEA----RDDLYQMLPSSLRAALRKSL 402
AP ST+GG+ L YAN+++ E+LL+ +E R ++Y+MLP+ LRAA+R L
Sbjct: 142 APASTVGGAGLDQQYANVIVSAEQLLQMEAEGRQEEANAERAEMYEMLPAKLRAAVRSKL 201
Query: 403 KTYVKSMAIYDAFLAHDWRETLEKTLTWLAPMAHNMIRWQAERNFEQQQIVLKG-NVLLL 461
+ + + DA LA W++ +++ + WL PMA + ++WQAERN ++ + G V L
Sbjct: 202 RDWWRDPGPLDAGLAQGWKDAVDRIMAWLGPMARDTVQWQAERNMDRTRRFDGGARVYAL 261
Query: 462 QTLYFADREKTEAVICELLVGLNYICRYEQQQ 493
QTL +AD+EK EA + E+LV L+ +C YE+++
Sbjct: 262 QTLRWADKEKAEAALVEVLVALSCVCWYEERR 293
>Os03g0270500 Protein of unknown function DUF668 family protein
Length = 286
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 100/165 (60%), Gaps = 13/165 (7%)
Query: 341 STVTSLAPP-STIGGSALALHYANIVIIIEKLLR--YPHLVGEEA--------RDDLYQM 389
S S+ PP ST+GGS + L YAN+++ E LLR +P + E RD+LY+M
Sbjct: 113 SASESIKPPASTVGGSGMELRYANMIVCAEMLLRQLWPTIHSNEVDAGMDLSKRDELYKM 172
Query: 390 LPSSLRAALRKSLKTYVKSMAIYDAFLAHDWRETLEKTLTWLAPMAHNMIRWQAERNFEQ 449
LP ++R A++ L+ + + D A + +++ L WL PMAH+ +RW E + E+
Sbjct: 173 LPVTIRTAVKAKLRESWRGQPV-DEAAAAASMDAVDRMLRWLGPMAHDTVRWHDEHSMER 231
Query: 450 -QQIVLKGNVLLLQTLYFADREKTEAVICELLVGLNYICRYEQQQ 493
Q+ ++ VL++QTL+FADR K E VI E+L+GL+ +C Y+ ++
Sbjct: 232 AQRFSMRPRVLMVQTLHFADRHKAENVIVEVLIGLSCVCWYDDER 276
>Os02g0551700 Protein of unknown function DUF668 family protein
Length = 349
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 18/173 (10%)
Query: 337 FGPKSTVTSLAPPS----TIGGSALALHYANIVIIIEKLLRYPHLVGEEARDDLYQMLPS 392
FG L PS T+G + L+LHYANI+ I+ ++ + + RD LYQ LP
Sbjct: 24 FGTYDGALQLNQPSESRQTLGSAGLSLHYANIISQIDNIVSRSTVPPQSTRDALYQGLPP 83
Query: 393 SLRAALRKSLKTYVKSMAIYDAFLAHDWRETLEKTLTWLAPMAHNMIR----------WQ 442
++++ALRK L + + + R ++E+TL W+ P+A+N R W
Sbjct: 84 TIKSALRKKLHNCPQPQEVPITEI----RSSMERTLQWIIPIANNTARAHHGFGWVGEWA 139
Query: 443 AERNFEQQQIVLKGNVLLLQTLYFADREKTEAVICELLVGLNYICRYEQQQNA 495
N ++ + +V+ ++T Y AD+ KTEA I +L++ L+++ Y + N
Sbjct: 140 NTGNDAMRRAAGQPDVIKIETFYHADKAKTEACILDLVLWLHHLISYSRPSNG 192
>Os05g0430300 Protein of unknown function DUF668 family protein
Length = 640
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 14/154 (9%)
Query: 352 IGGSALALHYANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKTYVKSMAI 411
+G + LALHYANI+ I+ L+ L+ RD LYQ LP ++++ALR L+++ +
Sbjct: 371 LGPAGLALHYANIINQIDTLVSRSSLIPPTTRDTLYQGLPLTIKSALRSKLQSF----EL 426
Query: 412 YDAFLAHDWRETLEKTLTWLAPMAHNMIR------WQAE--RNFEQQQIVLKGNVLL--L 461
+ A + +EKTL WL P+A+N + W E + L G + L +
Sbjct: 427 KEELTASQIKAEMEKTLRWLVPIANNTTKAHHGFGWVGEWANTGSELNCKLSGQMDLTRI 486
Query: 462 QTLYFADREKTEAVICELLVGLNYICRYEQQQNA 495
+TLY A++EK + I EL+V L+++ + N
Sbjct: 487 ETLYHAEKEKVDGHILELVVWLHHLISKSKNANG 520
>Os06g0716000 Protein of unknown function DUF668 family protein
Length = 597
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 14/135 (10%)
Query: 352 IGGSALALHYANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKTYVKSMAI 411
+G LALHYANI+ IE ++ P + ARD+LY LP ++++ALR L +S+
Sbjct: 324 LGSCGLALHYANIINQIENIVSRPLSLPPSARDNLYHGLPVTVKSALRSRL----QSVNA 379
Query: 412 YDAFLAHDWRETLEKTLTWLAPMAHNMIR------WQAE-RNFEQQQIVLKGNVLLL--- 461
+ + ++KTL W+ P+A N IR W E N + G+ L +
Sbjct: 380 QEERTVAQIKAEMQKTLRWILPIAENTIRAHQGFGWVGEWANLGCEMNKKSGSQLSITRV 439
Query: 462 QTLYFADREKTEAVI 476
QTL++AD+ KTE +
Sbjct: 440 QTLHYADKAKTEQYM 454
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.133 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,305,177
Number of extensions: 556681
Number of successful extensions: 1438
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1420
Number of HSP's successfully gapped: 9
Length of query: 514
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 409
Effective length of database: 11,553,331
Effective search space: 4725312379
Effective search space used: 4725312379
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)