Os03g0270500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF668 family protein.
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Os03g0270500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF668 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.25 | 0.371 | 10.6 | 0.793 | 0.825 | 1.31 | -0.645 | 1.95 | 0.0453 | 5.55 | 1.178 | 11578 | -- | -- |
| 67.87 | 0.384 | 10.6 | 0.369 | 1.06 | 1.3 | -0.529 | -- | 0.05 | 5.05 | 1.24 | 11981 | -- | -- |
| 63.28 | 0.37 | 10.6 | 0.786 | 0.825 | 1.31 | -- | 1.94 | 0.0452 | 5.55 | 1.18 | 11582 | -- | -- |
| 67.31 | 0.382 | 10.6 | 0.292 | 0.984 | 1.13 | -- | -- | 0.0506 | 4.99 | 1.257 | 16242 | -- | -- |
| 97.67 | 0.46 | 10.6 | 0.863 | -- | 1.32 | -- | 2.05 | 0.0551 | -- | 1.178 | 11528 | -- | -- |
| 91.02 | 0.447 | 10.6 | 0.671 | 0.842 | -- | -0.6 | -- | 0.237 | 5.62 | -- | -- | -- | -- |
| 91.9 | 0.449 | 10.6 | 0.669 | 0.838 | -- | -- | -- | 0.239 | 5.64 | -- | -- | -- | -- |
| 100.88 | 0.468 | 10.6 | 0.29 | -- | 0.986 | -- | -- | 0.0409 | -- | 1.18 | 18733 | -- | -- |
| 66.77 | 0.381 | 10.6 | -- | 0.92 | 1.2 | -- | -- | -0.105 | 4.89 | 0.4632 | 17623 | -- | -- |
| 128.39 | 0.529 | 10.6 | 0.695 | -- | -- | -- | -- | 0.26 | -- | -- | -- | -- | -- |
| 103.68 | 0.476 | 10.6 | -- | 0.849 | -- | -- | -- | 0.165 | 5.6 | -- | -- | -- | -- |
| 101.67 | 0.47 | 10.6 | -- | -- | 1.07 | -- | -- | 0.0317 | -- | 1.008 | 18756 | -- | -- |
| 141.15 | 0.555 | 10.6 | -- | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.50 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 2 | 61.51 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 3 | 61.53 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 4 | 61.58 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 9 | 61.66 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 26 | 61.93 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 28 | 61.97 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 49 | 62.18 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 54 | 62.24 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 55 | 62.26 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 59 | 62.28 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 70 | 62.33 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 75 | 62.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 77 | 62.37 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 80 | 62.38 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 6 |
| 81 | 62.38 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 89 | 62.42 | humidity | 90 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 125 | 62.53 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 134 | 62.55 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 12 |
| 136 | 62.56 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 149 | 62.61 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 158 | 62.62 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 183 | 62.66 | radiation | 30 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 198 | 62.70 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 22 |
| 202 | 62.71 | humidity | 70 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 209 | 62.72 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 222 | 62.74 | humidity | 70 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 235 | 62.78 | humidity | 80 | 43200 | > th | dose dependent | sin | 20 | NA |
| 236 | 62.78 | radiation | 30 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 251 | 62.79 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 14 |
| 349 | 62.91 | humidity | 90 | 43200 | < th | dose independent | sin | 19 | NA |
| 350 | 62.91 | radiation | 1 | 14400 | > th | dose independent | sin | 22 | NA |
| 356 | 62.92 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 394 | 62.96 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 396 | 62.96 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 19 |
| 403 | 62.97 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 22 |
| 410 | 62.98 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 445 | 63.02 | radiation | 1 | 14400 | < th | dose independent | sin | 23 | NA |
| 541 | 63.11 | humidity | 90 | 43200 | > th | dose independent | sin | 19 | NA |
| 579 | 63.14 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 647 | 63.15 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 679 | 63.17 | radiation | 1 | 14400 | < th | dose dependent | rect. | 12 | 18 |
| 682 | 63.17 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 713 | 63.19 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 720 | 63.20 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 727 | 63.20 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 19 |
| 735 | 63.21 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 753 | 63.22 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 757 | 63.22 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 760 | 63.23 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 814 | 63.23 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 828 | 63.24 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 829 | 63.24 | radiation | 1 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 837 | 63.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 21 |
| 842 | 63.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 851 | 63.25 | radiation | 1 | 14400 | < th | dose dependent | sin | 23 | NA |
| 853 | 63.25 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 856 | 63.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 24 | 19 |
| 861 | 63.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 22 |
| 874 | 63.26 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 952 | 63.31 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 11 |