BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0270500 Os03g0270500|AK108185
(286 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23160.1 | chr3:8260059-8261654 REVERSE LENGTH=532 119 1e-27
AT5G51670.1 | chr5:20993560-20995096 FORWARD LENGTH=475 114 8e-26
AT5G04550.1 | chr5:1303757-1305556 REVERSE LENGTH=600 86 2e-17
AT1G34320.1 | chr1:12520713-12524046 FORWARD LENGTH=658 59 4e-09
AT5G08660.1 | chr5:2814526-2817845 FORWARD LENGTH=650 53 1e-07
>AT3G23160.1 | chr3:8260059-8261654 REVERSE LENGTH=532
Length = 531
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 105 FRQKDTAFSASESIKPPASTVGGSGMELRYANMIVCAEMLLRQLWPTIHSNEVDAGMDLS 164
R F + + AST+GGS + L YAN+++ E LL+ +P + E
Sbjct: 341 IRSNKFGFKSRLTQHASASTIGGSALSLHYANVVIVVEKLLK--YPHLIGEEA------- 391
Query: 165 KRDELYKMLPVTIRTAVKAKLRESWRGQPV-DEXXXXXSMDAVDRMLRWLGPMAHDTVRW 223
RD+LY+MLP +++T +KA LR + + D + +D +L WL P+AH+ +RW
Sbjct: 392 -RDDLYQMLPTSLKTTLKASLRSYLKNISIYDAPLAHDWKETIDGILSWLAPLAHNMIRW 450
Query: 224 HDEHSMERAQRFSMRPRVLMVQTLHFADRHKAENVIVEVLIGLSCVCWYDDERRRPAD 281
E + E+ + R VL++QTL+FADR K E I ++L+GL+ +C Y+ ++ D
Sbjct: 451 QSERNFEQQNQIVKRTNVLLLQTLYFADREKTEAAICKLLVGLNYICHYEQQQNALLD 508
>AT5G51670.1 | chr5:20993560-20995096 FORWARD LENGTH=475
Length = 474
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 141/276 (51%), Gaps = 24/276 (8%)
Query: 17 LIRELNSQRQKVRRLMESSLWSVAAHKVSKLMAKSVLAVLARISITFG-AYVPGLPLLTV 75
L ++ Q+Q V+ L + SLW+ + V ++A+SV LAR+ F A G + TV
Sbjct: 205 LQNKIERQKQHVKYLKDRSLWNKSFDTVVLILARSVFTALARLKSVFSSAAATGYMVPTV 264
Query: 76 GRAWALRRTSGPLQQXXXXXXXXXXXXXXFRQKDTAFSA-----SESIKPPASTVGGSGM 130
+ +S R K T SA S +KPP +T+GG+G+
Sbjct: 265 VSSLPRSLSSSSSSMNLVHPSPNDEE----RDKTTTSSAFLEESSRLLKPPETTLGGAGV 320
Query: 131 ELRYANMIVCAEMLLRQLWPTIHSNEVDAGMDLSKRDELYKMLPVTIRTAVKAKLRESWR 190
L YAN+IV E +++Q P + G+D RD+LY MLP ++R++++++L+
Sbjct: 321 ALHYANLIVVMEKMIKQ--PQL------VGLD--ARDDLYSMLPASVRSSLRSRLK-GVG 369
Query: 191 GQPVDEXXXXXSMDAVDRMLRWLGPMAHDTVRWHDEHSMER---AQRFSMRPRVLMVQTL 247
D A+ R+LRWL P+A + +RW E S E+ A + + RV++VQTL
Sbjct: 370 FTATDGGLATEWKAALGRILRWLLPLAQNMIRWQSERSFEQQHMATATNSQNRVMLVQTL 429
Query: 248 HFADRHKAENVIVEVLIGLSCVCWYDDERRRPADWD 283
FAD+ K E I E+L+GL+ + ++ E A ++
Sbjct: 430 VFADKVKTEAAITELLVGLNYIWRFEREMTAKALFN 465
>AT5G04550.1 | chr5:1303757-1305556 REVERSE LENGTH=600
Length = 599
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 15/151 (9%)
Query: 123 STVGGSGMELRYANMIVCAEMLLRQLWPTIHSNEVDAGMDLSKRDELYKMLPVTIRTAVK 182
+T+G + + L YAN+I+ E + P + ++ RD+LY MLP ++RT+++
Sbjct: 431 NTLGTACLALHYANVIIVIERFVAS--PHLIGDDA--------RDDLYNMLPASVRTSLR 480
Query: 183 AKLRESWRG----QPVDEXXXXXSMDAVDRMLRWLGPMAHDTVRWHDEHSMERAQRFSMR 238
+L+ + D DA+ +L WLGP+AH+ ++W E S E Q R
Sbjct: 481 ERLKPYSKNLSSSTVYDPGLAREWTDAMAGILEWLGPLAHNMIKWQSERSYEH-QSLVSR 539
Query: 239 PRVLMVQTLHFADRHKAENVIVEVLIGLSCV 269
+++ QTL FA++ K E +I E+L+GL+ V
Sbjct: 540 THIVLAQTLFFANQQKTEAIITELLVGLNYV 570
>AT1G34320.1 | chr1:12520713-12524046 FORWARD LENGTH=658
Length = 657
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 113/271 (41%), Gaps = 70/271 (25%)
Query: 5 SAKRQVPEPGEKLIRELNSQRQKVRRLMESSLWSVAAHKVSKLMAKSVLAVLARISITFG 64
+A+R V + L EL SQ++ VR L + SLWS +V + + V + I FG
Sbjct: 303 TAQRGVGDTLAILRTELKSQKKHVRNLKKKSLWSRILEEVMEKLVDVVHFLHLEIHEAFG 362
Query: 65 AYVPGLPLLTVGRAWALRRTSGPLQQXXXXXXXXXXXXXXFRQKDTAFSASESIKPPAS- 123
P P + PP +
Sbjct: 363 GADPDKP---------------------------------------------ANDPPINH 377
Query: 124 -TVGGSGMELRYANMIVCAEMLLRQLWPTIHSNEVDAGMDLSKRDELYKMLPVTIRTAVK 182
+G +G+ L YAN+I + L+ + + M S RD LY+ LP +I++A++
Sbjct: 378 KKLGSAGLALHYANIITQIDTLVSR----------SSTMPASTRDALYQGLPPSIKSALR 427
Query: 183 AKLRESWRGQPVDEXXXXXSMDA-VDRMLRWLGPMAHDTVRWHDEHS-----MERAQRFS 236
+++ +S++ V E + A +++ L+WL P+A +T + H +
Sbjct: 428 SRI-QSFQ---VKEELTVPQIKAEMEKTLQWLVPVATNTTKAHHGFGWVGEWASSGSEAN 483
Query: 237 MRP---RVLMVQTLHFADRHKAENVIVEVLI 264
RP +L + TLH AD+ K E I+++++
Sbjct: 484 QRPAGQTILRIDTLHHADKEKTEAYILDLVV 514
>AT5G08660.1 | chr5:2814526-2817845 FORWARD LENGTH=650
Length = 649
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 23/149 (15%)
Query: 125 VGGSGMELRYANMIVCAEMLLRQLWPTIHSNEVDAGMDLSKRDELYKMLPVTIRTAVKAK 184
+G +G+ L YAN+IV + L+ + +I SN RD LY+ LP I+ A+++K
Sbjct: 372 LGPAGLALHYANIIVQIDTLVARA-SSITSN---------ARDSLYQSLPPGIKLALRSK 421
Query: 185 LRESWRGQPVDEXXXXXSM-DAVDRMLRWLGPMAHDTVRWHDEHS-----MERAQRFSMR 238
++ VD+ + D ++R L WL P+A +T + H F+ +
Sbjct: 422 IKSF----NVDKELSVTQIKDEMERTLHWLVPVAGNTTKAHHGFGWVGEWANTGTDFTSK 477
Query: 239 PR---VLMVQTLHFADRHKAENVIVEVLI 264
P +L ++TL+ A + K E I+ +I
Sbjct: 478 PSGGDILRIETLYHASKEKTEIYILGQII 506
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,562,520
Number of extensions: 188321
Number of successful extensions: 444
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 5
Length of query: 286
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 188
Effective length of database: 8,419,801
Effective search space: 1582922588
Effective search space used: 1582922588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)