BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0169500 Os04g0169500|J100066I18
(514 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23160.1 | chr3:8260059-8261654 REVERSE LENGTH=532 347 1e-95
AT5G04550.1 | chr5:1303757-1305556 REVERSE LENGTH=600 183 2e-46
AT5G51670.1 | chr5:20993560-20995096 FORWARD LENGTH=475 167 1e-41
AT1G34320.1 | chr1:12520713-12524046 FORWARD LENGTH=658 83 3e-16
AT5G08660.1 | chr5:2814526-2817845 FORWARD LENGTH=650 78 1e-14
AT1G30755.1 | chr1:10905991-10908773 REVERSE LENGTH=616 64 1e-10
>AT3G23160.1 | chr3:8260059-8261654 REVERSE LENGTH=532
Length = 531
Score = 347 bits (889), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 195/438 (44%), Positives = 253/438 (57%), Gaps = 37/438 (8%)
Query: 82 CTLPALLGFDHVYADLLAGRSDAAFAAALHSEATALVRKLDRXXXXXXXXXXXXXXXXXX 141
C PAL GF+HVY D++ G D L + ++V+K++R
Sbjct: 119 CNEPALQGFEHVYEDIVNGAIDFRKLGFLVKDMESMVKKMERFVNATCSLYCEMEVMNEL 178
Query: 142 XQSARKLP----TDEARRALEQXXXXXXXXXXXXXDSSLWNWTYDKAVLLLARAVCAIYD 197
Q+ KL E+ +A EQ D SLWN TYDK V +LAR VC IY
Sbjct: 179 EQAIVKLQRSQQHQESVKAFEQKLMWQRQDVKSLRDGSLWNQTYDKVVEMLARTVCTIYG 238
Query: 198 RIRLVFGDPMRGLDLLAIGRSSRQCDQSRQLSGPASANNSGHVRTNFGDTKSGPIARIDM 257
RI VFG GL L G+ + R + + A NS V F D++
Sbjct: 239 RIETVFG----GLGLR--GKKDVTLKRDRSKNEASKAVNSRSV-AGFKDSRRSEADEF-- 289
Query: 258 DTPRSVNFRSNCGASPGKMFMECLSLSSSVSWKDGFEDEFLEDASCISTIRSGMLLPFSG 317
R+ +F CG +PG+MFMECL+++ ++ +D + P S
Sbjct: 290 --TRAGDFNFPCGTNPGRMFMECLAMNRTIG----------DDDDDDDEDGGRITFPLS- 336
Query: 318 EQGVSTMATKSGKVGRRARFGPKSTVTSLAPPSTIGGSALALHYANIVIIIEKLLRYPHL 377
+ ++ R +FG KS +T A STIGGSAL+LHYAN+VI++EKLL+YPHL
Sbjct: 337 ----------TARMIRSNKFGFKSRLTQHASASTIGGSALSLHYANVVIVVEKLLKYPHL 386
Query: 378 VGEEARDDLYQMLPSSLRAALRKSLKTYVKSMAIYDAFLAHDWRETLEKTLTWLAPMAHN 437
+GEEARDDLYQMLP+SL+ L+ SL++Y+K+++IYDA LAHDW+ET++ L+WLAP+AHN
Sbjct: 387 IGEEARDDLYQMLPTSLKTTLKASLRSYLKNISIYDAPLAHDWKETIDGILSWLAPLAHN 446
Query: 438 MIRWQAERNFEQQ-QIVLKGNVLLLQTLYFADREKTEAVICELLVGLNYICRYEQQQNAX 496
MIRWQ+ERNFEQQ QIV + NVLLLQTLYFADREKTEA IC+LLVGLNYIC YEQQQNA
Sbjct: 447 MIRWQSERNFEQQNQIVKRTNVLLLQTLYFADREKTEAAICKLLVGLNYICHYEQQQNAL 506
Query: 497 XXXXXXXXXXXXMEWQLQ 514
EWQ Q
Sbjct: 507 LDCASSFDYEDCFEWQSQ 524
>AT5G04550.1 | chr5:1303757-1305556 REVERSE LENGTH=600
Length = 599
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 120/154 (77%), Gaps = 3/154 (1%)
Query: 345 SLAPPSTIGGSALALHYANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKT 404
S A P+T+G + LALHYAN++I+IE+ + PHL+G++ARDDLY MLP+S+R +LR+ LK
Sbjct: 426 SDAAPNTLGTACLALHYANVIIVIERFVASPHLIGDDARDDLYNMLPASVRTSLRERLKP 485
Query: 405 YVKSMA---IYDAFLAHDWRETLEKTLTWLAPMAHNMIRWQAERNFEQQQIVLKGNVLLL 461
Y K+++ +YD LA +W + + L WL P+AHNMI+WQ+ER++E Q +V + +++L
Sbjct: 486 YSKNLSSSTVYDPGLAREWTDAMAGILEWLGPLAHNMIKWQSERSYEHQSLVSRTHIVLA 545
Query: 462 QTLYFADREKTEAVICELLVGLNYICRYEQQQNA 495
QTL+FA+++KTEA+I ELLVGLNY+ R+ ++ NA
Sbjct: 546 QTLFFANQQKTEAIITELLVGLNYVWRFGRELNA 579
>AT5G51670.1 | chr5:20993560-20995096 FORWARD LENGTH=475
Length = 474
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 111/155 (71%), Gaps = 7/155 (4%)
Query: 346 LAPP-STIGGSALALHYANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKT 404
L PP +T+GG+ +ALHYAN+++++EK+++ P LVG +ARDDLY MLP+S+R++LR LK
Sbjct: 308 LKPPETTLGGAGVALHYANLIVVMEKMIKQPQLVGLDARDDLYSMLPASVRSSLRSRLKG 367
Query: 405 YVKSMAIYDAFLAHDWRETLEKTLTWLAPMAHNMIRWQAERNFEQQQIVLKGN----VLL 460
D LA +W+ L + L WL P+A NMIRWQ+ER+FEQQ + N V+L
Sbjct: 368 V--GFTATDGGLATEWKAALGRILRWLLPLAQNMIRWQSERSFEQQHMATATNSQNRVML 425
Query: 461 LQTLYFADREKTEAVICELLVGLNYICRYEQQQNA 495
+QTL FAD+ KTEA I ELLVGLNYI R+E++ A
Sbjct: 426 VQTLVFADKVKTEAAITELLVGLNYIWRFEREMTA 460
>AT1G34320.1 | chr1:12520713-12524046 FORWARD LENGTH=658
Length = 657
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 16/152 (10%)
Query: 348 PP---STIGGSALALHYANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKT 404
PP +G + LALHYANI+ I+ L+ + RD LYQ LP S+++ALR +
Sbjct: 373 PPINHKKLGSAGLALHYANIITQIDTLVSRSSTMPASTRDALYQGLPPSIKSALR----S 428
Query: 405 YVKSMAIYDAFLAHDWRETLEKTLTWLAPMAHNMIR------WQAE---RNFEQQQIVLK 455
++S + + + +EKTL WL P+A N + W E E Q
Sbjct: 429 RIQSFQVKEELTVPQIKAEMEKTLQWLVPVATNTTKAHHGFGWVGEWASSGSEANQRPAG 488
Query: 456 GNVLLLQTLYFADREKTEAVICELLVGLNYIC 487
+L + TL+ AD+EKTEA I +L+V L+++
Sbjct: 489 QTILRIDTLHHADKEKTEAYILDLVVWLHHLV 520
>AT5G08660.1 | chr5:2814526-2817845 FORWARD LENGTH=650
Length = 649
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 13/145 (8%)
Query: 352 IGGSALALHYANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKTYVKSMAI 411
+G + LALHYANI++ I+ L+ + ARD LYQ LP ++ ALR + +KS +
Sbjct: 372 LGPAGLALHYANIIVQIDTLVARASSITSNARDSLYQSLPPGIKLALR----SKIKSFNV 427
Query: 412 YDAFLAHDWRETLEKTLTWLAPMAHNMIR------WQAERNFEQQQIVLK---GNVLLLQ 462
++ +E+TL WL P+A N + W E K G++L ++
Sbjct: 428 DKELSVTQIKDEMERTLHWLVPVAGNTTKAHHGFGWVGEWANTGTDFTSKPSGGDILRIE 487
Query: 463 TLYFADREKTEAVICELLVGLNYIC 487
TLY A +EKTE I ++ L ++
Sbjct: 488 TLYHASKEKTEIYILGQIIWLQHLV 512
>AT1G30755.1 | chr1:10905991-10908773 REVERSE LENGTH=616
Length = 615
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 21/152 (13%)
Query: 352 IGGSALALHYANIVIIIEKLLRYPHLVGEEARDDLYQMLPSSLRAALRKSLKTYVKSMAI 411
+G + L+LHYAN++ I+ + P + RD LY LP++++ ALR L+T +
Sbjct: 355 LGEAGLSLHYANLIQQIDNIASRPSSLPSNVRDTLYNALPATVKTALRPRLQTLDQE--- 411
Query: 412 YDAFLAHDWRETLEKTLTWLAPMAHNMIR------WQAERNFEQQQIVL---------KG 456
+ + + +EK+L WL P A N + W E + +I G
Sbjct: 412 -EELSVPEIKAEMEKSLQWLVPFAENTTKAHQGFGWVGE--WANSRIEFGKGKGKGENNG 468
Query: 457 NVLLLQTLYFADREKTEAVICELLVGLNYICR 488
N LQTL+ AD+ ++ + EL+V L+ + +
Sbjct: 469 NPTRLQTLHHADKPIVDSYVLELVVWLHRLMK 500
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.133 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,283,929
Number of extensions: 326922
Number of successful extensions: 636
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 6
Length of query: 514
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 411
Effective length of database: 8,282,721
Effective search space: 3404198331
Effective search space used: 3404198331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)