Os04g0433600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF668 family protein.
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Os04g0433600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF668 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.38 | 0.35 | 11.9 | -0.744 | 1.12 | 0.848 | 0.313 | -1.61 | 0.225 | 5.87 | 31.34 | 1161 | -- | -- |
| 55.5 | 0.347 | 11.9 | -0.48 | 1.13 | 0.678 | 0.307 | -- | 0.226 | 5.9 | 31.8 | 1116 | -- | -- |
| 55.61 | 0.347 | 11.9 | -0.73 | 1.12 | 0.843 | -- | -1.52 | 0.224 | 5.9 | 31.3 | 1160 | -- | -- |
| 55.69 | 0.348 | 11.9 | -0.492 | 1.13 | 0.682 | -- | -- | 0.235 | 5.89 | 31.31 | 1153 | -- | -- |
| 120.44 | 0.511 | 12 | -0.66 | -- | 0.823 | -- | -0.907 | 0.242 | -- | 31.52 | 1192 | -- | -- |
| 76.54 | 0.41 | 11.9 | -0.328 | 1.15 | -- | 0.485 | -- | 0.104 | 5.52 | -- | -- | -- | -- |
| 77.1 | 0.411 | 11.9 | -0.326 | 1.16 | -- | -- | -- | 0.102 | 5.57 | -- | -- | -- | -- |
| 120.2 | 0.511 | 11.9 | -0.466 | -- | 0.731 | -- | -- | 0.262 | -- | 31.28 | 1189 | -- | -- |
| 61.85 | 0.366 | 11.9 | -- | 1.1 | 0.608 | -- | -- | 0.237 | 5.87 | 31.5 | 1150 | -- | -- |
| 146.57 | 0.566 | 12 | -0.288 | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
| 79.91 | 0.418 | 11.9 | -- | 1.15 | -- | -- | -- | 0.139 | 5.58 | -- | -- | -- | -- |
| 125.9 | 0.523 | 11.9 | -- | -- | 0.67 | -- | -- | 0.3 | -- | 31.59 | 1180 | -- | -- |
| 148.76 | 0.569 | 12 | -- | -- | -- | -- | -- | 0.162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.12 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 6 | 53.78 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 25 | 54.41 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 28 | 54.45 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 57 | 55.21 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 68 | 55.23 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 76 | 55.45 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 118 | 55.84 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 178 | 56.91 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 188 | 56.94 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 207 | 57.10 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 276 | 57.47 | temperature | 30 | 1440 | > th | dose dependent | sin | 12 | NA |
| 299 | 57.66 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 342 | 57.74 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 345 | 57.77 | humidity | 60 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 359 | 57.79 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 4 |
| 399 | 57.86 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 12 |
| 401 | 57.87 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 420 | 57.89 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 9 |
| 453 | 58.04 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 521 | 58.18 | wind | 3 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 523 | 58.21 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 524 | 58.21 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 549 | 58.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 558 | 58.32 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 7 |
| 572 | 58.34 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 16 |
| 603 | 58.42 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 611 | 58.42 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 8 |
| 639 | 58.45 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 4 |
| 734 | 58.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 753 | 58.64 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 845 | 58.65 | radiation | 40 | 1440 | > th | dose dependent | sin | 13 | NA |
| 847 | 58.65 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 853 | 58.67 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 858 | 58.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 864 | 58.71 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 925 | 58.91 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 969 | 58.94 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 1000 | 59.00 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |