BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0551700 Os02g0551700|AK106428
(349 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G34320.1 | chr1:12520713-12524046 FORWARD LENGTH=658 271 4e-73
AT5G08660.1 | chr5:2814526-2817845 FORWARD LENGTH=650 208 3e-54
AT1G30755.1 | chr1:10905991-10908773 REVERSE LENGTH=616 181 4e-46
AT5G51670.1 | chr5:20993560-20995096 FORWARD LENGTH=475 78 6e-15
AT3G23160.1 | chr3:8260059-8261654 REVERSE LENGTH=532 73 2e-13
AT5G04550.1 | chr5:1303757-1305556 REVERSE LENGTH=600 64 2e-10
>AT1G34320.1 | chr1:12520713-12524046 FORWARD LENGTH=658
Length = 657
Score = 271 bits (693), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 152/342 (44%), Positives = 204/342 (59%), Gaps = 34/342 (9%)
Query: 1 MLEDVMDKLVDIVHFLHVEIQESFGTYDGALQLNQPSESRQTLGSAGLSLHYANIISQID 60
+LE+VM+KLVD+VHFLH+EI E+FG D N P + + LGSAGL+LHYANII+QID
Sbjct: 338 ILEEVMEKLVDVVHFLHLEIHEAFGGADPDKPANDPPINHKKLGSAGLALHYANIITQID 397
Query: 61 NIVSRSTVPPQSTRDALYQGLPPTIKSALRKKLHNCPQPQEVPITEIRSSMERTLQWIIP 120
+VSRS+ P STRDALYQGLPP+IKSALR ++ + +E+ + +I++ ME+TLQW++P
Sbjct: 398 TLVSRSSTMPASTRDALYQGLPPSIKSALRSRIQSFQVKEELTVPQIKAEMEKTLQWLVP 457
Query: 121 IANNTARAHHGFGWVGEWANTGNDAMRRAAGQPDVIKIETFYHADKAKTEACILDLVLWL 180
+A NT +AHHGFGWVGEWA++G++A +R AGQ +++I+T +HADK KTEA ILDLV+WL
Sbjct: 458 VATNTTKAHHGFGWVGEWASSGSEANQRPAGQT-ILRIDTLHHADKEKTEAYILDLVVWL 516
Query: 181 HHLISYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVARPSGGTGGGLT 240
HHL++ PS G LT
Sbjct: 517 HHLVT-----------QVRATTGYGLRSPVKSPIRSPNQKTIQLSSGSHNPSMGL-PLLT 564
Query: 241 REDRAMLQDVYAGRRRRAPCHSRSQELXXXXXXXXXXXXXXXXXXXXXQLSKNDRLSKSS 300
ED+ ML+DV +RR+ P S+SQE +L K+ RLSKSS
Sbjct: 565 TEDQEMLRDV--SKRRKTPGISKSQEF---------------ETVAKARLCKHHRLSKSS 607
Query: 301 NDAPARSXXXXXXXKLFPLSRRPSSAVVSPAVDFDIDGIKAL 342
+ +P F +RRPSS P +DFDID +KAL
Sbjct: 608 SHSPMMGEMMKNKKDTFS-TRRPSSV---PIIDFDIDRMKAL 645
>AT5G08660.1 | chr5:2814526-2817845 FORWARD LENGTH=650
Length = 649
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 96/184 (52%), Positives = 128/184 (69%), Gaps = 1/184 (0%)
Query: 2 LEDVMDKLVDIVHFLHVEIQESFGTYDGALQLNQPSESRQTLGSAGLSLHYANIISQIDN 61
E+VM+KLVDIVHFL +EI FG D +E + LG AGL+LHYANII QID
Sbjct: 331 FEEVMEKLVDIVHFLLLEIHNIFGGADDQPSKKGAAEYDKRLGPAGLALHYANIIVQIDT 390
Query: 62 IVSRSTVPPQSTRDALYQGLPPTIKSALRKKLHNCPQPQEVPITEIRSSMERTLQWIIPI 121
+V+R++ + RD+LYQ LPP IK ALR K+ + +E+ +T+I+ MERTL W++P+
Sbjct: 391 LVARASSITSNARDSLYQSLPPGIKLALRSKIKSFNVDKELSVTQIKDEMERTLHWLVPV 450
Query: 122 ANNTARAHHGFGWVGEWANTGNDAMRRAAGQPDVIKIETFYHADKAKTEACILDLVLWLH 181
A NT +AHHGFGWVGEWANTG D + +G D+++IET YHA K KTE IL ++WL
Sbjct: 451 AGNTTKAHHGFGWVGEWANTGTDFTSKPSG-GDILRIETLYHASKEKTEIYILGQIIWLQ 509
Query: 182 HLIS 185
HL++
Sbjct: 510 HLVT 513
>AT1G30755.1 | chr1:10905991-10908773 REVERSE LENGTH=616
Length = 615
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 125/186 (67%), Gaps = 5/186 (2%)
Query: 2 LEDVMDKLVDIVHFLHVEIQESFGTYDGALQLNQPSESRQTLGSAGLSLHYANIISQIDN 61
L ++++KLVD+V ++ I E FG + L+ N+ + R+ LG AGLSLHYAN+I QIDN
Sbjct: 316 LAEIIEKLVDVVSYIRQTIVEVFG--NNGLRDNEGEQGRERLGEAGLSLHYANLIQQIDN 373
Query: 62 IVSRSTVPPQSTRDALYQGLPPTIKSALRKKLHNCPQPQEVPITEIRSSMERTLQWIIPI 121
I SR + P + RD LY LP T+K+ALR +L Q +E+ + EI++ ME++LQW++P
Sbjct: 374 IASRPSSLPSNVRDTLYNALPATVKTALRPRLQTLDQEEELSVPEIKAEMEKSLQWLVPF 433
Query: 122 ANNTARAHHGFGWVGEWANTGNDAMR---RAAGQPDVIKIETFYHADKAKTEACILDLVL 178
A NT +AH GFGWVGEWAN+ + + + + +++T +HADK ++ +L+LV+
Sbjct: 434 AENTTKAHQGFGWVGEWANSRIEFGKGKGKGENNGNPTRLQTLHHADKPIVDSYVLELVV 493
Query: 179 WLHHLI 184
WLH L+
Sbjct: 494 WLHRLM 499
>AT5G51670.1 | chr5:20993560-20995096 FORWARD LENGTH=475
Length = 474
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 83/154 (53%), Gaps = 10/154 (6%)
Query: 32 QLNQPSESRQTLGSAGLSLHYANIISQIDNIVSRSTVPPQSTRDALYQGLPPTIKSALRK 91
+L +P E+ TLG AG++LHYAN+I ++ ++ + + RD LY LP +++S+LR
Sbjct: 306 RLLKPPET--TLGGAGVALHYANLIVVMEKMIKQPQLVGLDARDDLYSMLPASVRSSLRS 363
Query: 92 KLHNC--PQPQEVPITEIRSSMERTLQWIIPIANNTARAHHGFGWVGEWANTGNDAMRRA 149
+L TE ++++ R L+W++P+A N R W E +
Sbjct: 364 RLKGVGFTATDGGLATEWKAALGRILRWLLPLAQNMIR------WQSERSFEQQHMATAT 417
Query: 150 AGQPDVIKIETFYHADKAKTEACILDLVLWLHHL 183
Q V+ ++T ADK KTEA I +L++ L+++
Sbjct: 418 NSQNRVMLVQTLVFADKVKTEAAITELLVGLNYI 451
>AT3G23160.1 | chr3:8260059-8261654 REVERSE LENGTH=532
Length = 531
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 15/153 (9%)
Query: 39 SRQTLGSAGLSLHYANIISQIDNIVSRSTVPPQSTRDALYQGLP----PTIKSALRKKLH 94
S T+G + LSLHYAN++ ++ ++ + + RD LYQ LP T+K++LR L
Sbjct: 357 SASTIGGSALSLHYANVVIVVEKLLKYPHLIGEEARDDLYQMLPTSLKTTLKASLRSYLK 416
Query: 95 NCPQPQEVPITEIRSSMERTLQWIIPIANNTARAHHGFGWVGEWANTGN-DAMRRAAGQP 153
N + + +++ L W+ P+A+N R W + N + + +
Sbjct: 417 NISIYDAPLAHDWKETIDGILSWLAPLAHNMIR----------WQSERNFEQQNQIVKRT 466
Query: 154 DVIKIETFYHADKAKTEACILDLVLWLHHLISY 186
+V+ ++T Y AD+ KTEA I L++ L+++ Y
Sbjct: 467 NVLLLQTLYFADREKTEAAICKLLVGLNYICHY 499
>AT5G04550.1 | chr5:1303757-1305556 REVERSE LENGTH=600
Length = 599
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 21/155 (13%)
Query: 41 QTLGSAGLSLHYANIISQIDNIVSRSTVPPQSTRDALYQGLPPTIKSALRKKLHNCPQPQ 100
TLG+A L+LHYAN+I I+ V+ + RD LY LP +++++LR++L P +
Sbjct: 431 NTLGTACLALHYANVIIVIERFVASPHLIGDDARDDLYNMLPASVRTSLRERLK--PYSK 488
Query: 101 EVPIT---------EIRSSMERTLQWIIPIANNTARAHHGFGWVGEWANTGNDAMRRAAG 151
+ + E +M L+W+ P+A+N + W + + +
Sbjct: 489 NLSSSTVYDPGLAREWTDAMAGILEWLGPLAHNMIK----------WQSERSYEHQSLVS 538
Query: 152 QPDVIKIETFYHADKAKTEACILDLVLWLHHLISY 186
+ ++ +T + A++ KTEA I +L++ L+++ +
Sbjct: 539 RTHIVLAQTLFFANQQKTEAIITELLVGLNYVWRF 573
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,014,580
Number of extensions: 209518
Number of successful extensions: 460
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 7
Length of query: 349
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 250
Effective length of database: 8,392,385
Effective search space: 2098096250
Effective search space used: 2098096250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)