BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0165600 Os06g0165600|AF243384
(253 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0165600 CRT/DRE binding factor (Transcription factor R... 452 e-127
Os08g0545400 Similar to CRT/DRE binding factor (Transcripti... 169 2e-42
Os09g0522200 DRE-binding protein 1A 128 5e-30
Os04g0572400 Similar to CRT/DRE binding factor 1 95 6e-20
Os06g0127100 Similar to CBF-like protein 94 8e-20
Os08g0545500 Similar to DRE-binding protein 1A 92 3e-19
Os02g0677300 Similar to CRT/DRE binding factor 1 87 1e-17
Os01g0968800 Similar to Dehydration responsive element bind... 86 2e-17
Os09g0522100 Similar to C-repeat binding factor 3-like protein 82 5e-16
Os09g0522000 Similar to CBF-like protein 70 2e-12
Os10g0560700 Similar to Transcriptional factor TINY 65 6e-11
Os04g0550200 Pathogenesis-related transcriptional factor an... 64 1e-10
>Os06g0165600 CRT/DRE binding factor (Transcription factor RCBF4)
Length = 253
Score = 452 bits (1162), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/253 (87%), Positives = 222/253 (87%)
Query: 1 MEKNTAASGQLMTSSAEATPSSPKRPAGRTKFQETRHLVFRGVRWRGCAGRWVCKVRVPG 60
MEKNTAASGQLMTSSAEATPSSPKRPAGRTKFQETRHLVFRGVRWRGCAGRWVCKVRVPG
Sbjct: 1 MEKNTAASGQLMTSSAEATPSSPKRPAGRTKFQETRHLVFRGVRWRGCAGRWVCKVRVPG 60
Query: 61 SRGDRFWIGTSDTAEETARTHDAAMLALCGASASLNFADSAWLLHVPRAPVVSGLRPPAA 120
SRGDRFWIGTSDTAEETARTHDAAMLALCGASASLNFADSAWLLHVPRAPVVSGLRPPAA
Sbjct: 61 SRGDRFWIGTSDTAEETARTHDAAMLALCGASASLNFADSAWLLHVPRAPVVSGLRPPAA 120
Query: 121 RCATRCLQGHRRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQCEFIFLSSLDCWML 180
RCATRCLQGHRRV KQCEFIFLSSLDCWML
Sbjct: 121 RCATRCLQGHRRVPAPGRGSTATATATSGDAASTAPPSAPVLSAKQCEFIFLSSLDCWML 180
Query: 181 MSKLISSSRAKGSLCLRKNPISFCMVTNSYTALLLEYIILQMNSMIVLIHELSKYQVFLL 240
MSKLISSSRAKGSLCLRKNPISFCMVTNSYTALLLEYIILQMNSMIVLIHELSKYQVFLL
Sbjct: 181 MSKLISSSRAKGSLCLRKNPISFCMVTNSYTALLLEYIILQMNSMIVLIHELSKYQVFLL 240
Query: 241 LTMITHHLFQWRR 253
LTMITHHLFQWRR
Sbjct: 241 LTMITHHLFQWRR 253
>Os08g0545400 Similar to CRT/DRE binding factor (Transcription factor RCBF4)
Length = 236
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/139 (72%), Positives = 108/139 (77%), Gaps = 7/139 (5%)
Query: 1 MEKNTAASGQLMTSSAEAT-----PSSPKRPAGRTKFQETRHLVFRGVRWRGCAGRWVCK 55
MEKNT A GQLM+SSA P+SPKRPAGRTKFQETRH VFRGVR RG AGRWVC+
Sbjct: 1 MEKNTTAMGQLMSSSATTAATATGPASPKRPAGRTKFQETRHPVFRGVRRRGRAGRWVCE 60
Query: 56 VRVPGSRGDRFWIGTSDTAEETARTHDAAMLALCGASASLNFADSAWLLHVPRAPVVSGL 115
VRVPGSRGDR W+GT DTAEE AR HDAAMLALCGASASLNFADSAWLLHVPRAPV SG
Sbjct: 61 VRVPGSRGDRLWVGTFDTAEEAARAHDAAMLALCGASASLNFADSAWLLHVPRAPVASGH 120
Query: 116 R--PPAARCATRCLQGHRR 132
P R A+ + +R
Sbjct: 121 DQLPDVQRAASEAVAEFQR 139
>Os09g0522200 DRE-binding protein 1A
Length = 238
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 70/93 (75%), Gaps = 6/93 (6%)
Query: 23 PKRPAGRTKFQETRHLVFRGVRWRGCAGRWVCKVRVPGSRGDRFWIGTSDTAEETARTHD 82
PKRPAGRTKF+ETRH VFRGVR RG AGRWVC+VRVPG RG R W+GT DTAE AR HD
Sbjct: 34 PKRPAGRTKFRETRHPVFRGVRRRGNAGRWVCEVRVPGRRGCRLWLGTFDTAEGAARAHD 93
Query: 83 AAMLALCGASAS------LNFADSAWLLHVPRA 109
AAMLA+ LNFADSAWLL VPR+
Sbjct: 94 AAMLAINAGGGGGGGACCLNFADSAWLLAVPRS 126
>Os04g0572400 Similar to CRT/DRE binding factor 1
Length = 219
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/87 (58%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
Query: 21 SSPKRPAGRTKFQETRHLVFRGVRWRGCAGRWVCKVRVPGSRGDRFWIGTSDTAEETART 80
+ PKR AGRTKF+ETRH V++GVR R GRWVC+VR P + R W+GT +TAE AR
Sbjct: 34 APPKRRAGRTKFKETRHPVYKGVRSRN-PGRWVCEVREPHGK-QRIWLGTFETAEMAARA 91
Query: 81 HDAAMLALCGASASLNFADSAWLLHVP 107
HD A +AL G +A LNFADS L VP
Sbjct: 92 HDVAAMALRGRAACLNFADSPRRLRVP 118
>Os06g0127100 Similar to CBF-like protein
Length = 214
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
Query: 16 AEATPSSPKRPAGRTKFQETRHLVFRGVRWRGCAGRWVCKVRVPGSRGDRFWIGTSDTAE 75
A T + PKRPAGRTKF+ETRH V+RGVR RG AGRWVC+VR P + R W+GT TAE
Sbjct: 10 ATVTSAPPKRPAGRTKFRETRHPVYRGVRRRGPAGRWVCEVREPNKKS-RIWLGTFATAE 68
Query: 76 ETARTHDAAMLALCGASASLNFADSAWLLHV 106
AR HD A LAL G A LNFADSA LL V
Sbjct: 69 AAARAHDVAALALRGRGACLNFADSARLLRV 99
>Os08g0545500 Similar to DRE-binding protein 1A
Length = 251
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/117 (65%), Positives = 83/117 (70%), Gaps = 15/117 (12%)
Query: 13 TSSAEA----TPSSPKRPAGRTKFQETRHLVFRGVRWRGCAGRWVCKVRVPGSRGDRFWI 68
TSS+E +P S KRPAGRTKF ETRH VFRGVR RG AGRWVC+VRVPG RG R W+
Sbjct: 24 TSSSEPCRRLSPPSSKRPAGRTKFHETRHPVFRGVRRRGRAGRWVCEVRVPGRRGCRLWL 83
Query: 69 GTSDTAEETARTHDAAMLALCG-ASASLNFADSAWLLHVPRAPVVSGLRPPAA-RCA 123
GT D A+ AR HDAAMLAL G A+A LNFADSAWLL VP PPA RCA
Sbjct: 84 GTFDAADAAARAHDAAMLALRGRAAACLNFADSAWLLAVP---------PPATLRCA 131
>Os02g0677300 Similar to CRT/DRE binding factor 1
Length = 224
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 68/106 (64%), Gaps = 7/106 (6%)
Query: 2 EKNTAASGQLMTSSAEATPSSPKRPAGRTKFQETRHLVFRGVRWRGCAGRWVCKVRVPGS 61
+ + +S + SSA PKR AGRTKF+ETRH VF+GVR R GRWVC+VR P
Sbjct: 22 DADDGSSAYMTVSSA-----PPKRRAGRTKFKETRHPVFKGVRRRN-PGRWVCEVREPHG 75
Query: 62 RGDRFWIGTSDTAEETARTHDAAMLALCGASASLNFADSAWLLHVP 107
+ R W+GT +TAE AR HD A LAL G +A LNFADS L VP
Sbjct: 76 K-QRIWLGTFETAEMAARAHDVAALALRGRAACLNFADSPRRLRVP 120
>Os01g0968800 Similar to Dehydration responsive element binding protein 1F
(DREB1F protein)
Length = 219
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 57/92 (61%), Gaps = 4/92 (4%)
Query: 23 PKRPAGRTKFQETRHLVFRGVRWRGCAGRWVCKVRVPGSRGDRFWIGTSDTAEETARTHD 82
PKR AGR KF+ETRH V+RGVR R RWVC+VR P ++ R W+GT T E AR HD
Sbjct: 30 PKRRAGRKKFRETRHPVYRGVRARAGGSRWVCEVREPQAQA-RIWLGTYPTPEMAARAHD 88
Query: 83 AAMLALCGA-SASLNFADSAWLLHVPRAPVVS 113
A +AL G A LNF DS L PRA S
Sbjct: 89 VAAIALRGERGAELNFPDSPSTL--PRARTAS 118
>Os09g0522100 Similar to C-repeat binding factor 3-like protein
Length = 246
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/113 (61%), Positives = 79/113 (69%), Gaps = 11/113 (9%)
Query: 24 KRPAGRTKFQETRHLVFRGVRWRGCAGRWVCKVRVPGSRGDRFWIGTSDTAEETARTHDA 83
KRPAGRTKF+ETRH V+RGVR RG AGRWVC+VRVPG RG R W+GT TAE AR HDA
Sbjct: 31 KRPAGRTKFRETRHPVYRGVRRRGGAGRWVCEVRVPGKRGARLWLGTYVTAEAAARAHDA 90
Query: 84 AMLAL-----CGASASLNFADSAWLLHVPRAPV--VSGLRPPAARCATRCLQG 129
AM+AL G +A LNF DSAWLL VP A ++G+R R AT + G
Sbjct: 91 AMIALRGGAGGGGAACLNFQDSAWLLAVPPAAPSDLAGVR----RAATEAVAG 139
>Os09g0522000 Similar to CBF-like protein
Length = 218
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 71/99 (71%), Gaps = 5/99 (5%)
Query: 23 PKRPAGRTKFQETRHLVFRGVRWRGCAGR----WVCKVRVPGSRGDRFWIGTSDTAEETA 78
PKRPAGRTKF+ETRH V+RGVR RG WVC+VRVPG+RG R W+GT TAE A
Sbjct: 16 PKRPAGRTKFRETRHPVYRGVRRRGGRPGAAGRWVCEVRVPGARGSRLWLGTFATAEAAA 75
Query: 79 RTHDAAMLALCGASASLNFADSAW-LLHVPRAPVVSGLR 116
R HDAA LAL G +A LNFADSAW + VP + ++G R
Sbjct: 76 RAHDAAALALRGRAACLNFADSAWRMPPVPASAALAGAR 114
>Os10g0560700 Similar to Transcriptional factor TINY
Length = 289
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 29 RTKFQETRHLVFRGVRWRGCAGRWVCKVRVPGSRGDRFWIGTSDTAEETARTHDAAMLAL 88
R + + +H V+RGVR R G+WV ++R P + R W+GT TA+ AR HD A LA+
Sbjct: 85 RKRSSDGKHPVYRGVRMRAW-GKWVSEIREPRKKS-RIWLGTFPTADMAARAHDVAALAI 142
Query: 89 CGASASLNFADSAWLLHVPRA 109
G +A LNF D A +L PRA
Sbjct: 143 KGRAAHLNFPDLAGVL--PRA 161
>Os04g0550200 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 217
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 33 QETRHLVFRGVRWRGCAGRWVCKVRVPGSRGDRFWIGTSDTAEETARTHDAAMLALCGAS 92
+ RH +RGVR R G+WV ++R P + R W+GT TAE AR HD A LA+ G +
Sbjct: 40 NDGRHPTYRGVRMRSW-GKWVSEIREPRKKS-RIWLGTFATAEMAARAHDVAALAIKGRT 97
Query: 93 ASLNFADSAWLLHVP 107
A LNF D A LL P
Sbjct: 98 AHLNFPDLAHLLPRP 112
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.133 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,614,178
Number of extensions: 265664
Number of successful extensions: 1183
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 1227
Number of HSP's successfully gapped: 17
Length of query: 253
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 154
Effective length of database: 11,866,615
Effective search space: 1827458710
Effective search space used: 1827458710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)