Os09g0522200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DRE-binding protein 1A.
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Os09g0522200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DRE-binding protein 1A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1450.89 | 1.79 | 8.98 | -2.58 | 2.81 | 5.34 | 4.62 | 5.38 | -0.609 | 13.6 | 29.6 | 703 | 17 | 2 |
| 1469.82 | 1.79 | 8.89 | -2.02 | 3.86 | 6.37 | -0.44 | -- | -0.654 | 12.8 | 29.41 | 679 | 17.2 | 2.1 |
| 1467.54 | 1.78 | 9.02 | -2.02 | 3.26 | 5.73 | -- | 2.81 | -0.547 | 13.1 | 29.51 | 692 | 17.1 | 1.98 |
| 1464.75 | 1.78 | 8.88 | -2.05 | 3.83 | 6.17 | -- | -- | -0.501 | 13.1 | 29.5 | 683 | 17.3 | 2.05 |
| 1703.18 | 1.92 | 9.06 | -1.97 | -- | 5.9 | -- | 2.9 | -0.597 | -- | 29.66 | 2075 | 17.1 | 1.88 |
| 2451.79 | 2.32 | 8.9 | -2.74 | 2.97 | -- | 2.12 | -- | -0.0571 | 21.9 | -- | -- | -- | -- |
| 2468.4 | 2.33 | 8.9 | -2.83 | 2.96 | -- | -- | -- | -0.0645 | 22 | -- | -- | -- | -- |
| 1707.24 | 1.92 | 8.97 | -1.92 | -- | 6.08 | -- | -- | -0.69 | -- | 29.67 | 2075 | 17.1 | 1.94 |
| 1565.41 | 1.84 | 8.84 | -- | 3.8 | 6.19 | -- | -- | -0.369 | 13.1 | 29.5 | 687 | 17.3 | 1.92 |
| 2994.8 | 2.56 | 8.83 | -2.79 | -- | -- | -- | -- | -0.062 | -- | -- | -- | -- | -- |
| 2679.5 | 2.42 | 8.83 | -- | 2.95 | -- | -- | -- | 0.251 | 22 | -- | -- | -- | -- |
| 1801.59 | 1.98 | 8.9 | -- | -- | 6.55 | -- | -- | -0.498 | -- | 29.53 | 2095 | 17.3 | 1.8 |
| 3200.6 | 2.64 | 8.76 | -- | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1475.03 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 2 | 1530.62 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 5 | 1611.62 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 11 | 1632.92 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 12 | 1634.50 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 10 |
| 13 | 1635.16 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 13 |
| 62 | 1780.66 | radiation | 1.0 | 30 | > th | dose independent | sin | 14 | NA |
| 69 | 1789.44 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 72 | 1793.82 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 17 |
| 85 | 1807.95 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 86 | 1809.76 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 91 | 1811.02 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 97 | 1815.75 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 100 | 1818.27 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 103 | 1821.86 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 15 |
| 108 | 1823.80 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 110 | 1825.88 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 112 | 1826.98 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 113 | 1827.26 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 127 | 1829.36 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 129 | 1829.61 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 133 | 1830.87 | radiation | 1.0 | 30 | < th | dose independent | sin | 14 | NA |
| 134 | 1831.41 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 146 | 1832.86 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 150 | 1834.71 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 155 | 1835.78 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 156 | 1835.94 | radiation | 1.0 | 10 | < th | dose dependent | sin | 14 | NA |
| 170 | 1838.57 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 171 | 1838.65 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 189 | 1838.94 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 203 | 1840.35 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 17 | 15 |
| 204 | 1840.44 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 205 | 1840.51 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 206 | 1840.65 | humidity | 70.0 | 720 | > th | dose independent | sin | 13 | NA |
| 263 | 1843.13 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 288 | 1844.77 | humidity | 60.0 | 720 | > th | dose independent | rect. | 16 | 18 |
| 369 | 1854.49 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 374 | 1854.89 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 3 |
| 375 | 1855.02 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 381 | 1855.43 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 400 | 1855.73 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 22 |
| 418 | 1855.88 | temperature | 30.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 518 | 1857.57 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 629 | 1859.07 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 697 | 1862.48 | humidity | 70.0 | 720 | < th | dose independent | sin | 13 | NA |
| 705 | 1863.58 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 737 | 1865.30 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 754 | 1866.32 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 755 | 1866.45 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 2 |
| 761 | 1867.05 | humidity | 80.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 765 | 1867.36 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 17 | 9 |
| 784 | 1867.53 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 786 | 1867.90 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 805 | 1869.25 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 818 | 1870.40 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 842 | 1871.16 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 15 |
| 843 | 1871.16 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 846 | 1871.26 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 10 | 17 |
| 850 | 1871.44 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 894 | 1872.89 | humidity | 70.0 | 720 | < th | dose independent | rect. | 16 | 4 |
| 917 | 1873.55 | radiation | 10.0 | 1440 | > th | dose independent | sin | 13 | NA |
| 938 | 1874.06 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 13 | 14 |
| 943 | 1874.39 | radiation | 30.0 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 944 | 1874.41 | temperature | 30.0 | 720 | < th | dose independent | sin | 13 | NA |
| 974 | 1876.15 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 22 |