Os08g0545400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CRT/DRE binding factor (Transcription factor RCBF4).
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Os08g0545400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CRT/DRE binding factor (Transcription factor RCBF4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 311.26 | 0.829 | 3.57 | 0.511 | 0.894 | 3.13 | 1.66 | 5.9 | -0.0361 | 11.5 | 0.5786 | 1444 | -- | -- |
| 318.54 | 0.831 | 3.46 | 0.977 | 1.65 | 2.31 | 1.75 | -- | 0.0833 | 12.3 | 2.644 | 1620 | -- | -- |
| 319.92 | 0.833 | 3.58 | 0.563 | 0.645 | 3.18 | -- | 6.03 | -0.0364 | 11.2 | 0.5765 | 1413 | -- | -- |
| 327.84 | 0.843 | 3.46 | 1.09 | 0.882 | 1.87 | -- | -- | 0.111 | 11.3 | 2.906 | 1439 | -- | -- |
| 328.72 | 0.844 | 3.59 | 0.615 | -- | 3.42 | -- | 6.17 | -0.0418 | -- | 0.6037 | 1354 | -- | -- |
| 359.19 | 0.888 | 3.53 | 0.629 | 0.88 | -- | 1.83 | -- | -0.183 | 11.7 | -- | -- | -- | -- |
| 373.41 | 0.905 | 3.53 | 0.701 | 0.876 | -- | -- | -- | -0.177 | 11.4 | -- | -- | -- | -- |
| 336.27 | 0.854 | 3.48 | 1.02 | -- | 2.28 | -- | -- | 0.11 | -- | 3.424 | 1305 | -- | -- |
| 352.66 | 0.875 | 3.51 | -- | 0.825 | 1.32 | -- | -- | -0.0392 | 11.1 | 4.787 | 1431 | -- | -- |
| 421.44 | 0.959 | 3.55 | 0.678 | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
| 386.35 | 0.919 | 3.55 | -- | 0.868 | -- | -- | -- | -0.255 | 11.3 | -- | -- | -- | -- |
| 359.4 | 0.883 | 3.51 | -- | -- | 1.92 | -- | -- | -0.0291 | -- | 5.282 | 1281 | -- | -- |
| 433.57 | 0.972 | 3.57 | -- | -- | -- | -- | -- | -0.261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 310.37 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 2 | 310.48 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 4 | 310.60 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 5 | 310.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 7 | 310.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 24 | 311.04 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 35 | 311.30 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 40 | 311.43 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 41 | 311.54 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 43 | 311.55 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 52 | 311.78 | temperature | 25 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 58 | 311.88 | temperature | 25 | 14400 | > th | dose independent | rect. | 16 | 9 |
| 132 | 312.46 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 140 | 312.55 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 146 | 312.60 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 155 | 312.66 | temperature | 25 | 14400 | < th | dose independent | sin | 14 | NA |
| 175 | 312.75 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 4 |
| 178 | 312.76 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 184 | 312.78 | temperature | 25 | 14400 | > th | dose independent | sin | 14 | NA |
| 195 | 312.83 | temperature | 20 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 222 | 312.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 247 | 312.98 | radiation | 1 | 1440 | < th | dose dependent | sin | 13 | NA |
| 257 | 312.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 267 | 313.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 268 | 313.03 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 271 | 313.03 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 14 |
| 276 | 313.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 332 | 313.13 | temperature | 25 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 349 | 313.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 357 | 313.16 | temperature | 25 | 14400 | > th | dose dependent | sin | 15 | NA |
| 460 | 313.35 | temperature | 20 | 14400 | > th | dose dependent | sin | 12 | NA |
| 464 | 313.36 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 521 | 313.45 | temperature | 20 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 619 | 313.61 | humidity | 90 | 43200 | > th | dose dependent | sin | 17 | NA |
| 734 | 313.81 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 22 |
| 746 | 313.83 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 758 | 313.84 | temperature | 25 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 768 | 313.85 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 817 | 313.91 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 879 | 313.97 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 881 | 313.97 | temperature | 10 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 883 | 313.97 | temperature | 30 | 14400 | < th | dose dependent | rect. | 18 | 12 |